Wall clock time and date at job start Tue Mar 31 2020 15:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32568 * 1 3 3 C 1.50697 * 119.99983 * 2 1 4 4 N 1.46494 * 109.47078 * 95.00105 * 3 2 1 5 5 C 1.36738 * 127.13516 * 275.39486 * 4 3 2 6 6 C 1.50700 * 126.34827 * 359.96398 * 5 4 3 7 7 N 1.30306 * 107.30263 * 179.83829 * 5 4 3 8 8 N 1.28530 * 110.05170 * 0.43918 * 7 5 4 9 9 C 1.31208 * 109.85858 * 359.72242 * 8 7 5 10 10 N 1.38591 * 126.46940 * 179.97438 * 9 8 7 11 11 C 1.46892 * 111.00164 * 250.45890 * 10 9 8 12 12 C 1.46899 * 110.99875 * 14.41461 * 10 9 8 13 13 H 1.09006 * 109.47468 * 54.99605 * 12 10 9 14 14 C 1.52999 * 109.47221 * 294.99810 * 12 10 9 15 15 C 1.50700 * 109.47368 * 174.99921 * 12 10 9 16 16 H 1.08002 * 119.99721 * 359.97438 * 15 12 10 17 17 C 1.37873 * 120.00060 * 180.02562 * 15 12 10 18 18 N 1.31512 * 120.00379 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 119.99649 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47454 * 59.99861 * 19 17 15 21 21 H 1.48509 * 109.46787 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46858 * 299.99074 * 19 17 15 23 23 C 1.47811 * 119.99537 * 180.02562 * 2 1 3 24 24 C 1.39537 * 120.13870 * 244.72583 * 23 2 1 25 25 C 1.37977 * 119.85710 * 179.77028 * 24 23 2 26 26 C 1.38339 * 120.13850 * 0.48260 * 25 24 23 27 27 C 1.38347 * 120.28842 * 359.76825 * 26 25 24 28 28 C 1.37971 * 120.14220 * 0.02562 * 27 26 25 29 29 H 1.07999 * 119.99719 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00232 * 179.72319 * 1 2 3 31 31 H 1.09003 * 109.46724 * 214.99506 * 3 2 1 32 32 H 1.08997 * 109.47145 * 334.99396 * 3 2 1 33 33 H 1.09002 * 109.46913 * 90.00292 * 6 5 4 34 34 H 1.08997 * 109.47085 * 210.00282 * 6 5 4 35 35 H 1.09002 * 109.46933 * 330.00130 * 6 5 4 36 36 H 1.09004 * 109.47186 * 54.09694 * 11 10 9 37 37 H 1.09000 * 109.47375 * 174.08919 * 11 10 9 38 38 H 1.08998 * 109.47361 * 294.09474 * 11 10 9 39 39 H 1.09005 * 109.47264 * 60.00027 * 14 12 10 40 40 H 1.08996 * 109.47425 * 179.97438 * 14 12 10 41 41 H 1.08994 * 109.47073 * 300.00524 * 14 12 10 42 42 H 0.96999 * 120.00505 * 180.02562 * 18 17 15 43 43 H 1.08001 * 120.07498 * 359.97438 * 24 23 2 44 44 H 1.07997 * 119.92868 * 180.23193 * 25 24 23 45 45 H 1.08006 * 119.85666 * 179.74903 * 26 25 24 46 46 H 1.08000 * 119.92826 * 179.97438 * 27 26 25 47 47 H 1.07996 * 120.07171 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0792 1.3051 0.0000 4 7 2.4276 1.6678 1.3759 5 6 1.6419 2.3275 2.2799 6 6 0.2387 2.8257 2.0477 7 7 2.3304 2.4432 3.3801 8 7 3.4920 1.9137 3.2308 9 6 3.6056 1.4226 2.0194 10 7 4.7132 0.7772 1.4927 11 6 5.3747 1.6092 0.4789 12 6 5.6533 0.3937 2.5543 13 1 5.1332 -0.2062 3.3011 14 6 6.2179 1.6530 3.2149 15 6 6.7809 -0.4105 1.9605 16 1 6.7973 -0.6166 0.9004 17 6 7.7911 -0.8841 2.7705 18 7 7.7709 -0.6336 4.0614 19 14 9.1892 -1.8805 2.0341 20 1 9.8982 -1.0625 1.0176 21 1 10.1395 -2.2682 3.1075 22 1 8.6415 -3.1024 1.3922 23 6 2.0646 -1.2801 -0.0006 24 6 2.8611 -1.6298 1.0905 25 6 3.5446 -2.8284 1.0859 26 6 3.4494 -3.6781 -0.0017 27 6 2.6656 -3.3349 -1.0888 28 6 1.9737 -2.1412 -1.0948 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0045 31 1 2.9899 1.1987 -0.5894 32 1 1.4543 2.0854 -0.4344 33 1 -0.4733 2.0475 2.3227 34 1 0.0621 3.7116 2.6576 35 1 0.1124 3.0783 0.9949 36 1 5.6052 2.5859 0.9045 37 1 6.2975 1.1260 0.1579 38 1 4.7125 1.7334 -0.3779 39 1 5.4023 2.2348 3.6445 40 1 6.9151 1.3686 4.0029 41 1 6.7380 2.2529 2.4682 42 1 8.4818 -0.9665 4.6313 43 1 2.9398 -0.9653 1.9382 44 1 4.1584 -3.1019 1.9313 45 1 3.9896 -4.6133 -0.0022 46 1 2.5958 -4.0024 -1.9349 47 1 1.3625 -1.8743 -1.9442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001749242426.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:43 Heat of formation + Delta-G solvation = 149.223571 kcal Electronic energy + Delta-G solvation = -29177.842126 eV Core-core repulsion = 25556.489977 eV Total energy + Delta-G solvation = -3621.352149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.49709 -38.99336 -37.28957 -36.14737 -33.19619 -32.83677 -31.36139 -30.56447 -29.55637 -28.67326 -27.63309 -26.57018 -25.13646 -24.91013 -22.88366 -22.12607 -21.63394 -20.64299 -19.56654 -18.91719 -16.93655 -16.43307 -16.05287 -15.99607 -15.48779 -15.13072 -14.70944 -14.53802 -14.26117 -14.01946 -13.67906 -13.47948 -13.37372 -13.03741 -12.91108 -12.68000 -12.34510 -12.20633 -12.17260 -12.02279 -11.55726 -11.37116 -11.12974 -10.90441 -10.84960 -10.82565 -10.74544 -10.39578 -10.15178 -10.06050 -9.84293 -9.71241 -9.49451 -8.83239 -8.74783 -8.57335 -8.38847 -8.34802 -7.38311 -6.01735 -4.08562 1.34960 1.76057 1.92292 2.27109 2.89916 3.29766 3.35385 3.36896 3.42016 4.07048 4.35156 4.44642 4.64368 4.69762 4.72909 4.91837 5.08641 5.17218 5.23382 5.26838 5.29822 5.44539 5.47844 5.56831 5.66627 5.75136 5.76895 5.91772 5.96323 6.08311 6.09156 6.18443 6.31646 6.36397 6.40160 6.47951 6.55482 6.72883 6.83982 6.87787 6.97791 7.04777 7.18804 7.30830 7.35065 7.53625 7.69396 7.77356 7.98657 8.33193 8.50445 8.93217 9.38986 9.55777 11.04245 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010614 B = 0.005934 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.437696 B = 4717.241132 C = 6694.692723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.095 4.095 3 C 0.150 3.850 4 N -0.480 5.480 5 C 0.149 3.851 6 C -0.056 4.056 7 N -0.291 5.291 8 N -0.314 5.314 9 C 0.382 3.618 10 N -0.451 5.451 11 C 0.036 3.964 12 C 0.233 3.767 13 H 0.046 0.954 14 C -0.180 4.180 15 C -0.509 4.509 16 H 0.062 0.938 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.895 3.105 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.067 4.067 24 C -0.062 4.062 25 C -0.101 4.101 26 C -0.116 4.116 27 C -0.131 4.131 28 C -0.112 4.112 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.031 0.969 37 H 0.096 0.904 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.786 0.946 -11.691 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.096 4.096 3 C 0.028 3.972 4 N -0.177 5.177 5 C -0.118 4.118 6 C -0.115 4.115 7 N -0.131 5.131 8 N -0.157 5.157 9 C 0.027 3.973 10 N -0.175 5.175 11 C -0.111 4.111 12 C 0.129 3.871 13 H 0.064 0.936 14 C -0.239 4.239 15 C -0.548 4.548 16 H 0.080 0.920 17 C -0.137 4.137 18 N -0.522 5.522 19 Si 0.723 3.277 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.067 4.067 24 C -0.080 4.080 25 C -0.119 4.119 26 C -0.134 4.134 27 C -0.149 4.149 28 C -0.130 4.130 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.115 0.885 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.038 0.962 42 H 0.072 0.928 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.430 0.849 -10.324 17.764 hybrid contribution 0.924 -0.372 -1.392 1.712 sum -13.506 0.476 -11.717 17.887 Atomic orbital electron populations 1.24255 0.94388 1.02379 0.98384 1.20600 0.94390 0.93025 1.01625 1.20782 1.01589 0.94105 0.80770 1.46293 1.12495 1.45951 1.12921 1.24515 0.97514 1.02198 0.87611 1.20080 0.87251 1.01877 1.02322 1.73981 1.00526 1.18515 1.20105 1.74887 1.10831 1.15158 1.14841 1.23257 0.88370 0.96267 0.89450 1.59417 1.06285 1.34779 1.16988 1.22360 0.99870 0.95873 0.93040 1.19293 0.88087 0.93287 0.86422 0.93597 1.22559 1.01611 0.98064 1.01697 1.20959 1.05959 1.33215 0.94662 0.91965 1.24857 0.97910 0.96195 0.94768 1.69911 1.33469 1.45178 1.03671 0.86611 0.81902 0.80555 0.78614 1.20368 1.21346 1.20234 1.18732 0.99168 0.93527 0.95306 1.21248 0.93450 0.95751 0.97588 1.21174 0.97981 0.94034 0.98718 1.21201 0.98620 0.99709 0.93912 1.20926 0.98574 0.96976 0.98466 1.21041 1.00294 0.94389 0.97265 0.87713 0.87588 0.87659 0.88787 0.90303 0.89301 0.91267 0.95056 0.88502 0.93782 0.92965 0.89466 0.96212 0.92790 0.86083 0.85555 0.86516 0.86619 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 13.94 28.83 0.40 -1.08 16 2 C -0.10 -1.16 5.03 -102.62 -0.52 -1.67 16 3 C 0.15 1.85 6.07 -5.20 -0.03 1.82 16 4 N -0.48 -7.72 2.79 -115.37 -0.32 -8.04 16 5 C 0.15 2.38 8.07 -154.01 -1.24 1.14 16 6 C -0.06 -0.57 10.23 36.01 0.37 -0.20 16 7 N -0.29 -5.95 12.18 32.99 0.40 -5.55 16 8 N -0.31 -7.13 8.96 30.32 0.27 -6.86 16 9 C 0.38 7.71 5.01 -318.87 -1.60 6.11 16 10 N -0.45 -9.39 3.68 -176.09 -0.65 -10.04 16 11 C 0.04 0.67 8.50 60.06 0.51 1.18 16 12 C 0.23 5.81 2.08 -68.87 -0.14 5.67 16 13 H 0.05 1.31 8.11 -51.93 -0.42 0.89 16 14 C -0.18 -4.57 8.28 37.16 0.31 -4.26 16 15 C -0.51 -13.26 7.80 -34.44 -0.27 -13.53 16 16 H 0.06 1.60 6.82 -52.49 -0.36 1.24 16 17 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.88 -24.95 11.32 55.43 0.63 -24.33 16 19 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C -0.07 -0.97 5.32 -105.01 -0.56 -1.53 16 24 C -0.06 -1.08 8.99 -39.19 -0.35 -1.43 16 25 C -0.10 -1.73 10.03 -39.64 -0.40 -2.12 16 26 C -0.12 -1.69 10.04 -39.50 -0.40 -2.09 16 27 C -0.13 -1.69 10.03 -39.64 -0.40 -2.09 16 28 C -0.11 -1.43 9.71 -39.20 -0.38 -1.81 16 29 H 0.10 0.75 7.99 -52.49 -0.42 0.33 16 30 H 0.11 0.97 8.05 -52.49 -0.42 0.55 16 31 H 0.11 1.37 5.84 -51.93 -0.30 1.07 16 32 H 0.09 0.84 7.29 -51.93 -0.38 0.46 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.52 7.39 -51.93 -0.38 0.13 16 36 H 0.03 0.60 6.82 -51.93 -0.35 0.25 16 37 H 0.10 1.89 6.28 -51.93 -0.33 1.57 16 38 H 0.04 0.68 6.04 -51.93 -0.31 0.37 16 39 H 0.05 1.33 5.40 -51.93 -0.28 1.05 16 40 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 41 H 0.02 0.47 6.61 -51.93 -0.34 0.13 16 42 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.12 2.46 5.97 -52.49 -0.31 2.14 16 44 H 0.13 2.27 8.06 -52.49 -0.42 1.84 16 45 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 46 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 47 H 0.11 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 375.72 15.07 5.66 5.66 Total: -1.00 -31.28 375.72 -10.42 -41.70 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.60 Total: 5.93 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -4.79 Total: -14.25 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.33 Total: -54.81 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.28 -10.42 -41.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001749242426.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.920 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds