Wall clock time and date at job start Tue Mar 31 2020 15:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47071 * 2 1 4 4 H 1.09004 * 110.72372 * 301.90092 * 3 2 1 5 5 C 1.54936 * 110.66849 * 178.80677 * 3 2 1 6 6 C 1.54606 * 102.92056 * 204.14695 * 5 3 2 7 7 C 1.53992 * 105.13732 * 21.95807 * 6 5 3 8 8 N 1.47900 * 107.05953 * 1.22271 * 7 6 5 9 9 C 1.38405 * 110.99787 * 214.15489 * 8 7 6 10 10 N 1.31379 * 126.37056 * 232.54897 * 9 8 7 11 11 N 1.28510 * 110.07847 * 179.97438 * 10 9 8 12 12 C 1.31258 * 109.93261 * 359.97438 * 11 10 9 13 13 C 1.47877 * 126.46977 * 180.02562 * 12 11 10 14 14 C 1.39952 * 120.02331 * 162.60948 * 13 12 11 15 15 C 1.38332 * 120.35730 * 179.97438 * 14 13 12 16 16 C 1.37755 * 120.39894 * 0.02562 * 15 14 13 17 17 C 1.40786 * 120.04105 * 359.97438 * 16 15 14 18 18 C 1.41429 * 120.17819 * 180.02562 * 17 16 15 19 19 H 1.07992 * 120.00193 * 147.98747 * 18 17 16 20 20 C 1.39925 * 119.99926 * 327.98790 * 18 17 16 21 21 N 1.30831 * 120.00034 * 162.19609 * 20 18 17 22 22 Si 1.86804 * 119.99926 * 342.19891 * 20 18 17 23 23 H 1.48501 * 109.47213 * 95.28778 * 22 20 18 24 24 H 1.48493 * 109.47010 * 215.29011 * 22 20 18 25 25 H 1.48503 * 109.46997 * 335.28821 * 22 20 18 26 26 C 1.38964 * 120.02034 * 342.33076 * 13 12 11 27 27 N 1.36468 * 126.37210 * 52.53107 * 9 8 7 28 28 C 1.46500 * 127.16152 * 359.97438 * 27 9 8 29 29 H 1.08997 * 109.47079 * 300.00162 * 1 2 3 30 30 H 1.09001 * 109.46741 * 60.00701 * 1 2 3 31 31 H 1.08995 * 109.46558 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47717 * 240.00080 * 2 1 3 33 33 H 1.09001 * 109.47483 * 119.99245 * 2 1 3 34 34 H 1.09001 * 110.72503 * 85.79504 * 5 3 2 35 35 H 1.08995 * 110.88032 * 322.57755 * 5 3 2 36 36 H 1.08993 * 110.30951 * 263.04302 * 6 5 3 37 37 H 1.08995 * 110.38741 * 140.91621 * 6 5 3 38 38 H 1.08997 * 109.91786 * 241.86946 * 7 6 5 39 39 H 1.08998 * 109.91610 * 120.57567 * 7 6 5 40 40 H 1.07997 * 119.82223 * 359.97438 * 14 13 12 41 41 H 1.07999 * 119.79883 * 180.02562 * 15 14 13 42 42 H 1.08002 * 119.98041 * 180.02562 * 16 15 14 43 43 H 0.97001 * 119.99742 * 179.97438 * 21 20 18 44 44 H 1.07993 * 120.20131 * 0.02562 * 26 13 12 45 45 H 1.09004 * 109.46425 * 264.35992 * 28 27 9 46 46 H 1.08995 * 109.47315 * 24.36057 * 28 27 9 47 47 H 1.09001 * 109.47136 * 144.36557 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6606 1.9858 -0.8655 5 6 3.5887 1.4750 0.0302 6 6 3.8935 2.8613 0.6431 7 6 2.6161 3.2519 1.4091 8 7 1.6610 2.1326 1.2594 9 6 0.3585 2.5969 1.1981 10 7 -0.6479 2.1940 1.9402 11 7 -1.7154 2.8344 1.6213 12 6 -1.4552 3.6855 0.6565 13 6 -2.4171 4.6066 0.0138 14 6 -1.9523 5.6969 -0.7305 15 6 -2.8459 6.5626 -1.3351 16 6 -4.2031 6.3619 -1.2112 17 6 -4.6891 5.2705 -0.4664 18 6 -6.0820 5.0615 -0.3378 19 1 -6.4719 4.0579 -0.2539 20 6 -6.9548 6.1550 -0.3193 21 7 -8.2303 5.9778 -0.5503 22 14 -6.2988 7.8677 0.0353 23 1 -6.0248 8.5678 -1.2453 24 1 -7.3070 8.6329 0.8120 25 1 -5.0431 7.7639 0.8212 26 6 -3.7831 4.3869 0.1435 27 7 -0.1191 3.5585 0.3557 28 6 0.6349 4.3020 -0.6567 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0276 0.0005 32 1 1.8935 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.9958 1.4013 -0.9783 35 1 3.9817 0.6789 0.6624 36 1 4.0990 3.5862 -0.1444 37 1 4.7398 2.7963 1.3270 38 1 2.1917 4.1615 0.9841 39 1 2.8472 3.4043 2.4634 40 1 -0.8902 5.8633 -0.8334 41 1 -2.4773 7.4008 -1.9077 42 1 -4.8948 7.0418 -1.6864 43 1 -8.8354 6.7359 -0.5371 44 1 -4.1461 3.5445 0.7135 45 1 0.9610 5.2548 -0.2396 46 1 1.5058 3.7212 -0.9604 47 1 -0.0012 4.4832 -1.5231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646675215.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:38 Heat of formation + Delta-G solvation = 100.896356 kcal Electronic energy + Delta-G solvation = -28165.063463 eV Core-core repulsion = 24541.615689 eV Total energy + Delta-G solvation = -3623.447775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.13868 -40.50031 -39.60570 -36.27055 -35.52356 -34.34200 -33.92618 -32.33442 -32.08540 -29.32980 -29.10332 -28.66795 -27.19128 -24.71520 -24.26141 -23.02846 -22.26470 -21.94080 -21.88658 -21.30980 -19.46444 -18.22780 -17.72172 -17.60989 -17.21520 -16.76291 -16.38154 -16.17458 -15.85524 -15.54286 -14.68515 -14.55355 -14.47310 -14.42665 -14.34428 -14.13700 -14.01586 -13.87474 -13.75424 -13.38887 -13.00131 -12.85291 -12.79266 -12.59990 -12.46461 -12.36313 -12.24109 -11.88428 -11.73887 -11.70255 -11.62382 -11.48440 -11.36516 -11.16310 -11.10575 -10.47499 -10.01078 -9.61469 -9.11581 -8.90752 -6.56034 -0.01052 0.72235 1.01481 1.25047 1.27366 1.41347 1.48921 1.82780 2.12006 2.34630 2.59331 3.28820 3.39932 3.44015 3.50468 3.65765 3.86474 3.94981 3.99670 4.09664 4.11309 4.24520 4.31333 4.32470 4.35540 4.46158 4.54483 4.58037 4.60346 4.66267 4.79023 4.87394 4.88549 4.91052 4.95252 4.98625 4.99510 5.13320 5.15166 5.17762 5.22682 5.34075 5.39765 5.47028 5.62184 5.64799 5.77098 5.85178 6.08525 6.20836 6.31725 6.65375 6.74929 7.68495 8.18518 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.024116 B = 0.003133 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.778374 B = 8935.052630 C = 9476.127249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.099 4.099 3 C 0.057 3.943 4 H 0.062 0.938 5 C -0.109 4.109 6 C -0.120 4.120 7 C 0.021 3.979 8 N -0.429 5.429 9 C 0.353 3.647 10 N -0.308 5.308 11 N -0.322 5.322 12 C 0.234 3.766 13 C -0.001 4.001 14 C -0.208 4.208 15 C -0.072 4.072 16 C -0.230 4.230 17 C 0.076 3.924 18 C -0.489 4.489 19 H 0.050 0.950 20 C 0.047 3.953 21 N -0.851 5.851 22 Si 0.965 3.035 23 H -0.244 1.244 24 H -0.278 1.278 25 H -0.254 1.254 26 C -0.176 4.176 27 N -0.490 5.490 28 C 0.048 3.952 29 H 0.058 0.942 30 H 0.027 0.973 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.107 0.893 43 H 0.295 0.705 44 H 0.090 0.910 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.325 -0.939 -4.281 28.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.137 4.137 3 C -0.050 4.050 4 H 0.080 0.920 5 C -0.147 4.147 6 C -0.158 4.158 7 C -0.105 4.105 8 N -0.155 5.155 9 C -0.002 4.002 10 N -0.150 5.150 11 N -0.163 5.163 12 C -0.031 4.031 13 C -0.004 4.004 14 C -0.228 4.228 15 C -0.090 4.090 16 C -0.250 4.250 17 C 0.073 3.927 18 C -0.518 4.518 19 H 0.068 0.932 20 C -0.167 4.167 21 N -0.477 5.477 22 Si 0.787 3.213 23 H -0.168 1.168 24 H -0.205 1.205 25 H -0.178 1.178 26 C -0.198 4.198 27 N -0.186 5.186 28 C -0.092 4.092 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.164 0.836 41 H 0.167 0.833 42 H 0.125 0.875 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.126 0.874 46 H 0.130 0.870 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 27.355 -2.058 -2.796 27.575 hybrid contribution -0.699 1.268 -0.968 1.742 sum 26.656 -0.790 -3.765 26.932 Atomic orbital electron populations 1.22108 0.98119 1.01744 1.01363 1.21425 0.93924 0.94850 1.03497 1.23288 0.97998 0.95392 0.88317 0.91989 1.22575 0.90536 0.98159 1.03412 1.22438 0.95804 0.97291 1.00248 1.23305 0.92607 0.91355 1.03263 1.62046 0.94359 1.23051 1.36025 1.23259 0.94224 0.90953 0.91812 1.74299 0.95382 1.22270 1.23046 1.74482 1.19923 1.08247 1.13624 1.22958 0.83331 0.99482 0.97372 1.17432 0.89786 0.94275 0.98870 1.21097 1.00141 0.96812 1.04736 1.20976 0.91886 0.98478 0.97681 1.21382 0.96429 1.01918 1.05272 1.17715 0.92777 0.92130 0.90061 1.19442 0.90902 0.94838 1.46640 0.93192 1.26856 0.94458 1.04885 0.90514 1.69726 1.05790 1.36129 1.36081 0.85495 0.79045 0.76416 0.80369 1.16840 1.20466 1.17768 1.21092 0.91790 1.02787 1.04091 1.47315 1.08712 1.32056 1.30511 1.22899 0.97503 0.97871 0.90952 0.92293 0.95378 0.92556 0.88980 0.90694 0.87696 0.89572 0.88721 0.88682 0.92434 0.89509 0.83581 0.83344 0.87532 0.89487 0.89182 0.87426 0.86978 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.85 9.18 71.98 0.66 -4.19 16 2 C -0.10 -1.87 5.69 30.60 0.17 -1.70 16 3 C 0.06 0.94 2.19 45.26 0.10 1.04 16 4 H 0.06 1.02 5.66 -2.38 -0.01 1.01 16 5 C -0.11 -0.92 6.50 31.80 0.21 -0.71 16 6 C -0.12 -0.88 6.93 31.48 0.22 -0.66 16 7 C 0.02 0.33 6.02 86.45 0.52 0.85 16 8 N -0.43 -9.66 5.05 -670.08 -3.38 -13.04 16 9 C 0.35 10.88 4.83 260.12 1.26 12.13 16 10 N -0.31 -12.46 10.20 -58.02 -0.59 -13.05 16 11 N -0.32 -14.50 11.98 -50.79 -0.61 -15.11 16 12 C 0.23 9.25 7.71 136.23 1.05 10.30 16 13 C 0.00 -0.03 5.86 -20.14 -0.12 -0.15 16 14 C -0.21 -7.03 8.77 22.71 0.20 -6.84 16 15 C -0.07 -2.55 10.01 22.18 0.22 -2.33 16 16 C -0.23 -10.19 7.19 22.78 0.16 -10.03 16 17 C 0.08 3.90 5.04 -21.32 -0.11 3.79 16 18 C -0.49 -28.22 9.56 23.46 0.22 -27.99 16 19 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 20 C 0.05 2.55 5.40 85.25 0.46 3.01 16 21 N -0.85 -47.39 13.93 21.82 0.30 -47.09 16 22 Si 0.96 42.00 24.57 68.60 1.69 43.69 16 23 H -0.24 -9.54 6.74 99.48 0.67 -8.87 16 24 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 25 H -0.25 -11.34 6.91 99.48 0.69 -10.65 16 26 C -0.18 -8.77 9.44 22.99 0.22 -8.55 16 27 N -0.49 -14.29 3.14 -540.09 -1.70 -15.98 16 28 C 0.05 0.83 7.27 127.77 0.93 1.76 16 29 H 0.06 2.04 4.38 -2.39 -0.01 2.03 16 30 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.09 0.74 8.06 -2.39 -0.02 0.72 16 36 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.06 0.85 5.13 -2.39 -0.01 0.83 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.15 3.56 4.84 -2.91 -0.01 3.55 16 41 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 42 H 0.11 4.64 4.99 -2.91 -0.01 4.62 16 43 H 0.29 14.63 8.30 -92.71 -0.77 13.87 16 44 H 0.09 4.83 7.95 -2.91 -0.02 4.81 16 45 H 0.11 1.37 7.38 -2.38 -0.02 1.35 16 46 H 0.11 1.28 5.09 -2.39 -0.01 1.27 16 47 H 0.11 1.82 6.44 -2.39 -0.02 1.81 16 Total: -1.00 -73.85 356.64 3.02 -70.83 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.94 Total: 20.03 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 6.37 Total: -30.28 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -5.98 Total: -104.27 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.69 Total: 43.69 kcal Total: -73.85 3.02 -70.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646675215.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.722 kcal (2) G-P(sol) polarization free energy of solvation -73.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds