Wall clock time and date at job start Tue Mar 31 2020 15:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32564 * 1 3 3 C 1.50701 * 119.99419 * 2 1 4 4 N 1.46497 * 109.47150 * 93.82520 * 3 2 1 5 5 C 1.36734 * 127.14028 * 275.85233 * 4 3 2 6 6 C 1.50706 * 126.34401 * 359.94396 * 5 4 3 7 7 N 1.30288 * 107.30959 * 179.97438 * 5 4 3 8 8 N 1.28527 * 110.05323 * 0.02562 * 7 5 4 9 9 C 1.31214 * 109.85980 * 359.74115 * 8 7 5 10 10 N 1.38584 * 126.47469 * 180.25978 * 9 8 7 11 11 C 1.46890 * 111.00252 * 250.69074 * 10 9 8 12 12 C 1.46906 * 110.99678 * 14.64691 * 10 9 8 13 13 H 1.08996 * 109.46761 * 299.99925 * 12 10 9 14 14 C 1.52998 * 109.47079 * 59.99809 * 12 10 9 15 15 C 1.50701 * 109.46871 * 179.97438 * 12 10 9 16 16 H 1.08002 * 119.99903 * 0.02562 * 15 12 10 17 17 C 1.37873 * 119.99729 * 179.97438 * 15 12 10 18 18 N 1.31519 * 119.99606 * 179.97438 * 17 15 12 19 19 Si 1.86794 * 120.00324 * 0.02562 * 17 15 12 20 20 H 1.48506 * 109.47253 * 89.99911 * 19 17 15 21 21 H 1.48505 * 109.47336 * 210.00061 * 19 17 15 22 22 H 1.48506 * 109.47297 * 330.00186 * 19 17 15 23 23 C 1.47814 * 120.00245 * 179.97438 * 2 1 3 24 24 C 1.39526 * 120.14060 * 244.72917 * 23 2 1 25 25 C 1.37973 * 119.85242 * 179.76542 * 24 23 2 26 26 C 1.38341 * 120.14403 * 0.48786 * 25 24 23 27 27 C 1.38342 * 120.28569 * 359.76270 * 26 25 24 28 28 C 1.37973 * 120.14193 * 0.02562 * 27 26 25 29 29 H 1.08005 * 120.00021 * 175.03912 * 1 2 3 30 30 H 1.07999 * 120.00752 * 354.76885 * 1 2 3 31 31 H 1.09004 * 109.46631 * 213.82491 * 3 2 1 32 32 H 1.08998 * 109.47405 * 333.81965 * 3 2 1 33 33 H 1.08998 * 109.47092 * 89.99825 * 6 5 4 34 34 H 1.09004 * 109.47128 * 210.00115 * 6 5 4 35 35 H 1.09002 * 109.46988 * 329.99573 * 6 5 4 36 36 H 1.08997 * 109.47291 * 63.15200 * 11 10 9 37 37 H 1.09000 * 109.47664 * 183.15563 * 11 10 9 38 38 H 1.09003 * 109.47174 * 303.15589 * 11 10 9 39 39 H 1.08996 * 109.47230 * 60.00402 * 14 12 10 40 40 H 1.09008 * 109.46750 * 179.97438 * 14 12 10 41 41 H 1.08994 * 109.47227 * 299.99655 * 14 12 10 42 42 H 0.97006 * 119.99711 * 179.97438 * 18 17 15 43 43 H 1.08004 * 120.07625 * 359.97438 * 24 23 2 44 44 H 1.08007 * 119.93057 * 180.22874 * 25 24 23 45 45 H 1.08003 * 119.85876 * 179.73991 * 26 25 24 46 46 H 1.07996 * 119.93093 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.07609 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0790 1.3052 0.0000 4 7 2.4029 1.6821 1.3781 5 6 1.5982 2.3433 2.2640 6 6 0.1953 2.8291 2.0055 7 7 2.2694 2.4761 3.3728 8 7 3.4347 1.9483 3.2486 9 6 3.5685 1.4414 2.0457 10 7 4.6839 0.7877 1.5466 11 6 5.3674 1.6080 0.5378 12 6 5.6022 0.4117 2.6298 13 1 5.9291 1.3082 3.1565 14 6 4.8835 -0.5206 3.6071 15 6 6.7999 -0.2958 2.0500 16 1 6.8718 -0.4502 0.9835 17 6 7.8042 -0.7449 2.8809 18 7 8.8492 -1.3628 2.3749 19 14 7.6801 -0.4772 4.7254 20 1 6.9875 -1.6339 5.3480 21 1 9.0435 -0.3489 5.2999 22 1 6.9106 0.7640 4.9948 23 6 2.0648 -1.2801 0.0006 24 6 2.8612 -1.6287 1.0919 25 6 3.5447 -2.8273 1.0882 26 6 3.4496 -3.6779 0.0014 27 6 2.6658 -3.3357 -1.0860 28 6 1.9738 -2.1421 -1.0929 29 1 -0.5400 -0.9318 -0.0809 30 1 -0.5401 0.9313 0.0853 31 1 3.0001 1.1930 -0.5721 32 1 1.4620 2.0809 -0.4534 33 1 -0.5153 2.0479 2.2755 34 1 0.0025 3.7187 2.6052 35 1 0.0839 3.0723 0.9488 36 1 5.7349 2.5231 1.0020 37 1 6.2060 1.0492 0.1224 38 1 4.6684 1.8605 -0.2596 39 1 4.5567 -1.4171 3.0804 40 1 5.5652 -0.7999 4.4106 41 1 4.0171 -0.0093 4.0265 42 1 9.5560 -1.6785 2.9595 43 1 2.9398 -0.9635 1.9391 44 1 4.1586 -3.1001 1.9339 45 1 3.9900 -4.6130 0.0016 46 1 2.5961 -4.0038 -1.9316 47 1 1.3625 -1.8758 -1.9426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001749242425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:39 Heat of formation + Delta-G solvation = 136.411093 kcal Electronic energy + Delta-G solvation = -29382.422710 eV Core-core repulsion = 25760.514970 eV Total energy + Delta-G solvation = -3621.907740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.95709 -40.08595 -39.03484 -37.26359 -34.94260 -34.27064 -32.80442 -32.09969 -31.54431 -30.57663 -29.05511 -27.62591 -27.03196 -26.11927 -23.93936 -23.65587 -23.22454 -21.93308 -21.10144 -20.13215 -18.90794 -18.05976 -17.66436 -17.41195 -16.89922 -16.71511 -16.21604 -15.84219 -15.58708 -15.45418 -15.07790 -14.93439 -14.66542 -14.48353 -14.22360 -14.18467 -13.84794 -13.59325 -13.44417 -13.34932 -13.17395 -12.99824 -12.80711 -12.74577 -12.45623 -12.36719 -12.14724 -11.97566 -11.86816 -11.56123 -11.50819 -11.19858 -11.05914 -10.79041 -10.45424 -10.37222 -9.72220 -9.40366 -9.10190 -8.34099 -6.35905 0.32961 0.62394 0.85046 0.96710 1.23162 1.30828 1.41482 1.65818 1.90470 2.25930 2.88310 2.96632 3.03532 3.52765 3.59207 3.84601 3.93622 3.99866 4.14284 4.16151 4.20400 4.31699 4.36047 4.41073 4.46970 4.56154 4.57396 4.64179 4.72514 4.75694 4.77885 4.82263 4.93123 4.99085 5.01949 5.05346 5.12447 5.14597 5.22899 5.27828 5.43108 5.46031 5.58951 5.67530 5.73218 5.77583 5.81587 5.86907 6.19088 6.19947 6.57040 6.67656 7.27662 7.87511 8.80609 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010798 B = 0.006191 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.432909 B = 4521.644187 C = 6262.102628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.131 4.131 3 C 0.144 3.856 4 N -0.468 5.468 5 C 0.179 3.821 6 C -0.059 4.059 7 N -0.338 5.338 8 N -0.371 5.371 9 C 0.364 3.636 10 N -0.439 5.439 11 C 0.041 3.959 12 C 0.215 3.785 13 H -0.006 1.006 14 C -0.142 4.142 15 C -0.500 4.500 16 H 0.062 0.938 17 C 0.035 3.965 18 N -0.932 5.932 19 Si 0.925 3.075 20 H -0.270 1.270 21 H -0.292 1.292 22 H -0.266 1.266 23 C -0.066 4.066 24 C -0.093 4.093 25 C -0.133 4.133 26 C -0.128 4.128 27 C -0.126 4.126 28 C -0.107 4.107 29 H 0.113 0.887 30 H 0.140 0.860 31 H 0.095 0.905 32 H 0.143 0.857 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.021 0.979 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.033 0.967 41 H 0.046 0.954 42 H 0.267 0.733 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.127 0.873 46 H 0.148 0.852 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.188 3.180 -11.066 24.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.132 4.132 3 C 0.024 3.976 4 N -0.164 5.164 5 C -0.089 4.089 6 C -0.118 4.118 7 N -0.177 5.177 8 N -0.215 5.215 9 C 0.007 3.993 10 N -0.162 5.162 11 C -0.106 4.106 12 C 0.108 3.892 13 H 0.012 0.988 14 C -0.199 4.199 15 C -0.538 4.538 16 H 0.080 0.920 17 C -0.164 4.164 18 N -0.571 5.571 19 Si 0.754 3.246 20 H -0.196 1.196 21 H -0.219 1.219 22 H -0.191 1.191 23 C -0.066 4.066 24 C -0.111 4.111 25 C -0.151 4.151 26 C -0.146 4.146 27 C -0.144 4.144 28 C -0.124 4.124 29 H 0.132 0.868 30 H 0.158 0.842 31 H 0.114 0.886 32 H 0.161 0.839 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.128 0.872 36 H 0.040 0.960 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.145 0.855 46 H 0.166 0.834 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -21.802 3.070 -9.861 24.124 hybrid contribution 1.273 -0.133 0.588 1.409 sum -20.529 2.937 -9.273 22.717 Atomic orbital electron populations 1.24643 0.93202 1.04480 0.93054 1.20450 0.95194 0.91524 1.06000 1.21229 1.02452 0.95792 0.78166 1.46500 1.10805 1.44716 1.14329 1.25685 0.98417 0.98732 0.86096 1.20492 0.83258 1.02869 1.05188 1.73846 1.00700 1.20772 1.22429 1.74608 1.13260 1.16413 1.17220 1.22842 0.89736 0.97106 0.89646 1.58822 1.05395 1.36771 1.15256 1.22390 0.99500 0.94937 0.93727 1.19294 0.89179 0.93506 0.87258 0.98839 1.22164 0.99188 1.00256 0.98313 1.20969 1.01617 1.36239 0.95013 0.92024 1.25366 0.94915 0.94519 1.01588 1.69956 1.10180 1.40209 1.36802 0.86217 0.76205 0.79560 0.82652 1.19621 1.21889 1.19129 1.18995 0.98251 0.94957 0.94383 1.21218 0.95772 0.95602 0.98543 1.21110 0.99190 0.95544 0.99251 1.21373 0.99350 0.99914 0.93948 1.21330 0.97061 0.97622 0.98348 1.21473 0.99803 0.93667 0.97508 0.86836 0.84234 0.88640 0.83879 0.88150 0.88346 0.87167 0.96028 0.89873 0.89602 0.92158 0.94804 0.93477 0.92317 0.88354 0.88418 0.85532 0.83447 0.83209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 13.93 66.67 0.93 -0.46 16 2 C -0.13 -2.51 5.03 -18.48 -0.09 -2.60 16 3 C 0.14 2.80 5.98 85.63 0.51 3.32 16 4 N -0.47 -13.28 2.79 -518.91 -1.45 -14.73 16 5 C 0.18 4.92 8.07 137.64 1.11 6.03 16 6 C -0.06 -0.79 9.81 71.24 0.70 -0.09 16 7 N -0.34 -12.98 12.18 -49.54 -0.60 -13.59 16 8 N -0.37 -16.45 9.67 -58.00 -0.56 -17.01 16 9 C 0.36 14.14 4.68 260.11 1.22 15.36 16 10 N -0.44 -18.31 3.51 -711.01 -2.49 -20.80 16 11 C 0.04 1.55 9.02 127.69 1.15 2.70 16 12 C 0.21 10.74 1.31 44.17 0.06 10.79 16 13 H -0.01 -0.33 7.02 -2.39 -0.02 -0.35 16 14 C -0.14 -6.92 7.70 71.98 0.55 -6.36 16 15 C -0.50 -28.01 8.50 25.60 0.22 -27.79 16 16 H 0.06 3.69 6.64 -2.91 -0.02 3.67 16 17 C 0.04 2.06 5.45 84.65 0.46 2.52 16 18 N -0.93 -56.99 13.96 21.45 0.30 -56.69 16 19 Si 0.92 47.40 24.37 68.60 1.67 49.07 16 20 H -0.27 -13.37 6.87 99.48 0.68 -12.69 16 21 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 22 H -0.27 -13.80 6.53 99.48 0.65 -13.15 16 23 C -0.07 -1.72 5.32 -20.12 -0.11 -1.83 16 24 C -0.09 -3.20 8.58 22.52 0.19 -3.01 16 25 C -0.13 -4.73 9.60 22.23 0.21 -4.51 16 26 C -0.13 -3.75 10.04 22.32 0.22 -3.53 16 27 C -0.13 -2.95 10.03 22.23 0.22 -2.72 16 28 C -0.11 -2.34 9.71 22.52 0.22 -2.12 16 29 H 0.11 1.27 8.05 -2.91 -0.02 1.25 16 30 H 0.14 0.74 7.57 -2.91 -0.02 0.72 16 31 H 0.10 2.10 5.92 -2.38 -0.01 2.09 16 32 H 0.14 1.42 7.34 -2.39 -0.02 1.41 16 33 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.11 0.64 7.37 -2.39 -0.02 0.63 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 3.41 6.21 -2.39 -0.01 3.40 16 38 H 0.09 2.50 6.00 -2.39 -0.01 2.49 16 39 H 0.06 2.86 5.32 -2.39 -0.01 2.84 16 40 H 0.03 1.69 3.27 -2.38 -0.01 1.68 16 41 H 0.05 2.27 5.99 -2.39 -0.01 2.26 16 42 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 43 H 0.10 3.90 4.29 -2.91 -0.01 3.89 16 44 H 0.10 3.84 7.12 -2.91 -0.02 3.82 16 45 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 46 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 47 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -77.84 364.75 5.56 -72.28 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.91 Total: 15.78 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: 7.78 Total: -14.30 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -4.81 Total: -122.82 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.67 Total: 49.07 kcal Total: -77.84 5.56 -72.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001749242425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.688 kcal (2) G-P(sol) polarization free energy of solvation -77.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds