Wall clock time and date at job start Tue Mar 31 2020 15:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.52661 * 2 1 4 4 C 1.53116 * 109.50363 * 120.09796 * 2 1 3 5 5 C 1.53117 * 109.15636 * 177.59669 * 4 2 1 6 6 C 1.53033 * 109.28068 * 302.34581 * 5 4 2 7 7 N 1.46848 * 109.52260 * 59.18342 * 6 5 4 8 8 C 1.38402 * 111.00117 * 174.16156 * 7 6 5 9 9 N 1.31389 * 126.36966 * 58.88024 * 8 7 6 10 10 N 1.28511 * 110.07146 * 179.80367 * 9 8 7 11 11 C 1.31245 * 109.93939 * 0.38966 * 10 9 8 12 12 C 1.47875 * 126.47401 * 179.88440 * 11 10 9 13 13 C 1.39953 * 120.02092 * 341.74501 * 12 11 10 14 14 C 1.38333 * 120.35566 * 180.27504 * 13 12 11 15 15 C 1.37760 * 120.40269 * 359.44678 * 14 13 12 16 16 C 1.40783 * 120.03229 * 0.27459 * 15 14 13 17 17 C 1.41435 * 120.17447 * 179.97438 * 16 15 14 18 18 H 1.08006 * 120.00146 * 155.92201 * 17 16 15 19 19 C 1.39916 * 119.99966 * 335.92886 * 17 16 15 20 20 N 1.30839 * 120.00118 * 342.10741 * 19 17 16 21 21 Si 1.86797 * 120.00050 * 162.11024 * 19 17 16 22 22 H 1.48497 * 109.47389 * 89.99819 * 21 19 17 23 23 H 1.48497 * 109.47308 * 209.99989 * 21 19 17 24 24 H 1.48499 * 109.47346 * 329.99629 * 21 19 17 25 25 C 1.38968 * 120.02621 * 161.46753 * 12 11 10 26 26 N 1.36457 * 126.37404 * 238.92344 * 8 7 6 27 27 C 1.46500 * 127.16221 * 359.94527 * 26 8 7 28 28 C 1.46850 * 111.19495 * 298.25500 * 7 6 5 29 29 H 1.09002 * 109.46663 * 180.09639 * 1 2 3 30 30 H 1.08997 * 109.47447 * 300.09306 * 1 2 3 31 31 H 1.08996 * 109.47443 * 60.09983 * 1 2 3 32 32 H 1.08995 * 109.52341 * 297.49776 * 4 2 1 33 33 H 1.08993 * 109.52206 * 57.63057 * 4 2 1 34 34 H 1.09001 * 109.50769 * 62.29115 * 5 4 2 35 35 H 1.09001 * 109.50290 * 182.40645 * 5 4 2 36 36 H 1.08994 * 109.46376 * 299.16281 * 6 5 4 37 37 H 1.09000 * 109.46509 * 179.19599 * 6 5 4 38 38 H 1.08003 * 119.82369 * 359.97438 * 13 12 11 39 39 H 1.07995 * 119.80100 * 179.72321 * 14 13 12 40 40 H 1.07994 * 119.98217 * 180.25569 * 15 14 13 41 41 H 0.97000 * 119.99610 * 180.02562 * 20 19 17 42 42 H 1.07999 * 120.19306 * 359.97438 * 25 12 11 43 43 H 1.09001 * 109.47322 * 263.45666 * 27 26 8 44 44 H 1.09002 * 109.47222 * 23.45590 * 27 26 8 45 45 H 1.09002 * 109.47774 * 143.45449 * 27 26 8 46 46 H 1.08999 * 109.46183 * 181.75871 * 28 7 6 47 47 H 1.08997 * 109.46170 * 301.73739 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0412 -0.7238 1.2487 5 6 3.5712 -0.7718 1.2106 6 6 4.0230 -1.4728 -0.0725 7 7 3.5093 -0.7419 -1.2380 8 6 4.0067 -1.2730 -2.4153 9 7 3.8608 -2.5094 -2.8351 10 7 4.4458 -2.6621 -3.9691 11 6 5.0077 -1.5349 -4.3382 12 6 5.7772 -1.3013 -5.5792 13 6 6.2908 -2.3859 -6.2992 14 6 7.0165 -2.1751 -7.4579 15 6 7.2322 -0.8962 -7.9225 16 6 6.7182 0.2067 -7.2144 17 6 6.9383 1.5210 -7.6884 18 1 6.2622 2.3158 -7.4098 19 6 8.0318 1.7914 -8.5183 20 7 9.0314 0.9493 -8.5785 21 14 8.0647 3.3547 -9.5402 22 1 8.7049 4.4433 -8.7592 23 1 8.8395 3.1165 -10.7844 24 1 6.6758 3.7470 -9.8897 25 6 5.9859 -0.0049 -6.0344 26 7 4.7405 -0.6101 -3.3556 27 6 5.1568 0.7941 -3.3251 28 6 2.0409 -0.7233 -1.2481 29 1 -0.3633 -1.0277 0.0017 30 1 -0.3634 0.5153 0.8891 31 1 -0.3634 0.5123 -0.8908 32 1 1.7158 -0.1870 2.1397 33 1 1.6444 -1.7387 1.2695 34 1 3.9678 0.2433 1.2297 35 1 3.9396 -1.3234 2.0756 36 1 3.6376 -2.4923 -0.0844 37 1 5.1121 -1.4960 -0.1096 38 1 6.1239 -3.3927 -5.9457 39 1 7.4125 -3.0184 -8.0041 40 1 7.7962 -0.7397 -8.8300 41 1 9.7897 1.1370 -9.1536 42 1 5.5871 0.8346 -5.4844 43 1 4.4547 1.3940 -3.9042 44 1 5.1712 1.1465 -2.2937 45 1 6.1544 0.8869 -3.7546 46 1 1.6905 -0.2022 -2.1389 47 1 1.6649 -1.7464 -1.2543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647672749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:39 Heat of formation + Delta-G solvation = 92.397990 kcal Electronic energy + Delta-G solvation = -27382.655840 eV Core-core repulsion = 23758.839549 eV Total energy + Delta-G solvation = -3623.816291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.48828 -39.31246 -37.58636 -34.79295 -34.49426 -33.75682 -32.22762 -30.66709 -30.00576 -27.86944 -27.33772 -26.84956 -25.38552 -24.58968 -22.55536 -22.31475 -21.15087 -20.28580 -20.21740 -19.58375 -17.60539 -16.81586 -16.19123 -15.84592 -15.50827 -15.12623 -14.82446 -14.80967 -14.60623 -14.29670 -13.92056 -13.48817 -13.34370 -13.05582 -12.93608 -12.77990 -12.58517 -12.21448 -12.15104 -12.11151 -11.79304 -11.31716 -11.29121 -11.26336 -11.12695 -10.98444 -10.85557 -10.71297 -10.59927 -10.55824 -10.32076 -9.89850 -9.78528 -9.54803 -9.35740 -8.90810 -8.77373 -7.65143 -7.26785 -6.88113 -4.49786 1.73319 2.49731 2.68666 2.70365 3.00810 3.03334 3.11004 3.55752 3.74925 3.84320 4.43349 4.52305 4.58022 4.62074 4.86376 4.94196 5.04889 5.11490 5.19479 5.28388 5.35518 5.38766 5.39767 5.48819 5.51297 5.54764 5.64558 5.70499 5.72025 5.72430 5.81359 5.88575 5.91330 5.98119 6.17751 6.19791 6.36524 6.41293 6.68103 6.71614 6.75252 6.92517 7.09608 7.14340 7.30949 7.48545 7.67706 7.83217 7.89862 8.08157 8.45304 8.73854 8.77520 9.12193 10.06904 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019031 B = 0.002780 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.930743 B =10069.479443 C =10895.447362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.080 0.920 4 C -0.117 4.117 5 C -0.116 4.116 6 C 0.067 3.933 7 N -0.461 5.461 8 C 0.319 3.681 9 N -0.313 5.313 10 N -0.293 5.293 11 C 0.261 3.739 12 C -0.012 4.012 13 C -0.185 4.185 14 C -0.108 4.108 15 C -0.144 4.144 16 C 0.108 3.892 17 C -0.463 4.463 18 H 0.078 0.922 19 C 0.077 3.923 20 N -0.792 5.792 21 Si 0.907 3.093 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.260 1.260 25 C -0.212 4.212 26 N -0.463 5.463 27 C 0.078 3.922 28 C 0.073 3.927 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.282 0.718 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.074 0.926 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.119 2.042 14.683 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 H 0.098 0.902 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.060 4.060 7 N -0.186 5.186 8 C -0.037 4.037 9 N -0.158 5.158 10 N -0.134 5.134 11 C -0.003 4.003 12 C -0.015 4.015 13 C -0.206 4.206 14 C -0.127 4.127 15 C -0.164 4.164 16 C 0.105 3.895 17 C -0.493 4.493 18 H 0.096 0.904 19 C -0.141 4.141 20 N -0.418 5.418 21 Si 0.732 3.268 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.184 1.184 25 C -0.233 4.233 26 N -0.154 5.154 27 C -0.065 4.065 28 C -0.055 4.055 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.141 0.859 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.118 0.882 46 H 0.092 0.908 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.168 1.083 14.640 17.308 hybrid contribution 0.335 1.380 -0.501 1.506 sum -8.833 2.462 14.139 16.852 Atomic orbital electron populations 1.21784 0.94575 1.02069 1.01961 1.21189 0.95407 1.00264 0.93865 0.90193 1.21668 0.95455 1.00767 0.97567 1.21612 0.95952 1.01616 0.96175 1.22120 1.00052 0.95808 0.88006 1.58431 1.09450 1.52916 0.97810 1.22026 1.00543 0.88760 0.92325 1.74485 1.20236 1.13814 1.07262 1.74361 1.12422 1.20266 1.06329 1.23416 0.99920 0.84895 0.92024 1.17174 0.99524 0.94991 0.89794 1.20406 1.05461 0.96275 0.98451 1.20671 0.99068 0.96737 0.96182 1.21562 1.02998 0.91007 1.00830 1.17452 0.89336 0.93612 0.89054 1.19506 1.09092 0.94700 1.25992 0.90376 1.25889 0.94319 0.98391 0.95507 1.69807 1.05064 1.35753 1.31134 0.86323 0.79583 0.81436 0.79504 1.19472 1.20014 1.18423 1.21226 1.09469 0.93350 0.99263 1.46211 1.40317 1.12066 1.16812 1.22237 1.02666 0.77381 1.04222 1.22193 0.84082 1.00437 0.98752 0.92547 0.92263 0.92453 0.91558 0.91869 0.90953 0.90920 0.92931 0.90689 0.87890 0.88452 0.85915 0.90686 0.88104 0.90256 0.89196 0.88162 0.90777 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.20 37.16 0.34 -0.73 16 2 C -0.09 -0.77 2.88 -90.54 -0.26 -1.03 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.12 -0.91 5.29 -26.61 -0.14 -1.05 16 5 C -0.12 -0.98 6.09 -26.65 -0.16 -1.14 16 6 C 0.07 0.79 5.35 -3.84 -0.02 0.77 16 7 N -0.46 -6.18 4.61 -174.57 -0.80 -6.99 16 8 C 0.32 5.54 6.41 -318.91 -2.04 3.49 16 9 N -0.31 -6.31 12.16 30.31 0.37 -5.94 16 10 N -0.29 -6.48 11.99 32.59 0.39 -6.09 16 11 C 0.26 5.56 7.70 -153.79 -1.18 4.37 16 12 C -0.01 -0.27 5.86 -105.04 -0.62 -0.89 16 13 C -0.18 -4.19 9.71 -38.90 -0.38 -4.57 16 14 C -0.11 -2.45 10.01 -39.72 -0.40 -2.85 16 15 C -0.14 -3.55 8.70 -38.80 -0.34 -3.89 16 16 C 0.11 2.69 5.58 -106.87 -0.60 2.10 16 17 C -0.46 -11.46 9.05 -37.74 -0.34 -11.80 16 18 H 0.08 1.84 7.91 -52.48 -0.41 1.42 16 19 C 0.08 1.82 5.14 -17.35 -0.09 1.73 16 20 N -0.79 -19.37 10.93 55.55 0.61 -18.76 16 21 Si 0.91 17.64 29.59 -169.99 -5.03 12.61 16 22 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 25 C -0.21 -4.84 8.50 -38.47 -0.33 -5.17 16 26 N -0.46 -8.36 3.23 -122.06 -0.39 -8.76 16 27 C 0.08 1.12 9.39 59.85 0.56 1.69 16 28 C 0.07 0.86 4.68 -3.83 -0.02 0.84 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 38 H 0.10 2.25 7.96 -52.48 -0.42 1.83 16 39 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 40 H 0.12 3.10 6.12 -52.49 -0.32 2.78 16 41 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 42 H 0.10 2.08 4.91 -52.49 -0.26 1.82 16 43 H 0.08 1.06 7.74 -51.93 -0.40 0.66 16 44 H 0.09 1.08 8.08 -51.93 -0.42 0.66 16 45 H 0.10 1.54 6.57 -51.93 -0.34 1.20 16 46 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -28.31 376.61 -12.40 -40.71 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.20 Total: 5.66 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -6.01 Total: -18.12 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.17 Total: -46.53 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.31 -12.40 -40.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647672749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.105 kcal (2) G-P(sol) polarization free energy of solvation -28.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds