Wall clock time and date at job start Tue Mar 31 2020 15:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36453 * 127.13805 * 2 1 4 4 N 1.38579 * 126.47223 * 0.02562 * 3 2 1 5 5 C 1.47165 * 110.99993 * 69.74893 * 4 3 2 6 6 C 1.52897 * 108.50643 * 52.15488 * 5 4 3 7 7 C 1.50711 * 109.96192 * 50.38179 * 6 5 4 8 8 C 1.38679 * 118.48975 * 163.12854 * 7 6 5 9 9 C 1.38031 * 120.34917 * 179.83832 * 8 7 6 10 10 C 1.38265 * 119.82844 * 359.97438 * 9 8 7 11 11 C 1.38008 * 119.86861 * 0.07010 * 10 9 8 12 12 C 1.37830 * 121.66359 * 343.10739 * 7 6 5 13 13 C 1.46637 * 111.00026 * 192.73193 * 4 3 2 14 14 N 1.31218 * 107.05684 * 179.97438 * 3 2 1 15 15 N 1.28529 * 109.85868 * 359.73253 * 14 3 2 16 16 C 1.30297 * 110.05469 * 0.44653 * 15 14 3 17 17 C 1.50693 * 126.34966 * 179.82217 * 16 15 14 18 18 C 1.52999 * 109.47065 * 2.56395 * 17 16 15 19 19 C 1.53005 * 109.47016 * 122.56401 * 17 16 15 20 20 C 1.50703 * 109.47243 * 242.56152 * 17 16 15 21 21 H 1.07998 * 119.99757 * 358.86836 * 20 17 16 22 22 C 1.37884 * 120.00024 * 178.87069 * 20 17 16 23 23 N 1.31513 * 119.99729 * 5.55970 * 22 20 17 24 24 Si 1.86794 * 119.99863 * 185.56088 * 22 20 17 25 25 H 1.48506 * 109.47078 * 94.91236 * 24 22 20 26 26 H 1.48496 * 109.47193 * 214.90853 * 24 22 20 27 27 H 1.48493 * 109.47200 * 334.91487 * 24 22 20 28 28 H 1.08996 * 109.47113 * 271.20292 * 1 2 3 29 29 H 1.09003 * 109.47265 * 31.20484 * 1 2 3 30 30 H 1.09000 * 109.47180 * 151.20350 * 1 2 3 31 31 H 1.09002 * 109.63124 * 171.85781 * 5 4 3 32 32 H 1.09000 * 109.63125 * 292.24880 * 5 4 3 33 33 H 1.08997 * 109.38830 * 170.54002 * 6 5 4 34 34 H 1.09008 * 109.38644 * 290.33503 * 6 5 4 35 35 H 1.08002 * 119.82443 * 359.86308 * 8 7 6 36 36 H 1.08003 * 120.08222 * 179.97438 * 9 8 7 37 37 H 1.08006 * 120.06442 * 180.09496 * 10 9 8 38 38 H 1.07999 * 119.81335 * 180.02562 * 11 10 9 39 39 H 1.08994 * 109.29784 * 49.45442 * 13 4 3 40 40 H 1.09005 * 109.29652 * 168.82772 * 13 4 3 41 41 H 1.08999 * 109.47511 * 54.19718 * 18 17 16 42 42 H 1.09001 * 109.46706 * 174.19502 * 18 17 16 43 43 H 1.09000 * 109.46998 * 294.18752 * 18 17 16 44 44 H 1.08998 * 109.47297 * 67.09551 * 19 17 16 45 45 H 1.09000 * 109.47011 * 187.09386 * 19 17 16 46 46 H 1.08996 * 109.46958 * 307.08948 * 19 17 16 47 47 H 0.96997 * 119.99800 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2888 1.0878 0.0000 4 7 1.8977 2.4173 0.0005 5 6 1.2932 2.7887 1.2898 6 6 2.2530 2.3862 2.4098 7 6 3.6353 2.9100 2.1158 8 6 4.5560 2.9649 3.1514 9 6 5.8339 3.4348 2.9243 10 6 6.1981 3.8524 1.6575 11 6 5.2823 3.7990 0.6264 12 6 3.9968 3.3293 0.8536 13 6 3.0304 3.2983 -0.3014 14 7 3.5212 0.6372 0.0006 15 7 3.5162 -0.6480 0.0065 16 6 2.2905 -1.0901 0.0006 17 6 1.8621 -2.5349 0.0008 18 6 3.0984 -3.4334 0.0737 19 6 0.9661 -2.8009 1.2121 20 6 1.0985 -2.8326 -1.2639 21 1 0.9236 -2.0490 -1.9862 22 6 0.6232 -4.1054 -1.4988 23 7 0.7397 -5.0321 -0.5729 24 14 -0.1862 -4.5135 -3.1320 25 1 0.8218 -5.1010 -4.0509 26 1 -1.2827 -5.4900 -2.9108 27 1 -0.7408 -3.2740 -3.7330 28 1 -0.3633 0.0216 1.0274 29 1 -0.3634 0.8790 -0.5324 30 1 -0.3633 -0.9006 -0.4950 31 1 1.1267 3.8655 1.3195 32 1 0.3435 2.2679 1.4125 33 1 1.9018 2.8019 3.3542 34 1 2.2876 1.2992 2.4835 35 1 4.2718 2.6379 4.1407 36 1 6.5474 3.4761 3.7340 37 1 7.1974 4.2193 1.4752 38 1 5.5678 4.1250 -0.3628 39 1 3.5435 2.9333 -1.1911 40 1 2.6621 4.3068 -0.4898 41 1 3.7047 -3.1482 0.9334 42 1 2.7865 -4.4726 0.1777 43 1 3.6845 -3.3195 -0.8382 44 1 0.0290 -2.2561 1.0976 45 1 0.7591 -3.8687 1.2834 46 1 1.4718 -2.4676 2.1183 47 1 0.4050 -5.9274 -0.7379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646676565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:59 Heat of formation + Delta-G solvation = 101.172476 kcal Electronic energy + Delta-G solvation = -29037.870673 eV Core-core repulsion = 25414.434872 eV Total energy + Delta-G solvation = -3623.435801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.86987 -41.18809 -38.37552 -37.44682 -35.53370 -33.86410 -33.35767 -32.13109 -30.42992 -29.52103 -28.39801 -27.59504 -27.27209 -25.96846 -24.67714 -23.50588 -23.09417 -22.45646 -20.80116 -20.30364 -18.43551 -17.88354 -17.49356 -17.17631 -16.87018 -16.84086 -16.13059 -15.83190 -15.47567 -15.30713 -15.02629 -14.74147 -14.49901 -14.13100 -14.02171 -13.85803 -13.57442 -13.39517 -13.25167 -13.12363 -12.92473 -12.87344 -12.69887 -12.57568 -12.51329 -12.37683 -12.25541 -12.22298 -11.81834 -11.70477 -11.65771 -11.28856 -10.93936 -10.81882 -10.50661 -10.34894 -9.63415 -9.41881 -9.16768 -8.07652 -6.23271 0.48821 0.51232 1.05266 1.42690 1.47869 1.51277 1.54676 2.07458 2.44609 2.81146 2.86425 3.17374 3.62324 3.73449 3.84287 3.90011 3.98480 4.04866 4.13145 4.23071 4.32624 4.40501 4.43030 4.50089 4.54592 4.55409 4.67704 4.71422 4.76497 4.80334 4.84203 4.88426 4.98279 5.00305 5.10386 5.13782 5.20877 5.26596 5.36440 5.51290 5.55893 5.56482 5.63474 5.64497 5.68466 5.84150 5.96987 6.07400 6.16099 6.27384 6.40582 6.75227 7.43886 8.03552 8.93307 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021348 B = 0.003702 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.289755 B = 7561.874282 C = 7823.578973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.471 5.471 3 C 0.334 3.666 4 N -0.441 5.441 5 C 0.054 3.946 6 C -0.108 4.108 7 C -0.087 4.087 8 C -0.134 4.134 9 C -0.131 4.131 10 C -0.129 4.129 11 C -0.119 4.119 12 C -0.098 4.098 13 C 0.109 3.891 14 N -0.342 5.342 15 N -0.349 5.349 16 C 0.226 3.774 17 C 0.142 3.858 18 C -0.100 4.100 19 C -0.114 4.114 20 C -0.521 4.521 21 H 0.043 0.957 22 C 0.040 3.960 23 N -0.895 5.895 24 Si 0.948 3.052 25 H -0.286 1.286 26 H -0.278 1.278 27 H -0.272 1.272 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.037 0.963 35 H 0.125 0.875 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.078 0.922 40 H 0.133 0.867 41 H 0.019 0.981 42 H 0.068 0.932 43 H 0.018 0.982 44 H 0.045 0.955 45 H 0.076 0.924 46 H 0.012 0.988 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 18.796 6.201 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.164 5.164 3 C -0.023 4.023 4 N -0.163 5.163 5 C -0.072 4.072 6 C -0.146 4.146 7 C -0.088 4.088 8 C -0.152 4.152 9 C -0.148 4.148 10 C -0.147 4.147 11 C -0.138 4.138 12 C -0.099 4.099 13 C -0.018 4.018 14 N -0.186 5.186 15 N -0.187 5.187 16 C -0.044 4.044 17 C 0.139 3.861 18 C -0.159 4.159 19 C -0.173 4.173 20 C -0.560 4.560 21 H 0.061 0.939 22 C -0.162 4.162 23 N -0.532 5.532 24 Si 0.774 3.226 25 H -0.212 1.212 26 H -0.203 1.203 27 H -0.196 1.196 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.143 0.857 32 H 0.114 0.886 33 H 0.124 0.876 34 H 0.056 0.944 35 H 0.143 0.857 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.152 0.848 39 H 0.097 0.903 40 H 0.150 0.850 41 H 0.038 0.962 42 H 0.087 0.913 43 H 0.037 0.963 44 H 0.064 0.936 45 H 0.095 0.905 46 H 0.031 0.969 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.490 18.691 5.856 19.593 hybrid contribution -0.855 -0.933 -0.367 1.317 sum -0.365 17.759 5.490 18.591 Atomic orbital electron populations 1.22319 0.74107 1.05941 1.04370 1.46030 1.09559 1.04899 1.55869 1.22626 0.86580 0.88348 1.04728 1.59480 1.29306 0.95278 1.32257 1.22590 0.96959 1.04223 0.83474 1.21031 0.92805 0.99188 1.01601 1.19551 0.96311 0.99386 0.93528 1.21238 0.94265 1.00685 0.98968 1.21325 0.96233 0.99303 0.97990 1.21343 1.00129 1.00201 0.92978 1.21224 0.92652 0.99927 0.99976 1.20144 0.96273 0.99035 0.94478 1.21096 0.87691 0.97434 0.95591 1.74446 1.17451 1.03454 1.23214 1.73895 1.19303 1.03194 1.22296 1.25682 0.85823 0.93021 0.99830 1.16808 0.93476 0.79875 0.95907 1.21412 0.95866 1.01185 0.97426 1.21731 0.97773 1.03618 0.94164 1.20908 1.35759 0.95628 1.03668 0.93887 1.25386 0.95882 0.95903 0.98994 1.69925 1.46286 1.03545 1.33435 0.85707 0.78134 0.78085 0.80653 1.21226 1.20328 1.19641 0.89274 0.87668 0.88926 0.85656 0.88583 0.87603 0.94411 0.85742 0.84361 0.84087 0.84769 0.90341 0.84968 0.96155 0.91274 0.96315 0.93633 0.90489 0.96856 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.24 8.68 127.77 1.11 3.35 16 2 N -0.47 -18.16 3.21 -538.20 -1.73 -19.89 16 3 C 0.33 12.29 5.10 260.11 1.33 13.62 16 4 N -0.44 -11.96 5.05 -710.70 -3.59 -15.55 16 5 C 0.05 1.11 5.92 86.22 0.51 1.62 16 6 C -0.11 -2.64 5.27 29.82 0.16 -2.48 16 7 C -0.09 -2.37 5.32 -19.85 -0.11 -2.48 16 8 C -0.13 -3.42 9.66 22.33 0.22 -3.20 16 9 C -0.13 -3.03 10.05 22.23 0.22 -2.80 16 10 C -0.13 -2.92 10.05 22.22 0.22 -2.69 16 11 C -0.12 -2.92 9.65 22.33 0.22 -2.70 16 12 C -0.10 -2.59 4.66 -19.87 -0.09 -2.69 16 13 C 0.11 2.67 5.25 85.58 0.45 3.12 16 14 N -0.34 -15.07 10.24 -58.00 -0.59 -15.66 16 15 N -0.35 -17.31 11.47 -49.54 -0.57 -17.88 16 16 C 0.23 10.53 6.27 137.63 0.86 11.39 16 17 C 0.14 6.92 0.50 -53.67 -0.03 6.89 16 18 C -0.10 -5.11 7.68 71.98 0.55 -4.55 16 19 C -0.11 -5.14 7.91 71.98 0.57 -4.57 16 20 C -0.52 -26.63 6.57 25.60 0.17 -26.46 16 21 H 0.04 2.26 7.60 -2.91 -0.02 2.24 16 22 C 0.04 2.01 5.14 84.66 0.43 2.45 16 23 N -0.89 -46.18 9.53 21.45 0.20 -45.97 16 24 Si 0.95 40.98 29.54 68.60 2.03 43.01 16 25 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H 0.09 2.23 8.07 -2.39 -0.02 2.21 16 29 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.09 3.20 5.91 -2.39 -0.01 3.19 16 31 H 0.13 1.79 8.05 -2.39 -0.02 1.77 16 32 H 0.10 1.76 7.25 -2.39 -0.02 1.74 16 33 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.04 1.22 7.38 -2.38 -0.02 1.20 16 35 H 0.12 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 37 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.08 2.21 7.91 -2.39 -0.02 2.19 16 40 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 41 H 0.02 0.97 8.10 -2.39 -0.02 0.95 16 42 H 0.07 3.62 6.36 -2.39 -0.02 3.61 16 43 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.04 1.86 6.19 -2.39 -0.01 1.85 16 45 H 0.08 3.75 6.19 -2.39 -0.01 3.73 16 46 H 0.01 0.54 8.13 -2.39 -0.02 0.52 16 47 H 0.26 13.10 8.31 -92.71 -0.77 12.33 16 Total: -1.00 -65.79 364.27 3.51 -62.28 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.97 Total: 21.86 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 6.79 Total: -12.20 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -6.28 Total: -114.95 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -65.79 3.51 -62.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646676565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.457 kcal (2) G-P(sol) polarization free energy of solvation -65.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds