Wall clock time and date at job start Tue Mar 31 2020 15:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.52661 * 2 1 4 4 C 1.53116 * 109.50363 * 120.09796 * 2 1 3 5 5 C 1.53117 * 109.15636 * 177.59669 * 4 2 1 6 6 C 1.53033 * 109.28068 * 302.34581 * 5 4 2 7 7 N 1.46848 * 109.52260 * 59.18342 * 6 5 4 8 8 C 1.38402 * 111.00117 * 174.16156 * 7 6 5 9 9 N 1.31389 * 126.36966 * 58.88024 * 8 7 6 10 10 N 1.28511 * 110.07146 * 179.80367 * 9 8 7 11 11 C 1.31245 * 109.93939 * 0.38966 * 10 9 8 12 12 C 1.47875 * 126.47401 * 179.88440 * 11 10 9 13 13 C 1.39953 * 120.02092 * 341.74501 * 12 11 10 14 14 C 1.38333 * 120.35566 * 180.27504 * 13 12 11 15 15 C 1.37760 * 120.40269 * 359.44678 * 14 13 12 16 16 C 1.40783 * 120.03229 * 0.27459 * 15 14 13 17 17 C 1.41435 * 120.17447 * 179.97438 * 16 15 14 18 18 H 1.08006 * 120.00146 * 155.92201 * 17 16 15 19 19 C 1.39916 * 119.99966 * 335.92886 * 17 16 15 20 20 N 1.30839 * 120.00118 * 342.10741 * 19 17 16 21 21 Si 1.86797 * 120.00050 * 162.11024 * 19 17 16 22 22 H 1.48497 * 109.47389 * 89.99819 * 21 19 17 23 23 H 1.48497 * 109.47308 * 209.99989 * 21 19 17 24 24 H 1.48499 * 109.47346 * 329.99629 * 21 19 17 25 25 C 1.38968 * 120.02621 * 161.46753 * 12 11 10 26 26 N 1.36457 * 126.37404 * 238.92344 * 8 7 6 27 27 C 1.46500 * 127.16221 * 359.94527 * 26 8 7 28 28 C 1.46850 * 111.19495 * 298.25500 * 7 6 5 29 29 H 1.09002 * 109.46663 * 180.09639 * 1 2 3 30 30 H 1.08997 * 109.47447 * 300.09306 * 1 2 3 31 31 H 1.08996 * 109.47443 * 60.09983 * 1 2 3 32 32 H 1.08995 * 109.52341 * 297.49776 * 4 2 1 33 33 H 1.08993 * 109.52206 * 57.63057 * 4 2 1 34 34 H 1.09001 * 109.50769 * 62.29115 * 5 4 2 35 35 H 1.09001 * 109.50290 * 182.40645 * 5 4 2 36 36 H 1.08994 * 109.46376 * 299.16281 * 6 5 4 37 37 H 1.09000 * 109.46509 * 179.19599 * 6 5 4 38 38 H 1.08003 * 119.82369 * 359.97438 * 13 12 11 39 39 H 1.07995 * 119.80100 * 179.72321 * 14 13 12 40 40 H 1.07994 * 119.98217 * 180.25569 * 15 14 13 41 41 H 0.97000 * 119.99610 * 180.02562 * 20 19 17 42 42 H 1.07999 * 120.19306 * 359.97438 * 25 12 11 43 43 H 1.09001 * 109.47322 * 263.45666 * 27 26 8 44 44 H 1.09002 * 109.47222 * 23.45590 * 27 26 8 45 45 H 1.09002 * 109.47774 * 143.45449 * 27 26 8 46 46 H 1.08999 * 109.46183 * 181.75871 * 28 7 6 47 47 H 1.08997 * 109.46170 * 301.73739 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0412 -0.7238 1.2487 5 6 3.5712 -0.7718 1.2106 6 6 4.0230 -1.4728 -0.0725 7 7 3.5093 -0.7419 -1.2380 8 6 4.0067 -1.2730 -2.4153 9 7 3.8608 -2.5094 -2.8351 10 7 4.4458 -2.6621 -3.9691 11 6 5.0077 -1.5349 -4.3382 12 6 5.7772 -1.3013 -5.5792 13 6 6.2908 -2.3859 -6.2992 14 6 7.0165 -2.1751 -7.4579 15 6 7.2322 -0.8962 -7.9225 16 6 6.7182 0.2067 -7.2144 17 6 6.9383 1.5210 -7.6884 18 1 6.2622 2.3158 -7.4098 19 6 8.0318 1.7914 -8.5183 20 7 9.0314 0.9493 -8.5785 21 14 8.0647 3.3547 -9.5402 22 1 8.7049 4.4433 -8.7592 23 1 8.8395 3.1165 -10.7844 24 1 6.6758 3.7470 -9.8897 25 6 5.9859 -0.0049 -6.0344 26 7 4.7405 -0.6101 -3.3556 27 6 5.1568 0.7941 -3.3251 28 6 2.0409 -0.7233 -1.2481 29 1 -0.3633 -1.0277 0.0017 30 1 -0.3634 0.5153 0.8891 31 1 -0.3634 0.5123 -0.8908 32 1 1.7158 -0.1870 2.1397 33 1 1.6444 -1.7387 1.2695 34 1 3.9678 0.2433 1.2297 35 1 3.9396 -1.3234 2.0756 36 1 3.6376 -2.4923 -0.0844 37 1 5.1121 -1.4960 -0.1096 38 1 6.1239 -3.3927 -5.9457 39 1 7.4125 -3.0184 -8.0041 40 1 7.7962 -0.7397 -8.8300 41 1 9.7897 1.1370 -9.1536 42 1 5.5871 0.8346 -5.4844 43 1 4.4547 1.3940 -3.9042 44 1 5.1712 1.1465 -2.2937 45 1 6.1544 0.8869 -3.7546 46 1 1.6905 -0.2022 -2.1389 47 1 1.6649 -1.7464 -1.2543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647672749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:38 Heat of formation + Delta-G solvation = 80.948755 kcal Electronic energy + Delta-G solvation = -27383.152316 eV Core-core repulsion = 23758.839549 eV Total energy + Delta-G solvation = -3624.312767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.99121 -40.27490 -39.35801 -36.14407 -35.82702 -35.26587 -33.08505 -32.25674 -31.81469 -29.43749 -28.65048 -27.60840 -27.18386 -25.63998 -24.19972 -23.21882 -22.70700 -21.83381 -21.63520 -20.53324 -19.24227 -18.18701 -17.53278 -17.30559 -17.13978 -16.52531 -16.19014 -16.11694 -15.69668 -15.17402 -15.06497 -14.89734 -14.59892 -14.38381 -14.30654 -14.01893 -13.66106 -13.58638 -13.49576 -13.00697 -12.95872 -12.87605 -12.78792 -12.71808 -12.58036 -12.22723 -12.00433 -11.90679 -11.67836 -11.55292 -11.49199 -11.32080 -11.30106 -11.20083 -11.05836 -10.55291 -9.96100 -9.48581 -9.03302 -8.65697 -6.37225 0.11696 0.93703 1.06948 1.17593 1.42028 1.49629 1.56517 1.87772 2.21772 2.58747 2.73527 3.35703 3.63082 3.67173 3.73390 3.83356 3.88062 4.05609 4.12432 4.19001 4.25457 4.31784 4.39208 4.42508 4.55188 4.57362 4.63084 4.65704 4.76723 4.82564 4.83940 4.91112 4.94122 4.96397 5.03894 5.10641 5.18223 5.21896 5.26104 5.34021 5.35043 5.43316 5.51417 5.58696 5.69423 5.85843 5.99520 6.05299 6.14501 6.24611 6.60585 6.89325 6.93258 7.56576 8.31727 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019031 B = 0.002780 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.930743 B =10069.479443 C =10895.447362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 H 0.085 0.915 4 C -0.115 4.115 5 C -0.107 4.107 6 C 0.064 3.936 7 N -0.454 5.454 8 C 0.340 3.660 9 N -0.342 5.342 10 N -0.316 5.316 11 C 0.239 3.761 12 C -0.011 4.011 13 C -0.197 4.197 14 C -0.105 4.105 15 C -0.170 4.170 16 C 0.083 3.917 17 C -0.491 4.491 18 H 0.083 0.917 19 C 0.039 3.961 20 N -0.822 5.822 21 Si 0.980 3.020 22 H -0.261 1.261 23 H -0.270 1.270 24 H -0.259 1.259 25 C -0.214 4.214 26 N -0.461 5.461 27 C 0.074 3.926 28 C 0.072 3.928 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.039 0.961 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.290 0.710 42 H 0.120 0.880 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.019 3.951 16.602 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 H 0.104 0.896 4 C -0.152 4.152 5 C -0.145 4.145 6 C -0.062 4.062 7 N -0.180 5.180 8 C -0.016 4.016 9 N -0.187 5.187 10 N -0.157 5.157 11 C -0.026 4.026 12 C -0.014 4.014 13 C -0.218 4.218 14 C -0.123 4.123 15 C -0.190 4.190 16 C 0.081 3.919 17 C -0.520 4.520 18 H 0.101 0.899 19 C -0.177 4.177 20 N -0.447 5.447 21 Si 0.801 3.199 22 H -0.186 1.186 23 H -0.194 1.194 24 H -0.183 1.183 25 C -0.235 4.235 26 N -0.152 5.152 27 C -0.068 4.068 28 C -0.055 4.055 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.126 0.874 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.100 0.900 42 H 0.138 0.862 43 H 0.110 0.890 44 H 0.137 0.863 45 H 0.109 0.891 46 H 0.082 0.918 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.072 2.987 16.577 19.625 hybrid contribution 0.566 0.735 -0.962 1.337 sum -9.506 3.723 15.614 18.656 Atomic orbital electron populations 1.21772 0.93429 1.02180 1.02740 1.21176 0.96234 1.00034 0.92470 0.89639 1.21683 0.94770 1.00877 0.97888 1.21605 0.96524 1.01754 0.94569 1.22246 0.99552 0.95628 0.88809 1.58784 1.10412 1.52200 0.96609 1.22512 0.98434 0.87929 0.92723 1.74433 1.21481 1.15607 1.07141 1.74262 1.12917 1.21185 1.07315 1.23153 1.01026 0.85788 0.92607 1.17316 0.98972 0.94899 0.90232 1.20566 1.05815 0.96728 0.98700 1.20882 0.98432 0.96869 0.96155 1.21541 1.04470 0.91891 1.01090 1.17803 0.90062 0.94144 0.89906 1.19786 1.09967 0.94830 1.27424 0.89910 1.26716 0.93453 1.01608 0.95935 1.69861 1.05666 1.37542 1.31658 0.85231 0.79542 0.77359 0.77813 1.18579 1.19423 1.18270 1.21406 1.09088 0.94154 0.98860 1.46390 1.39814 1.12921 1.16041 1.22461 1.02346 0.75627 1.06318 1.22297 0.82787 1.00063 1.00347 0.92807 0.90441 0.92737 0.89197 0.92132 0.90250 0.89033 0.94211 0.91556 0.87391 0.86221 0.87148 0.89967 0.86249 0.88966 0.86294 0.89109 0.91820 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.20 71.98 0.66 -1.09 16 2 C -0.08 -1.18 2.88 -10.74 -0.03 -1.21 16 3 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.11 -1.41 5.29 30.67 0.16 -1.25 16 5 C -0.11 -1.48 6.09 30.64 0.19 -1.30 16 6 C 0.06 1.42 5.35 86.32 0.46 1.88 16 7 N -0.45 -11.58 4.61 -706.20 -3.25 -14.84 16 8 C 0.34 11.67 6.41 260.13 1.67 13.34 16 9 N -0.34 -13.94 12.16 -58.02 -0.71 -14.65 16 10 N -0.32 -14.24 11.99 -50.80 -0.61 -14.85 16 11 C 0.24 10.32 7.70 136.23 1.05 11.37 16 12 C -0.01 -0.53 5.86 -20.14 -0.12 -0.64 16 13 C -0.20 -9.13 9.71 22.71 0.22 -8.91 16 14 C -0.11 -4.87 10.01 22.18 0.22 -4.65 16 15 C -0.17 -8.63 8.70 22.78 0.20 -8.43 16 16 C 0.08 4.25 5.58 -21.32 -0.12 4.13 16 17 C -0.49 -24.58 9.05 23.46 0.21 -24.36 16 18 H 0.08 3.91 7.91 -2.91 -0.02 3.89 16 19 C 0.04 1.82 5.14 85.25 0.44 2.26 16 20 N -0.82 -40.70 10.93 21.82 0.24 -40.46 16 21 Si 0.98 35.80 29.59 68.60 2.03 37.83 16 22 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 23 H -0.27 -9.52 7.11 99.48 0.71 -8.82 16 24 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 25 C -0.21 -9.93 8.50 22.99 0.20 -9.73 16 26 N -0.46 -16.46 3.23 -540.09 -1.75 -18.21 16 27 C 0.07 2.03 9.39 127.77 1.20 3.23 16 28 C 0.07 1.61 4.68 86.32 0.40 2.02 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 1.57 8.10 -2.39 -0.02 1.55 16 38 H 0.11 4.82 7.96 -2.91 -0.02 4.80 16 39 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 40 H 0.11 5.79 6.12 -2.91 -0.02 5.78 16 41 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 42 H 0.12 4.93 4.91 -2.91 -0.01 4.91 16 43 H 0.09 2.32 7.74 -2.39 -0.02 2.31 16 44 H 0.12 2.57 8.08 -2.39 -0.02 2.55 16 45 H 0.09 2.72 6.57 -2.39 -0.02 2.71 16 46 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 47 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -62.63 376.61 3.93 -58.70 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.96 Total: 29.83 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 7.01 Total: -23.35 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -6.08 Total: -103.01 kcal Atomic # 14 Polarization: 35.80 SS G_CDS: 2.03 Total: 37.83 kcal Total: -62.63 3.93 -58.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647672749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.646 kcal (2) G-P(sol) polarization free energy of solvation -62.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds