Wall clock time and date at job start Tue Mar 31 2020 15:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32564 * 1 3 3 C 1.50701 * 119.99419 * 2 1 4 4 N 1.46497 * 109.47150 * 93.82520 * 3 2 1 5 5 C 1.36734 * 127.14028 * 275.85233 * 4 3 2 6 6 C 1.50706 * 126.34401 * 359.94396 * 5 4 3 7 7 N 1.30288 * 107.30959 * 179.97438 * 5 4 3 8 8 N 1.28527 * 110.05323 * 0.02562 * 7 5 4 9 9 C 1.31214 * 109.85980 * 359.74115 * 8 7 5 10 10 N 1.38584 * 126.47469 * 180.25978 * 9 8 7 11 11 C 1.46890 * 111.00252 * 250.69074 * 10 9 8 12 12 C 1.46906 * 110.99678 * 14.64691 * 10 9 8 13 13 H 1.08996 * 109.46761 * 299.99925 * 12 10 9 14 14 C 1.52998 * 109.47079 * 59.99809 * 12 10 9 15 15 C 1.50701 * 109.46871 * 179.97438 * 12 10 9 16 16 H 1.08002 * 119.99903 * 0.02562 * 15 12 10 17 17 C 1.37873 * 119.99729 * 179.97438 * 15 12 10 18 18 N 1.31519 * 119.99606 * 179.97438 * 17 15 12 19 19 Si 1.86794 * 120.00324 * 0.02562 * 17 15 12 20 20 H 1.48506 * 109.47253 * 89.99911 * 19 17 15 21 21 H 1.48505 * 109.47336 * 210.00061 * 19 17 15 22 22 H 1.48506 * 109.47297 * 330.00186 * 19 17 15 23 23 C 1.47814 * 120.00245 * 179.97438 * 2 1 3 24 24 C 1.39526 * 120.14060 * 244.72917 * 23 2 1 25 25 C 1.37973 * 119.85242 * 179.76542 * 24 23 2 26 26 C 1.38341 * 120.14403 * 0.48786 * 25 24 23 27 27 C 1.38342 * 120.28569 * 359.76270 * 26 25 24 28 28 C 1.37973 * 120.14193 * 0.02562 * 27 26 25 29 29 H 1.08005 * 120.00021 * 175.03912 * 1 2 3 30 30 H 1.07999 * 120.00752 * 354.76885 * 1 2 3 31 31 H 1.09004 * 109.46631 * 213.82491 * 3 2 1 32 32 H 1.08998 * 109.47405 * 333.81965 * 3 2 1 33 33 H 1.08998 * 109.47092 * 89.99825 * 6 5 4 34 34 H 1.09004 * 109.47128 * 210.00115 * 6 5 4 35 35 H 1.09002 * 109.46988 * 329.99573 * 6 5 4 36 36 H 1.08997 * 109.47291 * 63.15200 * 11 10 9 37 37 H 1.09000 * 109.47664 * 183.15563 * 11 10 9 38 38 H 1.09003 * 109.47174 * 303.15589 * 11 10 9 39 39 H 1.08996 * 109.47230 * 60.00402 * 14 12 10 40 40 H 1.09008 * 109.46750 * 179.97438 * 14 12 10 41 41 H 1.08994 * 109.47227 * 299.99655 * 14 12 10 42 42 H 0.97006 * 119.99711 * 179.97438 * 18 17 15 43 43 H 1.08004 * 120.07625 * 359.97438 * 24 23 2 44 44 H 1.08007 * 119.93057 * 180.22874 * 25 24 23 45 45 H 1.08003 * 119.85876 * 179.73991 * 26 25 24 46 46 H 1.07996 * 119.93093 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.07609 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0790 1.3052 0.0000 4 7 2.4029 1.6821 1.3781 5 6 1.5982 2.3433 2.2640 6 6 0.1953 2.8291 2.0055 7 7 2.2694 2.4761 3.3728 8 7 3.4347 1.9483 3.2486 9 6 3.5685 1.4414 2.0457 10 7 4.6839 0.7877 1.5466 11 6 5.3674 1.6080 0.5378 12 6 5.6022 0.4117 2.6298 13 1 5.9291 1.3082 3.1565 14 6 4.8835 -0.5206 3.6071 15 6 6.7999 -0.2958 2.0500 16 1 6.8718 -0.4502 0.9835 17 6 7.8042 -0.7449 2.8809 18 7 8.8492 -1.3628 2.3749 19 14 7.6801 -0.4772 4.7254 20 1 6.9875 -1.6339 5.3480 21 1 9.0435 -0.3489 5.2999 22 1 6.9106 0.7640 4.9948 23 6 2.0648 -1.2801 0.0006 24 6 2.8612 -1.6287 1.0919 25 6 3.5447 -2.8273 1.0882 26 6 3.4496 -3.6779 0.0014 27 6 2.6658 -3.3357 -1.0860 28 6 1.9738 -2.1421 -1.0929 29 1 -0.5400 -0.9318 -0.0809 30 1 -0.5401 0.9313 0.0853 31 1 3.0001 1.1930 -0.5721 32 1 1.4620 2.0809 -0.4534 33 1 -0.5153 2.0479 2.2755 34 1 0.0025 3.7187 2.6052 35 1 0.0839 3.0723 0.9488 36 1 5.7349 2.5231 1.0020 37 1 6.2060 1.0492 0.1224 38 1 4.6684 1.8605 -0.2596 39 1 4.5567 -1.4171 3.0804 40 1 5.5652 -0.7999 4.4106 41 1 4.0171 -0.0093 4.0265 42 1 9.5560 -1.6785 2.9595 43 1 2.9398 -0.9635 1.9391 44 1 4.1586 -3.1001 1.9339 45 1 3.9900 -4.6130 0.0016 46 1 2.5961 -4.0038 -1.9316 47 1 1.3625 -1.8758 -1.9426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001749242425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:40 Heat of formation + Delta-G solvation = 154.780053 kcal Electronic energy + Delta-G solvation = -29381.626172 eV Core-core repulsion = 25760.514970 eV Total energy + Delta-G solvation = -3621.111202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.65072 -39.03764 -37.37101 -36.23515 -33.27009 -32.85344 -31.48774 -30.74347 -30.05438 -29.55188 -27.78741 -26.65895 -25.20573 -24.48372 -22.89964 -22.18993 -21.95997 -20.76026 -19.48809 -19.10822 -17.05311 -16.82113 -16.48694 -16.06548 -15.36325 -15.11059 -15.03900 -14.64475 -14.27857 -14.07319 -13.89528 -13.63105 -13.28279 -13.17746 -12.98431 -12.79363 -12.68763 -12.32033 -12.25155 -12.20820 -11.94942 -11.74199 -11.18628 -11.02932 -10.89996 -10.86368 -10.68913 -10.63700 -10.21972 -10.03968 -9.97414 -9.59895 -9.43150 -9.38349 -8.77035 -8.60345 -8.59251 -8.37334 -7.57628 -6.12657 -4.13265 1.31988 1.73357 1.86490 2.13532 2.77310 3.25865 3.29330 3.40885 3.47918 4.03947 4.36856 4.39127 4.39414 4.56895 4.67024 4.85483 5.00398 5.13197 5.18025 5.22310 5.24692 5.38686 5.42307 5.50485 5.52405 5.66416 5.73010 5.82618 5.89539 5.98246 6.04893 6.08268 6.17959 6.31770 6.33607 6.41830 6.45505 6.48460 6.54455 6.65230 6.70880 6.82617 6.90027 6.93930 6.99889 7.19756 7.27971 7.45596 7.64053 7.91881 8.51151 8.88783 9.21634 9.48391 10.98841 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010798 B = 0.006191 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.432909 B = 4521.644187 C = 6262.102628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.096 4.096 3 C 0.149 3.851 4 N -0.478 5.478 5 C 0.153 3.847 6 C -0.057 4.057 7 N -0.289 5.289 8 N -0.324 5.324 9 C 0.379 3.621 10 N -0.443 5.443 11 C 0.039 3.961 12 C 0.202 3.798 13 H 0.022 0.978 14 C -0.154 4.154 15 C -0.512 4.512 16 H 0.085 0.915 17 C 0.079 3.921 18 N -0.894 5.894 19 Si 0.877 3.123 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.261 1.261 23 C -0.068 4.068 24 C -0.070 4.070 25 C -0.103 4.103 26 C -0.114 4.114 27 C -0.130 4.130 28 C -0.112 4.112 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.032 0.968 37 H 0.102 0.898 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.265 0.735 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.118 0.882 46 H 0.117 0.883 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.891 2.181 -8.694 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 C 0.026 3.974 4 N -0.174 5.174 5 C -0.114 4.114 6 C -0.117 4.117 7 N -0.128 5.128 8 N -0.168 5.168 9 C 0.024 3.976 10 N -0.167 5.167 11 C -0.108 4.108 12 C 0.096 3.904 13 H 0.039 0.961 14 C -0.212 4.212 15 C -0.550 4.550 16 H 0.103 0.897 17 C -0.124 4.124 18 N -0.532 5.532 19 Si 0.707 3.293 20 H -0.205 1.205 21 H -0.224 1.224 22 H -0.186 1.186 23 C -0.068 4.068 24 C -0.088 4.088 25 C -0.121 4.121 26 C -0.132 4.132 27 C -0.148 4.148 28 C -0.130 4.130 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.121 0.879 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.477 2.066 -7.475 19.120 hybrid contribution 0.146 0.145 -0.017 0.207 sum -17.331 2.211 -7.492 19.010 Atomic orbital electron populations 1.24279 0.94405 1.02506 0.98157 1.20592 0.94392 0.92973 1.01723 1.20871 1.01958 0.94117 0.80414 1.46279 1.12428 1.45664 1.13032 1.24549 0.97230 1.01978 0.87684 1.20112 0.87103 1.02075 1.02371 1.73941 1.00631 1.18490 1.19786 1.74761 1.11443 1.15006 1.15565 1.23123 0.89014 0.96224 0.89285 1.58967 1.05593 1.35646 1.16493 1.22388 0.99101 0.96082 0.93230 1.19706 0.89244 0.95042 0.86415 0.96072 1.22324 0.99676 1.00294 0.98893 1.20842 1.00772 1.37349 0.96072 0.89715 1.24791 0.94956 0.94320 0.98325 1.69865 1.09262 1.38492 1.35556 0.86993 0.76230 0.79747 0.86289 1.20468 1.22424 1.18555 1.18724 0.99232 0.93508 0.95365 1.21360 0.93635 0.95919 0.97838 1.21167 0.98033 0.94100 0.98795 1.21208 0.98386 0.99746 0.93817 1.20940 0.98443 0.96971 0.98459 1.21060 1.00271 0.94408 0.97240 0.87524 0.87659 0.87432 0.88582 0.90181 0.89199 0.91089 0.94974 0.87923 0.93440 0.92507 0.93621 0.93559 0.92485 0.85609 0.85650 0.86390 0.86537 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 13.93 28.82 0.40 -1.01 16 2 C -0.10 -1.12 5.03 -102.61 -0.52 -1.63 16 3 C 0.15 1.75 5.98 -5.19 -0.03 1.72 16 4 N -0.48 -7.31 2.79 -115.37 -0.32 -7.63 16 5 C 0.15 2.31 8.07 -154.02 -1.24 1.07 16 6 C -0.06 -0.54 9.81 36.01 0.35 -0.18 16 7 N -0.29 -5.60 12.18 32.99 0.40 -5.19 16 8 N -0.32 -7.01 9.67 30.32 0.29 -6.72 16 9 C 0.38 7.31 4.68 -318.87 -1.49 5.82 16 10 N -0.44 -8.94 3.51 -176.09 -0.62 -9.55 16 11 C 0.04 0.71 9.02 60.06 0.54 1.25 16 12 C 0.20 4.79 1.31 -68.86 -0.09 4.70 16 13 H 0.02 0.56 7.02 -51.93 -0.36 0.20 16 14 C -0.15 -3.58 7.70 37.16 0.29 -3.30 16 15 C -0.51 -13.62 8.50 -34.44 -0.29 -13.91 16 16 H 0.08 2.39 6.64 -52.49 -0.35 2.05 16 17 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 18 N -0.89 -26.34 13.96 55.43 0.77 -25.56 16 19 Si 0.88 22.12 24.37 -169.99 -4.14 17.97 16 20 H -0.28 -6.86 6.87 56.52 0.39 -6.47 16 21 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 22 H -0.26 -6.60 6.53 56.52 0.37 -6.23 16 23 C -0.07 -0.96 5.32 -105.02 -0.56 -1.52 16 24 C -0.07 -1.17 8.58 -39.20 -0.34 -1.51 16 25 C -0.10 -1.73 9.60 -39.64 -0.38 -2.11 16 26 C -0.11 -1.65 10.04 -39.51 -0.40 -2.05 16 27 C -0.13 -1.67 10.03 -39.64 -0.40 -2.07 16 28 C -0.11 -1.41 9.71 -39.19 -0.38 -1.79 16 29 H 0.11 0.92 8.05 -52.48 -0.42 0.50 16 30 H 0.11 0.71 7.57 -52.49 -0.40 0.32 16 31 H 0.11 1.34 5.92 -51.93 -0.31 1.04 16 32 H 0.10 0.80 7.34 -51.93 -0.38 0.42 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.48 7.37 -51.93 -0.38 0.10 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.10 2.00 6.21 -51.93 -0.32 1.68 16 38 H 0.05 0.71 6.00 -51.93 -0.31 0.40 16 39 H 0.06 1.25 5.32 -51.93 -0.28 0.98 16 40 H 0.05 1.10 3.27 -51.92 -0.17 0.93 16 41 H 0.05 1.06 5.99 -51.93 -0.31 0.75 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.13 2.40 4.29 -52.48 -0.23 2.17 16 44 H 0.13 2.20 7.12 -52.48 -0.37 1.83 16 45 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 46 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 47 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -32.51 364.75 -9.06 -41.57 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.31 Total: 4.02 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -4.63 Total: -14.41 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.53 Total: -54.66 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.51 -9.06 -41.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001749242425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.354 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds