Wall clock time and date at job start Tue Mar 31 2020 14:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00292 * 2 1 4 4 C 1.52997 * 109.47043 * 89.99724 * 3 2 1 5 5 N 1.46904 * 109.46950 * 180.02562 * 4 3 2 6 6 C 1.46899 * 111.00029 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47254 * 179.97438 * 6 5 4 8 8 C 1.53959 * 113.58107 * 274.24347 * 7 6 5 9 9 C 1.53074 * 86.72341 * 220.68590 * 8 7 6 10 10 C 1.52916 * 121.16858 * 150.58303 * 9 8 7 11 11 C 1.53947 * 86.77851 * 100.75281 * 10 9 8 12 12 C 1.52905 * 121.06947 * 259.11818 * 9 8 7 13 13 C 1.52912 * 88.06848 * 24.83462 * 9 8 7 14 14 C 1.34778 * 119.99800 * 179.97438 * 2 1 3 15 15 O 1.21279 * 119.99884 * 180.02562 * 14 2 1 16 16 C 1.50703 * 120.00203 * 0.02562 * 14 2 1 17 17 S 1.80997 * 109.47378 * 179.97438 * 16 14 2 18 18 C 1.76194 * 100.00104 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00248 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00229 * 180.02562 * 18 17 16 21 21 N 1.31635 * 120.00094 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00579 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46447 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47483 * 119.99406 * 22 20 18 25 25 H 1.48495 * 109.47268 * 240.00305 * 22 20 18 26 26 H 1.09006 * 109.47290 * 90.00360 * 1 2 3 27 27 H 1.09002 * 109.47595 * 210.00372 * 1 2 3 28 28 H 1.08996 * 109.47213 * 330.00610 * 1 2 3 29 29 H 1.09005 * 109.46893 * 329.99542 * 3 2 1 30 30 H 1.09004 * 109.47411 * 210.00028 * 3 2 1 31 31 H 1.08995 * 109.47319 * 60.00302 * 4 3 2 32 32 H 1.09003 * 109.47435 * 299.99626 * 4 3 2 33 33 H 1.00908 * 110.99583 * 303.94989 * 5 4 3 34 34 H 1.09002 * 109.47043 * 299.99792 * 6 5 4 35 35 H 1.09001 * 109.47354 * 59.99854 * 6 5 4 36 36 H 1.09006 * 112.82236 * 45.32971 * 7 6 5 37 37 H 1.08995 * 113.66082 * 335.13627 * 8 7 6 38 38 H 1.09003 * 113.66031 * 106.18898 * 8 7 6 39 39 H 1.08999 * 113.66046 * 215.22576 * 10 9 8 40 40 H 1.08996 * 113.66404 * 346.28223 * 10 9 8 41 41 H 1.08999 * 113.58237 * 270.12908 * 11 10 9 42 42 H 1.09005 * 113.65011 * 139.34429 * 11 10 9 43 43 H 1.08997 * 113.65969 * 13.63641 * 12 9 8 44 44 H 1.09002 * 113.66158 * 144.69082 * 12 9 8 45 45 H 1.09003 * 113.66129 * 220.69439 * 13 9 8 46 46 H 1.08993 * 113.66315 * 89.63647 * 13 9 8 47 47 H 1.09003 * 109.47201 * 300.00359 * 16 14 2 48 48 H 1.09005 * 109.46803 * 59.99718 * 16 14 2 49 49 H 0.96999 * 120.00531 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 7 3.1865 2.9828 1.4425 6 6 3.4502 3.4385 2.8139 7 6 4.2150 4.7630 2.7730 8 6 5.7400 4.5901 2.6517 9 6 5.8618 5.7373 3.6579 10 6 7.0512 5.8280 4.6146 11 6 7.6343 6.8782 3.6518 12 6 6.1899 7.1583 3.1986 13 6 4.4658 5.3725 4.1643 14 6 2.1388 -1.1672 0.0005 15 8 3.3516 -1.1673 0.0010 16 6 1.3853 -2.4724 0.0005 17 16 2.5614 -3.8481 0.0005 18 6 1.4413 -5.2082 0.0013 19 1 0.3760 -5.0305 0.0012 20 6 1.9280 -6.5081 0.0020 21 7 3.2263 -6.7248 0.0027 22 14 0.7405 -7.9501 0.0021 23 1 -0.6549 -7.4421 0.0020 24 1 0.9666 -8.7777 -1.2099 25 1 0.9657 -8.7767 1.2151 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5137 29 1 1.6084 2.0283 -0.5139 30 1 3.1500 1.1383 -0.5138 31 1 3.0415 0.9507 1.9563 32 1 1.5000 1.8408 1.9563 33 1 4.0440 2.9055 0.9162 34 1 2.5049 3.5804 3.3377 35 1 4.0467 2.6909 3.3368 36 1 3.7979 5.4701 2.0559 37 1 6.1035 3.6351 3.0309 38 1 6.1303 4.8312 1.6629 39 1 6.7943 6.2283 5.5953 40 1 7.6387 4.9116 4.6703 41 1 8.2618 6.4517 2.8693 42 1 8.1040 7.7220 4.1575 43 1 6.0895 7.3046 2.1232 44 1 5.6909 7.9326 3.7813 45 1 3.8396 6.2376 4.3823 46 1 4.4707 4.6377 4.9693 47 1 0.7582 -2.5299 0.8903 48 1 0.7589 -2.5302 -0.8897 49 1 3.5665 -7.6332 0.0028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753170861.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:46 Heat of formation + Delta-G solvation = -0.794018 kcal Electronic energy + Delta-G solvation = -24525.413055 eV Core-core repulsion = 21000.706855 eV Total energy + Delta-G solvation = -3524.706200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.79577 -39.49487 -36.99608 -35.53863 -34.32373 -32.43480 -30.63314 -28.51343 -26.82004 -26.14332 -26.10881 -25.62829 -25.23855 -22.92301 -22.24879 -20.36356 -19.14235 -18.29064 -17.68065 -16.73492 -16.32335 -16.03542 -15.82412 -15.61789 -15.30921 -14.84081 -14.81013 -14.46518 -13.86478 -13.71845 -13.52944 -13.13362 -13.08405 -12.94508 -12.74737 -12.55055 -12.40819 -12.34549 -12.18976 -12.08175 -11.71998 -11.64176 -11.21586 -11.09917 -11.07547 -11.02229 -10.87937 -10.75319 -10.47017 -10.38276 -9.97828 -9.80184 -9.37997 -9.08035 -8.66676 -8.51461 -8.22821 -6.50800 -6.22385 -3.92950 2.90866 3.04686 3.20950 3.25305 3.30467 3.57424 3.96549 4.07501 4.18624 4.19678 4.30737 4.43309 4.49037 4.54924 4.81138 4.99120 5.05627 5.09966 5.12705 5.15042 5.18225 5.19314 5.31651 5.35472 5.43286 5.45159 5.46327 5.48961 5.50420 5.53895 5.56180 5.58704 5.66190 5.71289 5.72432 5.75018 5.85681 5.88472 5.98771 6.02147 6.13226 6.14172 6.25102 6.59342 6.84362 7.18598 7.53248 7.59387 8.34774 8.55331 9.23038 10.85109 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.022673 B = 0.001783 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.635768 B =15702.319667 C =16438.255127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.624 5.624 3 C 0.121 3.879 4 C 0.043 3.957 5 N -0.687 5.687 6 C 0.069 3.931 7 C -0.103 4.103 8 C -0.115 4.115 9 C -0.106 4.106 10 C -0.130 4.130 11 C -0.141 4.141 12 C -0.117 4.117 13 C -0.121 4.121 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.150 4.150 17 S -0.063 6.063 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.342 0.658 34 H 0.071 0.929 35 H 0.032 0.968 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.006 27.670 6.462 28.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.361 5.361 3 C -0.003 4.003 4 C -0.088 4.088 5 N -0.318 5.318 6 C -0.060 4.060 7 C -0.122 4.122 8 C -0.152 4.152 9 C -0.106 4.106 10 C -0.167 4.167 11 C -0.178 4.178 12 C -0.154 4.154 13 C -0.159 4.159 14 C 0.320 3.680 15 O -0.391 6.391 16 C -0.301 4.301 17 S 0.164 5.836 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.206 1.206 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.160 0.840 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.086 0.914 46 H 0.100 0.900 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.354 27.907 6.385 28.660 hybrid contribution -1.583 -1.577 0.342 2.261 sum -0.229 26.330 6.727 27.176 Atomic orbital electron populations 1.21773 0.79555 1.03097 1.01840 1.47827 1.06916 1.05613 1.75714 1.21256 0.98297 0.84697 0.96024 1.22320 0.98733 0.89855 0.97852 1.60459 1.27113 1.30010 1.14206 1.21945 0.99423 0.95016 0.89631 1.22532 0.94705 0.97019 0.97918 1.22826 0.96088 0.97579 0.98704 1.22437 0.94773 0.95768 0.97587 1.22758 0.96951 0.99426 0.97590 1.22817 0.96390 0.99129 0.99459 1.22638 0.96396 0.95238 1.01108 1.22807 0.95921 1.00518 0.96690 1.20377 0.87951 0.84640 0.75034 1.90686 1.13765 1.86834 1.47774 1.23559 1.04537 0.97235 1.04735 1.85390 1.08149 0.93399 1.96699 1.22902 0.94346 0.92196 1.58812 0.90878 1.24996 0.95677 0.98391 0.94545 1.70030 1.11740 1.21555 1.46969 0.86114 0.80350 0.81113 0.77904 1.19605 1.20548 1.20578 0.92633 0.90697 0.91339 0.90068 0.90022 0.94424 0.91125 0.84029 0.91082 0.95013 0.88452 0.89905 0.91251 0.90139 0.91457 0.90253 0.91657 0.91356 0.90007 0.91405 0.89998 0.89268 0.89225 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.24 59.84 0.61 1.46 16 2 N -0.62 -8.88 2.87 -181.57 -0.52 -9.40 16 3 C 0.12 1.49 5.67 -4.05 -0.02 1.46 16 4 C 0.04 0.50 6.01 -3.82 -0.02 0.48 16 5 N -0.69 -6.86 6.50 -113.78 -0.74 -7.60 16 6 C 0.07 0.62 5.51 -3.83 -0.02 0.60 16 7 C -0.10 -0.79 3.89 -89.64 -0.35 -1.14 16 8 C -0.11 -0.88 7.41 -26.19 -0.19 -1.07 16 9 C -0.11 -0.74 1.11 -154.62 -0.17 -0.92 16 10 C -0.13 -0.88 7.84 -26.28 -0.21 -1.09 16 11 C -0.14 -0.88 8.08 -25.75 -0.21 -1.09 16 12 C -0.12 -0.74 7.84 -26.28 -0.21 -0.95 16 13 C -0.12 -0.86 7.40 -26.28 -0.19 -1.05 16 14 C 0.53 10.20 7.69 -10.98 -0.08 10.12 16 15 O -0.52 -11.83 15.44 5.56 0.09 -11.74 16 16 C -0.15 -3.08 4.71 36.01 0.17 -2.91 16 17 S -0.06 -1.72 20.57 -107.50 -2.21 -3.94 16 18 C -0.53 -15.26 9.50 30.94 0.29 -14.97 16 19 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 22 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 28 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 29 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.08 1.14 7.42 -51.93 -0.39 0.76 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.34 3.37 8.73 -39.29 -0.34 3.03 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.03 0.32 7.87 -51.93 -0.41 -0.09 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.69 7.92 -51.93 -0.41 0.28 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 47 H 0.09 1.69 7.40 -51.92 -0.38 1.30 16 48 H 0.09 1.71 8.11 -51.91 -0.42 1.29 16 49 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 407.98 15.07 6.15 6.15 Total: -1.00 -33.24 407.98 -11.22 -44.45 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -8.99 Total: 0.24 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -0.70 Total: -9.07 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: -0.53 Total: -42.49 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.24 -11.22 -44.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753170861.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.660 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds