Wall clock time and date at job start Tue Mar 31 2020 15:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47072 * 2 1 4 4 H 1.09003 * 110.35265 * 307.14674 * 3 2 1 5 5 C 1.54596 * 110.30582 * 69.28660 * 3 2 1 6 6 C 1.54939 * 102.91926 * 140.87383 * 5 3 2 7 7 N 1.48538 * 103.22523 * 322.58400 * 6 5 3 8 8 C 1.38407 * 110.99852 * 159.72359 * 7 6 5 9 9 N 1.31380 * 126.36868 * 242.56543 * 8 7 6 10 10 N 1.28508 * 110.07708 * 180.02562 * 9 8 7 11 11 C 1.31254 * 109.93317 * 359.97438 * 10 9 8 12 12 C 1.47873 * 126.47029 * 180.02562 * 11 10 9 13 13 C 1.39954 * 120.02585 * 160.10726 * 12 11 10 14 14 C 1.38329 * 120.35682 * 179.76663 * 13 12 11 15 15 C 1.37750 * 120.40627 * 0.51495 * 14 13 12 16 16 C 1.40794 * 120.03334 * 359.74051 * 15 14 13 17 17 C 1.41433 * 120.17295 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00114 * 31.79514 * 17 16 15 19 19 C 1.39916 * 119.99503 * 211.79189 * 17 16 15 20 20 N 1.30839 * 120.00527 * 2.92644 * 19 17 16 21 21 Si 1.86808 * 119.99781 * 182.91989 * 19 17 16 22 22 H 1.48502 * 109.46674 * 60.00216 * 21 19 17 23 23 H 1.48500 * 109.47115 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47129 * 300.00361 * 21 19 17 25 25 C 1.38965 * 120.02422 * 340.39007 * 12 11 10 26 26 N 1.36458 * 126.37451 * 62.60090 * 8 7 6 27 27 C 1.46504 * 127.16400 * 0.22576 * 26 8 7 28 28 C 1.47900 * 105.82152 * 39.21001 * 7 6 5 29 29 H 1.09005 * 109.47286 * 59.99331 * 1 2 3 30 30 H 1.08998 * 109.47469 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46795 * 299.99646 * 1 2 3 32 32 H 1.09007 * 109.46795 * 240.00354 * 2 1 3 33 33 H 1.08997 * 109.47153 * 120.00383 * 2 1 3 34 34 H 1.08995 * 110.72285 * 259.22724 * 5 3 2 35 35 H 1.08993 * 110.72839 * 22.33879 * 5 3 2 36 36 H 1.08996 * 110.66524 * 204.15090 * 6 5 3 37 37 H 1.09004 * 110.66879 * 81.01528 * 6 5 3 38 38 H 1.08005 * 119.82088 * 0.02562 * 13 12 11 39 39 H 1.08002 * 119.79678 * 180.28449 * 14 13 12 40 40 H 1.08003 * 119.98663 * 179.72198 * 15 14 13 41 41 H 0.96999 * 120.00449 * 180.02562 * 20 19 17 42 42 H 1.07994 * 120.19855 * 359.97438 * 25 12 11 43 43 H 1.08998 * 109.47331 * 270.99052 * 27 26 8 44 44 H 1.09010 * 109.46893 * 30.99023 * 27 26 8 45 45 H 1.09001 * 109.47237 * 150.98512 * 27 26 8 46 46 H 1.08999 * 109.91856 * 94.02027 * 28 7 6 47 47 H 1.08999 * 109.91407 * 215.31508 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5845 2.0057 -0.8146 5 6 1.7353 2.1193 1.3562 6 6 3.0093 2.9618 1.6168 7 7 4.1011 2.0939 1.1057 8 6 5.2391 2.8347 0.8377 9 7 5.8106 2.9879 -0.3353 10 7 6.8487 3.7374 -0.2257 11 6 7.0027 4.1087 1.0238 12 6 8.0767 4.9736 1.5578 13 6 7.9067 5.6242 2.7852 14 6 8.9089 6.4310 3.2934 15 6 10.0810 6.6118 2.5927 16 6 10.2676 5.9696 1.3538 17 6 11.4696 6.1537 0.6316 18 1 12.3975 6.3158 1.1599 19 6 11.4566 6.1257 -0.7672 20 7 10.3245 5.9866 -1.4083 21 14 13.0555 6.2871 -1.7196 22 1 13.9678 5.1762 -1.3470 23 1 12.7722 6.2283 -3.1761 24 1 13.6974 7.5857 -1.3927 25 6 9.2531 5.1456 0.8384 26 7 5.9767 3.5411 1.7427 27 6 5.7301 3.6647 3.1816 28 6 3.5746 1.4668 -0.1260 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 0.8578 2.7610 1.2784 35 1 1.5971 1.3722 2.1377 36 1 3.1345 3.1498 2.6831 37 1 2.9710 3.8990 1.0616 38 1 6.9898 5.4923 3.3406 39 1 8.7699 6.9251 4.2437 40 1 10.8571 7.2468 2.9938 41 1 10.3155 5.9668 -2.3780 42 1 9.3869 4.6488 -0.1111 43 1 5.0713 4.5133 3.3657 44 1 5.2595 2.7528 3.5492 45 1 6.6761 3.8199 3.7003 46 1 3.8665 2.0549 -0.9961 47 1 3.9559 0.4498 -0.2169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650272126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:46 Heat of formation + Delta-G solvation = 103.198165 kcal Electronic energy + Delta-G solvation = -27304.630353 eV Core-core repulsion = 23681.282393 eV Total energy + Delta-G solvation = -3623.347961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.41536 -39.37723 -37.54394 -34.99763 -34.51365 -33.55099 -31.50376 -30.22605 -29.62625 -28.79966 -27.42771 -27.20472 -25.34120 -23.50338 -22.62403 -22.33108 -21.08384 -20.45325 -20.09807 -19.50371 -17.57404 -17.14210 -16.14210 -15.69694 -15.53570 -15.32109 -14.88140 -14.75618 -14.46713 -14.13358 -13.78052 -13.42110 -13.27533 -12.99106 -12.76580 -12.73976 -12.62892 -12.35105 -12.21694 -12.01911 -11.75849 -11.52596 -11.16679 -11.13866 -11.07969 -10.94598 -10.82029 -10.76693 -10.66267 -10.47607 -10.25139 -9.79479 -9.74209 -9.68996 -9.38120 -9.24333 -8.38971 -7.43600 -7.18006 -6.63476 -4.43149 1.82702 2.57829 2.70569 2.87350 3.11269 3.13326 3.16031 3.62881 3.86253 3.97109 4.28616 4.30197 4.50722 4.65826 4.84921 4.93119 4.99918 5.07464 5.08536 5.18372 5.21508 5.28484 5.32826 5.43855 5.50493 5.54245 5.60293 5.60840 5.68729 5.75081 5.75993 5.86358 5.89767 6.03342 6.12544 6.13009 6.23990 6.30247 6.59183 6.62722 6.92297 7.01337 7.09701 7.26738 7.42073 7.49020 7.68023 7.87334 7.98071 8.20992 8.52864 8.84758 8.86338 9.31076 10.26837 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020590 B = 0.002776 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.542224 B =10084.993817 C =11254.270895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.100 4.100 4 H 0.080 0.920 5 C -0.114 4.114 6 C 0.034 3.966 7 N -0.432 5.432 8 C 0.323 3.677 9 N -0.322 5.322 10 N -0.274 5.274 11 C 0.258 3.742 12 C -0.025 4.025 13 C -0.231 4.231 14 C -0.097 4.097 15 C -0.209 4.209 16 C 0.103 3.897 17 C -0.461 4.461 18 H 0.079 0.921 19 C 0.069 3.931 20 N -0.793 5.793 21 Si 0.915 3.085 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.266 1.266 25 C -0.096 4.096 26 N -0.481 5.481 27 C 0.075 3.925 28 C 0.051 3.949 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.284 0.716 42 H 0.142 0.858 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.103 0.897 46 H 0.079 0.921 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.628 -7.863 6.033 19.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.119 4.119 4 H 0.098 0.902 5 C -0.153 4.153 6 C -0.093 4.093 7 N -0.156 5.156 8 C -0.033 4.033 9 N -0.167 5.167 10 N -0.112 5.112 11 C -0.006 4.006 12 C -0.029 4.029 13 C -0.252 4.252 14 C -0.115 4.115 15 C -0.229 4.229 16 C 0.100 3.900 17 C -0.491 4.491 18 H 0.097 0.903 19 C -0.149 4.149 20 N -0.418 5.418 21 Si 0.740 3.260 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.191 1.191 25 C -0.118 4.118 26 N -0.175 5.175 27 C -0.068 4.068 28 C -0.076 4.076 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.159 0.841 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.121 0.879 46 H 0.097 0.903 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.367 -8.438 4.664 18.996 hybrid contribution 0.179 0.836 0.486 0.984 sum -16.188 -7.602 5.150 18.611 Atomic orbital electron populations 1.21787 0.95824 1.01541 1.01818 1.21594 0.95749 0.95324 1.02485 1.22113 0.94671 0.97131 0.97964 0.90159 1.22571 0.96350 0.98936 0.97399 1.23405 0.89706 0.95157 1.01015 1.61474 1.00821 1.24746 1.28580 1.22543 0.96527 0.97645 0.86604 1.74493 1.07091 1.17472 1.17620 1.74474 1.11274 1.11077 1.14383 1.23377 0.90907 0.98541 0.87801 1.17374 0.91503 0.98155 0.95825 1.20499 0.99939 1.07304 0.97502 1.20387 0.94343 0.98602 0.98169 1.21198 0.97729 1.04705 0.99265 1.17596 0.93034 0.88538 0.90821 1.19508 0.94860 1.43794 0.90949 0.90325 1.25934 0.97773 0.92765 0.98388 1.69728 1.26474 1.35282 1.10313 0.86259 0.81715 0.79743 0.78334 1.18944 1.20260 1.19102 1.21733 0.91595 0.98392 1.00081 1.46038 1.22532 1.39576 1.09390 1.22247 1.04372 1.02882 0.77311 1.22951 0.93164 1.00873 0.90574 0.92795 0.92811 0.92672 0.91663 0.91455 0.90546 0.90175 0.89562 0.92718 0.88833 0.88820 0.88516 0.90469 0.84061 0.90867 0.89683 0.87869 0.90299 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.78 37.16 0.36 -0.59 16 2 C -0.11 -0.84 5.09 -26.73 -0.14 -0.98 16 3 C -0.10 -0.88 3.00 -89.26 -0.27 -1.15 16 4 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.11 -0.92 5.87 -24.87 -0.15 -1.07 16 6 C 0.03 0.37 6.03 -1.89 -0.01 0.36 16 7 N -0.43 -5.97 5.31 -170.56 -0.91 -6.88 16 8 C 0.32 5.84 7.03 -318.92 -2.24 3.60 16 9 N -0.32 -6.97 10.67 30.31 0.32 -6.64 16 10 N -0.27 -6.68 12.01 32.59 0.39 -6.29 16 11 C 0.26 5.81 7.68 -153.79 -1.18 4.63 16 12 C -0.03 -0.60 5.85 -105.04 -0.61 -1.22 16 13 C -0.23 -4.83 8.64 -38.91 -0.34 -5.17 16 14 C -0.10 -2.02 10.01 -39.73 -0.40 -2.42 16 15 C -0.21 -4.88 9.79 -38.79 -0.38 -5.26 16 16 C 0.10 2.69 5.55 -106.87 -0.59 2.09 16 17 C -0.46 -12.06 9.06 -37.74 -0.34 -12.40 16 18 H 0.08 1.95 7.85 -52.49 -0.41 1.53 16 19 C 0.07 1.75 5.36 -17.35 -0.09 1.66 16 20 N -0.79 -21.15 10.67 55.55 0.59 -20.56 16 21 Si 0.91 19.02 29.56 -169.99 -5.02 13.99 16 22 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 C -0.10 -2.55 8.30 -38.47 -0.32 -2.86 16 26 N -0.48 -8.74 3.23 -122.06 -0.39 -9.14 16 27 C 0.07 0.98 8.36 59.85 0.50 1.48 16 28 C 0.05 0.64 6.13 -2.75 -0.02 0.62 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.32 7.58 -51.92 -0.39 -0.07 16 32 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.07 0.51 7.99 -51.93 -0.42 0.10 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.59 7.76 -51.93 -0.40 0.19 16 36 H 0.09 0.81 7.28 -51.93 -0.38 0.43 16 37 H 0.05 0.67 7.99 -51.93 -0.42 0.25 16 38 H 0.09 1.63 5.11 -52.48 -0.27 1.37 16 39 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 41 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 42 H 0.14 4.03 6.07 -52.49 -0.32 3.71 16 43 H 0.07 0.81 8.02 -51.93 -0.42 0.40 16 44 H 0.08 0.92 7.99 -51.92 -0.41 0.50 16 45 H 0.10 1.38 6.07 -51.93 -0.32 1.07 16 46 H 0.08 1.15 6.84 -51.93 -0.36 0.80 16 47 H 0.09 1.06 7.68 -51.93 -0.40 0.66 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -30.52 373.66 -12.60 -43.12 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.00 Total: 5.44 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -6.21 Total: -18.68 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.01 Total: -49.51 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.52 -12.60 -43.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650272126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.319 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds