Wall clock time and date at job start Tue Mar 31 2020 15:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36453 * 127.13805 * 2 1 4 4 N 1.38579 * 126.47223 * 0.02562 * 3 2 1 5 5 C 1.47165 * 110.99993 * 69.74893 * 4 3 2 6 6 C 1.52897 * 108.50643 * 52.15488 * 5 4 3 7 7 C 1.50711 * 109.96192 * 50.38179 * 6 5 4 8 8 C 1.38679 * 118.48975 * 163.12854 * 7 6 5 9 9 C 1.38031 * 120.34917 * 179.83832 * 8 7 6 10 10 C 1.38265 * 119.82844 * 359.97438 * 9 8 7 11 11 C 1.38008 * 119.86861 * 0.07010 * 10 9 8 12 12 C 1.37830 * 121.66359 * 343.10739 * 7 6 5 13 13 C 1.46637 * 111.00026 * 192.73193 * 4 3 2 14 14 N 1.31218 * 107.05684 * 179.97438 * 3 2 1 15 15 N 1.28529 * 109.85868 * 359.73253 * 14 3 2 16 16 C 1.30297 * 110.05469 * 0.44653 * 15 14 3 17 17 C 1.50693 * 126.34966 * 179.82217 * 16 15 14 18 18 C 1.52999 * 109.47065 * 2.56395 * 17 16 15 19 19 C 1.53005 * 109.47016 * 122.56401 * 17 16 15 20 20 C 1.50703 * 109.47243 * 242.56152 * 17 16 15 21 21 H 1.07998 * 119.99757 * 358.86836 * 20 17 16 22 22 C 1.37884 * 120.00024 * 178.87069 * 20 17 16 23 23 N 1.31513 * 119.99729 * 5.55970 * 22 20 17 24 24 Si 1.86794 * 119.99863 * 185.56088 * 22 20 17 25 25 H 1.48506 * 109.47078 * 94.91236 * 24 22 20 26 26 H 1.48496 * 109.47193 * 214.90853 * 24 22 20 27 27 H 1.48493 * 109.47200 * 334.91487 * 24 22 20 28 28 H 1.08996 * 109.47113 * 271.20292 * 1 2 3 29 29 H 1.09003 * 109.47265 * 31.20484 * 1 2 3 30 30 H 1.09000 * 109.47180 * 151.20350 * 1 2 3 31 31 H 1.09002 * 109.63124 * 171.85781 * 5 4 3 32 32 H 1.09000 * 109.63125 * 292.24880 * 5 4 3 33 33 H 1.08997 * 109.38830 * 170.54002 * 6 5 4 34 34 H 1.09008 * 109.38644 * 290.33503 * 6 5 4 35 35 H 1.08002 * 119.82443 * 359.86308 * 8 7 6 36 36 H 1.08003 * 120.08222 * 179.97438 * 9 8 7 37 37 H 1.08006 * 120.06442 * 180.09496 * 10 9 8 38 38 H 1.07999 * 119.81335 * 180.02562 * 11 10 9 39 39 H 1.08994 * 109.29784 * 49.45442 * 13 4 3 40 40 H 1.09005 * 109.29652 * 168.82772 * 13 4 3 41 41 H 1.08999 * 109.47511 * 54.19718 * 18 17 16 42 42 H 1.09001 * 109.46706 * 174.19502 * 18 17 16 43 43 H 1.09000 * 109.46998 * 294.18752 * 18 17 16 44 44 H 1.08998 * 109.47297 * 67.09551 * 19 17 16 45 45 H 1.09000 * 109.47011 * 187.09386 * 19 17 16 46 46 H 1.08996 * 109.46958 * 307.08948 * 19 17 16 47 47 H 0.96997 * 119.99800 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2888 1.0878 0.0000 4 7 1.8977 2.4173 0.0005 5 6 1.2932 2.7887 1.2898 6 6 2.2530 2.3862 2.4098 7 6 3.6353 2.9100 2.1158 8 6 4.5560 2.9649 3.1514 9 6 5.8339 3.4348 2.9243 10 6 6.1981 3.8524 1.6575 11 6 5.2823 3.7990 0.6264 12 6 3.9968 3.3293 0.8536 13 6 3.0304 3.2983 -0.3014 14 7 3.5212 0.6372 0.0006 15 7 3.5162 -0.6480 0.0065 16 6 2.2905 -1.0901 0.0006 17 6 1.8621 -2.5349 0.0008 18 6 3.0984 -3.4334 0.0737 19 6 0.9661 -2.8009 1.2121 20 6 1.0985 -2.8326 -1.2639 21 1 0.9236 -2.0490 -1.9862 22 6 0.6232 -4.1054 -1.4988 23 7 0.7397 -5.0321 -0.5729 24 14 -0.1862 -4.5135 -3.1320 25 1 0.8218 -5.1010 -4.0509 26 1 -1.2827 -5.4900 -2.9108 27 1 -0.7408 -3.2740 -3.7330 28 1 -0.3633 0.0216 1.0274 29 1 -0.3634 0.8790 -0.5324 30 1 -0.3633 -0.9006 -0.4950 31 1 1.1267 3.8655 1.3195 32 1 0.3435 2.2679 1.4125 33 1 1.9018 2.8019 3.3542 34 1 2.2876 1.2992 2.4835 35 1 4.2718 2.6379 4.1407 36 1 6.5474 3.4761 3.7340 37 1 7.1974 4.2193 1.4752 38 1 5.5678 4.1250 -0.3628 39 1 3.5435 2.9333 -1.1911 40 1 2.6621 4.3068 -0.4898 41 1 3.7047 -3.1482 0.9334 42 1 2.7865 -4.4726 0.1777 43 1 3.6845 -3.3195 -0.8382 44 1 0.0290 -2.2561 1.0976 45 1 0.7591 -3.8687 1.2834 46 1 1.4718 -2.4676 2.1183 47 1 0.4050 -5.9274 -0.7379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646676565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:00 Heat of formation + Delta-G solvation = 115.551745 kcal Electronic energy + Delta-G solvation = -29037.247141 eV Core-core repulsion = 25414.434872 eV Total energy + Delta-G solvation = -3622.812269 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.33289 -40.11707 -37.26775 -35.65373 -34.00469 -32.83272 -31.58987 -30.96715 -29.35961 -28.05401 -26.99342 -25.73976 -25.31551 -24.81510 -23.60645 -22.12015 -21.82020 -21.22136 -19.28486 -18.85715 -16.76729 -16.72946 -16.13982 -15.93960 -15.58725 -15.08085 -14.85038 -14.62687 -14.41314 -13.99575 -13.68500 -13.33146 -13.07859 -13.00205 -12.71571 -12.53163 -12.33027 -12.11024 -11.87861 -11.64156 -11.56054 -11.42422 -11.30276 -11.06680 -10.92940 -10.77278 -10.69689 -10.51527 -10.36654 -10.09613 -9.80361 -9.68685 -9.39444 -9.08679 -8.89883 -8.65892 -8.49971 -8.42208 -7.64797 -6.14577 -4.24760 1.46551 1.48873 2.55323 2.93306 3.21724 3.29847 3.32066 3.72576 3.83443 4.06546 4.31077 4.60813 4.75646 4.84998 4.93305 5.06805 5.11466 5.12200 5.28095 5.38784 5.39725 5.45099 5.54432 5.59305 5.62149 5.69993 5.72214 5.84451 5.98414 6.06790 6.08360 6.13258 6.18682 6.53995 6.55166 6.58877 6.64586 6.67746 6.76730 6.85584 6.92955 7.04019 7.10152 7.25719 7.31129 7.51405 7.58850 7.82579 7.91435 8.01841 8.20283 8.72345 9.40755 9.66124 10.87511 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021348 B = 0.003702 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.289755 B = 7561.874282 C = 7823.578973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.470 5.470 3 C 0.309 3.691 4 N -0.444 5.444 5 C 0.054 3.946 6 C -0.113 4.113 7 C -0.066 4.066 8 C -0.117 4.117 9 C -0.123 4.123 10 C -0.123 4.123 11 C -0.106 4.106 12 C -0.083 4.083 13 C 0.110 3.890 14 N -0.312 5.312 15 N -0.314 5.314 16 C 0.246 3.754 17 C 0.145 3.855 18 C -0.113 4.113 19 C -0.129 4.129 20 C -0.514 4.514 21 H 0.055 0.945 22 C 0.074 3.926 23 N -0.878 5.878 24 Si 0.895 3.105 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.019 0.981 42 H 0.080 0.920 43 H 0.036 0.964 44 H 0.031 0.969 45 H 0.095 0.905 46 H 0.008 0.992 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.617 16.520 6.000 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.163 5.163 3 C -0.048 4.048 4 N -0.165 5.165 5 C -0.074 4.074 6 C -0.151 4.151 7 C -0.067 4.067 8 C -0.135 4.135 9 C -0.141 4.141 10 C -0.141 4.141 11 C -0.125 4.125 12 C -0.085 4.085 13 C -0.017 4.017 14 N -0.156 5.156 15 N -0.152 5.152 16 C -0.021 4.021 17 C 0.142 3.858 18 C -0.171 4.171 19 C -0.187 4.187 20 C -0.553 4.553 21 H 0.073 0.927 22 C -0.129 4.129 23 N -0.516 5.516 24 Si 0.722 3.278 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.200 1.200 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.130 0.870 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.038 0.962 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.113 0.887 46 H 0.027 0.973 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.681 16.401 5.646 17.427 hybrid contribution -1.270 -0.339 -0.329 1.355 sum 0.411 16.062 5.317 16.924 Atomic orbital electron populations 1.22115 0.76187 1.05630 1.02595 1.45926 1.08394 1.05605 1.56387 1.22222 0.87496 0.86934 1.08111 1.59284 1.29094 0.97487 1.30670 1.22383 0.97311 1.01990 0.85701 1.21064 0.92658 1.01664 0.99744 1.19319 0.95541 0.98730 0.93081 1.20965 0.93722 1.00375 0.98467 1.20984 0.96099 0.99922 0.97105 1.20990 0.99141 1.00752 0.93191 1.20926 0.92721 0.99919 0.98928 1.19988 0.95612 0.98484 0.94393 1.20964 0.88007 0.96230 0.96540 1.74536 1.15651 1.04436 1.20992 1.74007 1.18146 1.01692 1.21341 1.26036 0.85332 0.92676 0.98071 1.16904 0.94043 0.79089 0.95785 1.21563 0.95507 1.01599 0.98466 1.21923 0.97419 1.04769 0.94616 1.20867 1.35395 0.95688 1.03307 0.92656 1.24832 0.95382 0.96036 0.96615 1.69838 1.45940 1.03391 1.32384 0.86536 0.79014 0.78299 0.83929 1.20501 1.21106 1.19956 0.91694 0.90382 0.87003 0.89095 0.89787 0.90090 0.90603 0.86686 0.86485 0.86391 0.86246 0.88540 0.88658 0.96200 0.90086 0.94458 0.94994 0.88670 0.97253 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 8.68 59.84 0.52 1.76 16 2 N -0.47 -9.22 3.21 -121.46 -0.39 -9.61 16 3 C 0.31 5.80 5.10 -318.88 -1.63 4.18 16 4 N -0.44 -6.53 5.05 -175.99 -0.89 -7.42 16 5 C 0.05 0.64 5.92 -3.73 -0.02 0.62 16 6 C -0.11 -1.48 5.27 -27.93 -0.15 -1.63 16 7 C -0.07 -0.94 5.32 -104.60 -0.56 -1.50 16 8 C -0.12 -1.56 9.66 -39.49 -0.38 -1.95 16 9 C -0.12 -1.52 10.05 -39.65 -0.40 -1.92 16 10 C -0.12 -1.49 10.05 -39.66 -0.40 -1.89 16 11 C -0.11 -1.37 9.65 -39.48 -0.38 -1.75 16 12 C -0.08 -1.17 4.66 -104.63 -0.49 -1.65 16 13 C 0.11 1.46 5.25 -5.16 -0.03 1.44 16 14 N -0.31 -6.81 10.24 30.31 0.31 -6.50 16 15 N -0.31 -7.60 11.47 32.99 0.38 -7.23 16 16 C 0.25 5.67 6.27 -154.01 -0.97 4.70 16 17 C 0.14 3.46 0.50 -156.81 -0.08 3.38 16 18 C -0.11 -2.78 7.68 37.16 0.29 -2.49 16 19 C -0.13 -2.88 7.91 37.16 0.29 -2.59 16 20 C -0.51 -13.00 6.57 -34.44 -0.23 -13.23 16 21 H 0.06 1.44 7.60 -52.49 -0.40 1.04 16 22 C 0.07 1.88 5.14 -17.82 -0.09 1.78 16 23 N -0.88 -22.53 9.53 55.43 0.53 -22.00 16 24 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H 0.06 0.89 8.07 -51.93 -0.42 0.48 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.11 1.99 5.91 -51.93 -0.31 1.68 16 31 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 32 H 0.08 0.93 7.25 -51.93 -0.38 0.55 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.25 7.38 -51.92 -0.38 0.86 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 37 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 38 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.10 1.41 7.91 -51.93 -0.41 1.00 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.02 0.46 8.10 -51.93 -0.42 0.04 16 42 H 0.08 2.06 6.36 -51.93 -0.33 1.73 16 43 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.03 0.66 6.19 -51.93 -0.32 0.33 16 45 H 0.09 2.30 6.19 -51.93 -0.32 1.97 16 46 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 47 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 LS Contribution 364.27 15.07 5.49 5.49 Total: -1.00 -29.81 364.27 -11.33 -41.14 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.05 Total: 3.86 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -4.69 Total: -12.73 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.06 Total: -52.76 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.81 -11.33 -41.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646676565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.696 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds