Wall clock time and date at job start Tue Mar 31 2020 14:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39715 * 119.99658 * 130.88031 * 3 2 1 5 5 C 1.37596 * 120.00283 * 179.71926 * 4 3 2 6 6 C 1.39750 * 119.99725 * 0.53021 * 5 4 3 7 7 C 1.47688 * 120.00581 * 179.72124 * 6 5 4 8 8 O 1.21572 * 120.00137 * 217.86540 * 7 6 5 9 9 N 1.34774 * 119.99713 * 37.86350 * 7 6 5 10 10 C 1.46931 * 120.63430 * 5.64066 * 9 7 6 11 11 C 1.53623 * 108.54273 * 126.36488 * 10 9 7 12 12 C 1.53045 * 109.24127 * 54.85891 * 11 10 9 13 13 C 1.53039 * 109.53527 * 298.50887 * 12 11 10 14 14 C 1.46925 * 120.62855 * 185.91711 * 9 7 6 15 15 H 1.09002 * 109.58646 * 113.80349 * 14 9 7 16 16 C 1.52994 * 109.58750 * 353.51758 * 14 9 7 17 17 N 1.46500 * 109.47098 * 179.35665 * 16 14 9 18 18 C 1.46502 * 120.00042 * 275.72053 * 17 16 14 19 19 C 1.36934 * 120.00338 * 95.72302 * 17 16 14 20 20 H 1.08009 * 119.99546 * 16.81359 * 19 17 16 21 21 C 1.38810 * 120.00407 * 196.81697 * 19 17 16 22 22 N 1.31614 * 120.00068 * 18.36547 * 21 19 17 23 23 Si 1.86800 * 119.99878 * 198.36775 * 21 19 17 24 24 H 1.48497 * 109.47080 * 94.99158 * 23 21 19 25 25 H 1.48499 * 109.47001 * 214.98863 * 23 21 19 26 26 H 1.48495 * 109.47307 * 334.98589 * 23 21 19 27 27 C 1.39745 * 119.98772 * 359.74448 * 6 5 4 28 28 C 1.37595 * 119.99935 * 359.97438 * 27 6 5 29 29 H 4.51949 * 14.06421 * 0.02562 * 4 2 1 30 30 H 1.08008 * 119.99477 * 0.02562 * 4 3 2 31 31 H 1.08005 * 120.00207 * 180.26005 * 5 4 3 32 32 H 1.09003 * 109.58744 * 246.20074 * 10 9 7 33 33 H 1.08995 * 109.58426 * 6.62266 * 10 9 7 34 34 H 1.08999 * 109.63526 * 294.86696 * 11 10 9 35 35 H 1.09006 * 109.42811 * 174.72603 * 11 10 9 36 36 H 1.09000 * 109.45862 * 178.48812 * 12 11 10 37 37 H 1.09006 * 109.45882 * 58.52970 * 12 11 10 38 38 H 1.08996 * 109.49515 * 301.40920 * 13 12 11 39 39 H 1.09004 * 109.49006 * 181.31475 * 13 12 11 40 40 H 1.08997 * 109.47356 * 299.35456 * 16 14 9 41 41 H 1.09000 * 109.47189 * 59.35744 * 16 14 9 42 42 H 1.09000 * 109.47281 * 94.88951 * 18 17 16 43 43 H 1.09004 * 109.47025 * 214.89408 * 18 17 16 44 44 H 1.09000 * 109.47102 * 334.88731 * 18 17 16 45 45 H 0.96994 * 120.00174 * 180.02562 * 22 21 19 46 46 H 1.08003 * 119.99466 * 180.02562 * 27 6 5 47 47 H 1.08004 * 119.99833 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3042 0.7929 -0.9149 5 6 4.6801 0.7980 -0.9112 6 6 5.3793 0.0023 0.0004 7 6 6.8562 0.0030 0.0004 8 8 7.4646 -1.0302 0.2014 9 7 7.5295 1.1490 -0.2224 10 6 6.8136 2.4263 -0.3443 11 6 7.4259 3.4262 0.6484 12 6 8.9329 3.5246 0.4003 13 6 9.5802 2.1575 0.6332 14 6 8.9928 1.1440 -0.3540 15 1 9.2692 1.4223 -1.3710 16 6 9.5313 -0.2533 -0.0403 17 7 10.9889 -0.2593 -0.1872 18 6 11.5912 -0.4604 -1.5074 19 6 11.7884 -0.0770 0.9094 20 1 11.3799 -0.1992 1.9018 21 6 13.1237 0.2651 0.7458 22 7 13.5400 0.7628 -0.3993 23 14 14.3298 0.0188 2.1508 24 1 15.0127 -1.2904 1.9931 25 1 15.3386 1.1084 2.1339 26 1 13.5971 0.0426 3.4421 27 6 4.6808 -0.7944 0.9115 28 6 3.3049 -0.7949 0.9114 29 1 -1.0500 -0.0001 0.0008 30 1 2.7637 1.4051 -1.6217 31 1 5.2198 1.4137 -1.6156 32 1 6.9159 2.8070 -1.3606 33 1 5.7591 2.2778 -0.1119 34 1 7.2465 3.0862 1.6683 35 1 6.9689 4.4054 0.5051 36 1 9.3668 4.2532 1.0851 37 1 9.1119 3.8408 -0.6274 38 1 9.3805 1.8296 1.6533 39 1 10.6566 2.2338 0.4791 40 1 9.2681 -0.5229 0.9825 41 1 9.0936 -0.9747 -0.7303 42 1 11.8085 0.5076 -1.9590 43 1 12.5157 -1.0282 -1.4023 44 1 10.8975 -1.0104 -2.1433 45 1 14.4731 1.0015 -0.5137 46 1 5.2211 -1.4091 1.6164 47 1 2.7650 -1.4110 1.6153 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691790364.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:29 Heat of formation + Delta-G solvation = 75.778002 kcal Electronic energy + Delta-G solvation = -27972.887182 eV Core-core repulsion = 24316.057443 eV Total energy + Delta-G solvation = -3656.829739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.88177 -39.92655 -38.36567 -37.33915 -35.02032 -33.84335 -33.71715 -32.19761 -31.84989 -30.97936 -28.13319 -27.88863 -26.15492 -24.93345 -24.14539 -23.56716 -22.10904 -21.85890 -20.37992 -19.94679 -18.72972 -18.11325 -17.26861 -16.90061 -16.61047 -16.48527 -15.99501 -15.76218 -15.45061 -15.38886 -15.07961 -14.87655 -14.61565 -14.52693 -14.21977 -14.08988 -13.96016 -13.82902 -13.30098 -13.09236 -12.91273 -12.82285 -12.55906 -12.44947 -12.34511 -12.13536 -12.06972 -11.99402 -11.83346 -11.69087 -11.54045 -11.42103 -11.32725 -10.70995 -10.26643 -10.01492 -9.62806 -9.43337 -8.80876 -7.80390 -5.20901 -0.43167 0.32468 1.43887 1.46508 1.52289 1.54588 1.78984 1.91251 2.20596 2.53432 2.95387 3.27776 3.31837 3.50201 3.74999 3.86607 3.90171 3.94643 3.98522 4.05524 4.16635 4.27828 4.38292 4.46001 4.48662 4.56922 4.61863 4.70912 4.78523 4.83893 4.90986 4.97432 5.02323 5.05597 5.13106 5.18760 5.27550 5.29260 5.33528 5.36053 5.37685 5.40100 5.52906 5.60467 5.69607 5.74822 5.80013 6.31183 6.47961 6.58476 7.13434 7.19377 7.90551 8.34114 9.23235 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.022235 B = 0.002969 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.994310 B = 9427.023263 C = 9893.149045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.204 4.204 3 C 0.024 3.976 4 C -0.098 4.098 5 C -0.083 4.083 6 C -0.130 4.130 7 C 0.544 3.456 8 O -0.567 6.567 9 N -0.596 5.596 10 C 0.090 3.910 11 C -0.126 4.126 12 C -0.115 4.115 13 C -0.106 4.106 14 C 0.137 3.863 15 H 0.057 0.943 16 C 0.177 3.823 17 N -0.617 5.617 18 C 0.178 3.822 19 C -0.244 4.244 20 H 0.059 0.941 21 C -0.051 4.051 22 N -0.932 5.932 23 Si 0.958 3.042 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.274 1.274 27 C -0.075 4.075 28 C -0.103 4.103 29 H 0.261 0.739 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.056 0.944 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.037 0.963 39 H 0.054 0.946 40 H 0.036 0.964 41 H 0.049 0.951 42 H 0.009 0.991 43 H 0.020 0.980 44 H 0.018 0.982 45 H 0.247 0.753 46 H 0.127 0.873 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.301 6.139 -1.374 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.204 4.204 3 C 0.023 3.977 4 C -0.116 4.116 5 C -0.101 4.101 6 C -0.133 4.133 7 C 0.334 3.666 8 O -0.447 6.447 9 N -0.328 5.328 10 C -0.031 4.031 11 C -0.164 4.164 12 C -0.153 4.153 13 C -0.145 4.145 14 C 0.032 3.968 15 H 0.075 0.925 16 C 0.051 3.949 17 N -0.341 5.341 18 C 0.033 3.967 19 C -0.374 4.374 20 H 0.077 0.923 21 C -0.246 4.246 22 N -0.580 5.580 23 Si 0.787 3.213 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.199 1.199 27 C -0.094 4.094 28 C -0.121 4.121 29 H 0.277 0.723 30 H 0.176 0.824 31 H 0.173 0.827 32 H 0.109 0.891 33 H 0.132 0.868 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.027 0.973 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.057 0.943 46 H 0.145 0.855 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -26.807 5.651 -1.312 27.428 hybrid contribution 1.456 -0.348 0.756 1.677 sum -25.351 5.303 -0.556 25.906 Atomic orbital electron populations 1.25830 0.96517 0.96388 0.96483 1.20259 0.92446 1.03847 1.03824 1.16362 0.87513 0.97330 0.96445 1.21386 0.93222 0.98677 0.98292 1.21536 0.94350 0.96736 0.97499 1.20014 0.91563 1.01218 1.00551 1.18887 0.88012 0.83302 0.76394 1.90858 1.69222 1.34103 1.50528 1.48323 1.06863 1.07849 1.69752 1.22587 0.97577 0.82047 1.00927 1.21980 0.94807 1.00444 0.99145 1.21530 0.96170 0.95613 1.01994 1.21620 1.00104 0.95277 0.97500 1.21955 0.77744 0.98892 0.98220 0.92481 1.21322 0.81311 0.92921 0.99326 1.44522 1.01398 1.83133 1.05083 1.20521 0.94243 0.96990 0.84905 1.19310 0.91839 1.39404 0.86892 0.92345 1.25499 0.99464 1.00334 0.99255 1.70244 1.15044 1.46675 1.26013 0.85378 0.79242 0.76919 0.79740 1.21791 1.21835 1.19858 1.21144 0.94217 0.96515 0.97507 1.21275 0.92933 0.98961 0.98953 0.72331 0.82392 0.82664 0.89115 0.86849 0.92527 0.87529 0.91606 0.91607 0.94435 0.92715 0.94546 0.93281 0.97285 0.96143 0.96303 0.94335 0.85506 0.83571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 19.25 74.32 1.43 0.02 16 2 C -0.20 -3.23 13.23 30.02 0.40 -2.83 16 3 C 0.02 0.42 5.73 -21.32 -0.12 0.30 16 4 C -0.10 -1.51 9.73 22.47 0.22 -1.29 16 5 C -0.08 -1.49 7.33 22.48 0.16 -1.32 16 6 C -0.13 -3.25 5.22 -20.05 -0.10 -3.35 16 7 C 0.54 18.05 7.26 86.74 0.63 18.68 16 8 O -0.57 -23.94 12.28 -3.94 -0.05 -23.99 16 9 N -0.60 -18.35 2.97 -797.76 -2.37 -20.72 16 10 C 0.09 1.83 4.84 86.51 0.42 2.25 16 11 C -0.13 -2.62 6.10 30.82 0.19 -2.43 16 12 C -0.12 -3.24 5.88 30.62 0.18 -3.06 16 13 C -0.11 -4.17 4.72 30.67 0.14 -4.03 16 14 C 0.14 5.38 3.18 44.97 0.14 5.52 16 15 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 16 C 0.18 8.44 3.61 86.38 0.31 8.75 16 17 N -0.62 -33.46 2.65 -726.93 -1.93 -35.38 16 18 C 0.18 9.48 9.03 127.77 1.15 10.63 16 19 C -0.24 -14.11 8.19 84.03 0.69 -13.42 16 20 H 0.06 3.42 7.83 -2.91 -0.02 3.39 16 21 C -0.05 -2.93 5.00 84.86 0.42 -2.50 16 22 N -0.93 -55.91 10.67 21.65 0.23 -55.68 16 23 Si 0.96 46.95 29.59 68.60 2.03 48.98 16 24 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 27 C -0.07 -1.76 9.60 22.48 0.22 -1.55 16 28 C -0.10 -1.97 9.73 22.47 0.22 -1.75 16 29 H 0.26 0.33 7.80 -4.42 -0.03 0.29 16 30 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 31 H 0.16 2.19 6.30 -2.91 -0.02 2.17 16 32 H 0.09 1.50 8.08 -2.39 -0.02 1.48 16 33 H 0.11 1.83 4.59 -2.39 -0.01 1.82 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.05 2.66 7.02 -2.39 -0.02 2.65 16 40 H 0.04 1.88 6.86 -2.39 -0.02 1.87 16 41 H 0.05 2.42 6.23 -2.39 -0.01 2.41 16 42 H 0.01 0.50 7.50 -2.39 -0.02 0.48 16 43 H 0.02 1.15 7.05 -2.38 -0.02 1.13 16 44 H 0.02 0.88 7.90 -2.39 -0.02 0.86 16 45 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 46 H 0.13 3.17 8.03 -2.91 -0.02 3.15 16 47 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -73.75 375.58 5.58 -68.18 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.96 Total: 9.99 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 6.70 Total: 8.63 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -4.06 Total: -111.78 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -23.99 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -73.75 5.58 -68.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691790364.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.954 kcal (2) G-P(sol) polarization free energy of solvation -73.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds