Wall clock time and date at job start Tue Mar 31 2020 14:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39715 * 119.99658 * 130.88031 * 3 2 1 5 5 C 1.37596 * 120.00283 * 179.71926 * 4 3 2 6 6 C 1.39750 * 119.99725 * 0.53021 * 5 4 3 7 7 C 1.47688 * 120.00581 * 179.72124 * 6 5 4 8 8 O 1.21572 * 120.00137 * 217.86540 * 7 6 5 9 9 N 1.34774 * 119.99713 * 37.86350 * 7 6 5 10 10 C 1.46931 * 120.63430 * 5.64066 * 9 7 6 11 11 C 1.53623 * 108.54273 * 126.36488 * 10 9 7 12 12 C 1.53045 * 109.24127 * 54.85891 * 11 10 9 13 13 C 1.53039 * 109.53527 * 298.50887 * 12 11 10 14 14 C 1.46925 * 120.62855 * 185.91711 * 9 7 6 15 15 H 1.09002 * 109.58646 * 113.80349 * 14 9 7 16 16 C 1.52994 * 109.58750 * 353.51758 * 14 9 7 17 17 N 1.46500 * 109.47098 * 179.35665 * 16 14 9 18 18 C 1.46502 * 120.00042 * 275.72053 * 17 16 14 19 19 C 1.36934 * 120.00338 * 95.72302 * 17 16 14 20 20 H 1.08009 * 119.99546 * 16.81359 * 19 17 16 21 21 C 1.38810 * 120.00407 * 196.81697 * 19 17 16 22 22 N 1.31614 * 120.00068 * 18.36547 * 21 19 17 23 23 Si 1.86800 * 119.99878 * 198.36775 * 21 19 17 24 24 H 1.48497 * 109.47080 * 94.99158 * 23 21 19 25 25 H 1.48499 * 109.47001 * 214.98863 * 23 21 19 26 26 H 1.48495 * 109.47307 * 334.98589 * 23 21 19 27 27 C 1.39745 * 119.98772 * 359.74448 * 6 5 4 28 28 C 1.37595 * 119.99935 * 359.97438 * 27 6 5 29 29 H 4.51949 * 14.06421 * 0.02562 * 4 2 1 30 30 H 1.08008 * 119.99477 * 0.02562 * 4 3 2 31 31 H 1.08005 * 120.00207 * 180.26005 * 5 4 3 32 32 H 1.09003 * 109.58744 * 246.20074 * 10 9 7 33 33 H 1.08995 * 109.58426 * 6.62266 * 10 9 7 34 34 H 1.08999 * 109.63526 * 294.86696 * 11 10 9 35 35 H 1.09006 * 109.42811 * 174.72603 * 11 10 9 36 36 H 1.09000 * 109.45862 * 178.48812 * 12 11 10 37 37 H 1.09006 * 109.45882 * 58.52970 * 12 11 10 38 38 H 1.08996 * 109.49515 * 301.40920 * 13 12 11 39 39 H 1.09004 * 109.49006 * 181.31475 * 13 12 11 40 40 H 1.08997 * 109.47356 * 299.35456 * 16 14 9 41 41 H 1.09000 * 109.47189 * 59.35744 * 16 14 9 42 42 H 1.09000 * 109.47281 * 94.88951 * 18 17 16 43 43 H 1.09004 * 109.47025 * 214.89408 * 18 17 16 44 44 H 1.09000 * 109.47102 * 334.88731 * 18 17 16 45 45 H 0.96994 * 120.00174 * 180.02562 * 22 21 19 46 46 H 1.08003 * 119.99466 * 180.02562 * 27 6 5 47 47 H 1.08004 * 119.99833 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3042 0.7929 -0.9149 5 6 4.6801 0.7980 -0.9112 6 6 5.3793 0.0023 0.0004 7 6 6.8562 0.0030 0.0004 8 8 7.4646 -1.0302 0.2014 9 7 7.5295 1.1490 -0.2224 10 6 6.8136 2.4263 -0.3443 11 6 7.4259 3.4262 0.6484 12 6 8.9329 3.5246 0.4003 13 6 9.5802 2.1575 0.6332 14 6 8.9928 1.1440 -0.3540 15 1 9.2692 1.4223 -1.3710 16 6 9.5313 -0.2533 -0.0403 17 7 10.9889 -0.2593 -0.1872 18 6 11.5912 -0.4604 -1.5074 19 6 11.7884 -0.0770 0.9094 20 1 11.3799 -0.1992 1.9018 21 6 13.1237 0.2651 0.7458 22 7 13.5400 0.7628 -0.3993 23 14 14.3298 0.0188 2.1508 24 1 15.0127 -1.2904 1.9931 25 1 15.3386 1.1084 2.1339 26 1 13.5971 0.0426 3.4421 27 6 4.6808 -0.7944 0.9115 28 6 3.3049 -0.7949 0.9114 29 1 -1.0500 -0.0001 0.0008 30 1 2.7637 1.4051 -1.6217 31 1 5.2198 1.4137 -1.6156 32 1 6.9159 2.8070 -1.3606 33 1 5.7591 2.2778 -0.1119 34 1 7.2465 3.0862 1.6683 35 1 6.9689 4.4054 0.5051 36 1 9.3668 4.2532 1.0851 37 1 9.1119 3.8408 -0.6274 38 1 9.3805 1.8296 1.6533 39 1 10.6566 2.2338 0.4791 40 1 9.2681 -0.5229 0.9825 41 1 9.0936 -0.9747 -0.7303 42 1 11.8085 0.5076 -1.9590 43 1 12.5157 -1.0282 -1.4023 44 1 10.8975 -1.0104 -2.1433 45 1 14.4731 1.0015 -0.5137 46 1 5.2211 -1.4091 1.6164 47 1 2.7650 -1.4110 1.6153 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691790364.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:30 Heat of formation + Delta-G solvation = 92.386483 kcal Electronic energy + Delta-G solvation = -27972.166984 eV Core-core repulsion = 24316.057443 eV Total energy + Delta-G solvation = -3656.109541 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.69012 -38.94795 -37.02861 -35.48722 -34.16211 -32.68311 -32.00218 -31.25820 -30.49440 -29.83137 -26.58646 -25.78505 -24.79392 -23.88487 -23.07764 -22.19834 -20.74260 -20.34595 -19.28097 -19.12435 -17.05406 -16.54470 -16.19053 -15.88679 -15.27970 -14.97092 -14.79616 -14.51062 -14.20761 -13.99598 -13.72105 -13.71773 -13.40574 -13.19522 -13.01554 -12.63964 -12.55138 -12.30745 -12.17972 -11.69366 -11.50254 -11.38473 -11.14336 -10.86461 -10.82974 -10.78327 -10.60312 -10.50853 -10.34207 -10.12799 -9.99235 -9.84604 -9.69727 -9.23343 -9.00672 -8.72901 -8.35386 -8.12775 -6.69537 -5.63896 -3.01606 0.39456 1.10225 2.38732 2.44515 3.07343 3.24744 3.44629 3.51874 3.52895 3.74037 3.89378 4.51026 4.59648 4.61926 4.66349 4.90494 5.04065 5.08041 5.21031 5.23208 5.26380 5.46420 5.52504 5.57526 5.63121 5.68589 5.72676 5.78119 5.98727 6.01494 6.03599 6.11827 6.13213 6.14025 6.25460 6.30797 6.53915 6.60130 6.61868 6.83741 6.87540 7.01488 7.16180 7.21923 7.38352 7.50612 7.69909 7.79294 7.91283 8.39190 8.52145 9.33982 10.00586 10.48119 11.41085 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.022235 B = 0.002969 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.994310 B = 9427.023263 C = 9893.149045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.149 4.149 3 C 0.020 3.980 4 C -0.103 4.103 5 C -0.092 4.092 6 C -0.110 4.110 7 C 0.548 3.452 8 O -0.517 6.517 9 N -0.597 5.597 10 C 0.094 3.906 11 C -0.133 4.133 12 C -0.121 4.121 13 C -0.117 4.117 14 C 0.124 3.876 15 H 0.063 0.937 16 C 0.165 3.835 17 N -0.602 5.602 18 C 0.162 3.838 19 C -0.240 4.240 20 H 0.068 0.932 21 C -0.004 4.004 22 N -0.908 5.908 23 Si 0.897 3.103 24 H -0.290 1.290 25 H -0.294 1.294 26 H -0.281 1.281 27 C -0.066 4.066 28 C -0.101 4.101 29 H 0.224 0.776 30 H 0.131 0.869 31 H 0.138 0.862 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.025 0.975 43 H 0.045 0.955 44 H -0.004 1.004 45 H 0.250 0.750 46 H 0.139 0.861 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.533 4.393 -1.031 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.149 4.149 3 C 0.020 3.980 4 C -0.121 4.121 5 C -0.110 4.110 6 C -0.113 4.113 7 C 0.336 3.664 8 O -0.394 6.394 9 N -0.330 5.330 10 C -0.029 4.029 11 C -0.171 4.171 12 C -0.159 4.159 13 C -0.155 4.155 14 C 0.019 3.981 15 H 0.081 0.919 16 C 0.038 3.962 17 N -0.326 5.326 18 C 0.017 3.983 19 C -0.370 4.370 20 H 0.086 0.914 21 C -0.201 4.201 22 N -0.554 5.554 23 Si 0.728 3.272 24 H -0.217 1.217 25 H -0.221 1.221 26 H -0.206 1.206 27 C -0.084 4.084 28 C -0.119 4.119 29 H 0.241 0.759 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.015 0.985 45 H 0.060 0.940 46 H 0.157 0.843 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.982 3.875 -0.975 23.327 hybrid contribution 0.519 0.239 0.646 0.862 sum -22.464 4.114 -0.329 22.840 Atomic orbital electron populations 1.24902 0.95771 0.99256 0.99275 1.20059 0.92034 1.01400 1.01381 1.16128 0.86589 0.98190 0.97080 1.21106 0.93729 0.98952 0.98321 1.21417 0.93869 0.97451 0.98303 1.20310 0.94107 0.98664 0.98251 1.18292 0.86386 0.84038 0.77708 1.90898 1.67811 1.32413 1.48231 1.48377 1.08449 1.06087 1.70084 1.22226 0.96832 0.84341 0.99500 1.21993 0.97138 0.98388 0.99558 1.21579 0.94180 0.98751 1.01374 1.21836 1.02575 0.92316 0.98742 1.22586 0.75086 1.01656 0.98738 0.91896 1.21505 0.82965 0.90773 1.00955 1.44346 1.00129 1.82710 1.05379 1.20780 0.94803 0.98033 0.84684 1.19231 0.91223 1.39794 0.86709 0.91414 1.24841 0.98198 1.00173 0.96900 1.70113 1.15119 1.45749 1.24428 0.86337 0.81455 0.77377 0.82067 1.21738 1.22055 1.20609 1.21166 0.93393 0.96436 0.97451 1.21148 0.93764 0.98593 0.98384 0.75882 0.85098 0.84402 0.91483 0.89313 0.91714 0.91458 0.92242 0.92322 0.92600 0.88026 0.92270 0.92381 0.95711 0.93673 0.98537 0.93985 0.84333 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 19.25 29.55 0.57 -0.71 16 2 C -0.15 -1.41 13.23 -38.83 -0.51 -1.93 16 3 C 0.02 0.21 5.73 -106.87 -0.61 -0.41 16 4 C -0.10 -0.96 9.73 -39.26 -0.38 -1.34 16 5 C -0.09 -0.94 7.33 -39.25 -0.29 -1.23 16 6 C -0.11 -1.40 5.22 -104.91 -0.55 -1.95 16 7 C 0.55 8.90 7.26 -12.40 -0.09 8.81 16 8 O -0.52 -10.30 12.28 5.30 0.07 -10.23 16 9 N -0.60 -9.26 2.97 -166.12 -0.49 -9.75 16 10 C 0.09 1.09 4.84 -3.48 -0.02 1.07 16 11 C -0.13 -1.57 6.10 -26.38 -0.16 -1.73 16 12 C -0.12 -1.77 5.88 -26.69 -0.16 -1.92 16 13 C -0.12 -2.20 4.72 -26.61 -0.13 -2.32 16 14 C 0.12 2.35 3.18 -67.60 -0.21 2.13 16 15 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 16 C 0.17 3.73 3.61 -4.04 -0.01 3.71 16 17 N -0.60 -15.55 2.65 -181.12 -0.48 -16.03 16 18 C 0.16 4.13 9.03 59.85 0.54 4.67 16 19 C -0.24 -6.62 8.19 -15.06 -0.12 -6.75 16 20 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 21 C 0.00 -0.10 5.00 -17.43 -0.09 -0.19 16 22 N -0.91 -26.34 10.67 55.49 0.59 -25.74 16 23 Si 0.90 22.22 29.59 -169.99 -5.03 17.19 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 27 C -0.07 -0.77 9.60 -39.25 -0.38 -1.15 16 28 C -0.10 -1.02 9.73 -39.27 -0.38 -1.40 16 29 H 0.22 0.74 7.80 -54.09 -0.42 0.32 16 30 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 31 H 0.14 1.22 6.30 -52.48 -0.33 0.89 16 32 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.09 0.88 4.59 -51.93 -0.24 0.64 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.10 2.34 7.02 -51.93 -0.36 1.98 16 40 H 0.06 1.43 6.86 -51.93 -0.36 1.07 16 41 H 0.06 1.36 6.23 -51.93 -0.32 1.03 16 42 H 0.02 0.66 7.50 -51.93 -0.39 0.27 16 43 H 0.04 1.24 7.05 -51.93 -0.37 0.87 16 44 H 0.00 -0.09 7.90 -51.93 -0.41 -0.50 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.14 1.61 8.03 -52.48 -0.42 1.19 16 47 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -31.73 375.58 -9.64 -41.37 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.97 Total: 0.15 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.98 Total: -2.62 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.38 Total: -51.52 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.73 -9.64 -41.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691790364.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.761 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds