Wall clock time and date at job start Tue Mar 31 2020 14:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00292 * 2 1 4 4 C 1.52997 * 109.47043 * 89.99724 * 3 2 1 5 5 N 1.46904 * 109.46950 * 180.02562 * 4 3 2 6 6 C 1.46899 * 111.00029 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47254 * 179.97438 * 6 5 4 8 8 C 1.53959 * 113.58107 * 274.24347 * 7 6 5 9 9 C 1.53074 * 86.72341 * 220.68590 * 8 7 6 10 10 C 1.52916 * 121.16858 * 150.58303 * 9 8 7 11 11 C 1.53947 * 86.77851 * 100.75281 * 10 9 8 12 12 C 1.52905 * 121.06947 * 259.11818 * 9 8 7 13 13 C 1.52912 * 88.06848 * 24.83462 * 9 8 7 14 14 C 1.34778 * 119.99800 * 179.97438 * 2 1 3 15 15 O 1.21279 * 119.99884 * 180.02562 * 14 2 1 16 16 C 1.50703 * 120.00203 * 0.02562 * 14 2 1 17 17 S 1.80997 * 109.47378 * 179.97438 * 16 14 2 18 18 C 1.76194 * 100.00104 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00248 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00229 * 180.02562 * 18 17 16 21 21 N 1.31635 * 120.00094 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00579 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46447 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47483 * 119.99406 * 22 20 18 25 25 H 1.48495 * 109.47268 * 240.00305 * 22 20 18 26 26 H 1.09006 * 109.47290 * 90.00360 * 1 2 3 27 27 H 1.09002 * 109.47595 * 210.00372 * 1 2 3 28 28 H 1.08996 * 109.47213 * 330.00610 * 1 2 3 29 29 H 1.09005 * 109.46893 * 329.99542 * 3 2 1 30 30 H 1.09004 * 109.47411 * 210.00028 * 3 2 1 31 31 H 1.08995 * 109.47319 * 60.00302 * 4 3 2 32 32 H 1.09003 * 109.47435 * 299.99626 * 4 3 2 33 33 H 1.00908 * 110.99583 * 303.94989 * 5 4 3 34 34 H 1.09002 * 109.47043 * 299.99792 * 6 5 4 35 35 H 1.09001 * 109.47354 * 59.99854 * 6 5 4 36 36 H 1.09006 * 112.82236 * 45.32971 * 7 6 5 37 37 H 1.08995 * 113.66082 * 335.13627 * 8 7 6 38 38 H 1.09003 * 113.66031 * 106.18898 * 8 7 6 39 39 H 1.08999 * 113.66046 * 215.22576 * 10 9 8 40 40 H 1.08996 * 113.66404 * 346.28223 * 10 9 8 41 41 H 1.08999 * 113.58237 * 270.12908 * 11 10 9 42 42 H 1.09005 * 113.65011 * 139.34429 * 11 10 9 43 43 H 1.08997 * 113.65969 * 13.63641 * 12 9 8 44 44 H 1.09002 * 113.66158 * 144.69082 * 12 9 8 45 45 H 1.09003 * 113.66129 * 220.69439 * 13 9 8 46 46 H 1.08993 * 113.66315 * 89.63647 * 13 9 8 47 47 H 1.09003 * 109.47201 * 300.00359 * 16 14 2 48 48 H 1.09005 * 109.46803 * 59.99718 * 16 14 2 49 49 H 0.96999 * 120.00531 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 7 3.1865 2.9828 1.4425 6 6 3.4502 3.4385 2.8139 7 6 4.2150 4.7630 2.7730 8 6 5.7400 4.5901 2.6517 9 6 5.8618 5.7373 3.6579 10 6 7.0512 5.8280 4.6146 11 6 7.6343 6.8782 3.6518 12 6 6.1899 7.1583 3.1986 13 6 4.4658 5.3725 4.1643 14 6 2.1388 -1.1672 0.0005 15 8 3.3516 -1.1673 0.0010 16 6 1.3853 -2.4724 0.0005 17 16 2.5614 -3.8481 0.0005 18 6 1.4413 -5.2082 0.0013 19 1 0.3760 -5.0305 0.0012 20 6 1.9280 -6.5081 0.0020 21 7 3.2263 -6.7248 0.0027 22 14 0.7405 -7.9501 0.0021 23 1 -0.6549 -7.4421 0.0020 24 1 0.9666 -8.7777 -1.2099 25 1 0.9657 -8.7767 1.2151 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5137 29 1 1.6084 2.0283 -0.5139 30 1 3.1500 1.1383 -0.5138 31 1 3.0415 0.9507 1.9563 32 1 1.5000 1.8408 1.9563 33 1 4.0440 2.9055 0.9162 34 1 2.5049 3.5804 3.3377 35 1 4.0467 2.6909 3.3368 36 1 3.7979 5.4701 2.0559 37 1 6.1035 3.6351 3.0309 38 1 6.1303 4.8312 1.6629 39 1 6.7943 6.2283 5.5953 40 1 7.6387 4.9116 4.6703 41 1 8.2618 6.4517 2.8693 42 1 8.1040 7.7220 4.1575 43 1 6.0895 7.3046 2.1232 44 1 5.6909 7.9326 3.7813 45 1 3.8396 6.2376 4.3823 46 1 4.4707 4.6377 4.9693 47 1 0.7582 -2.5299 0.8903 48 1 0.7589 -2.5302 -0.8897 49 1 3.5665 -7.6332 0.0028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753170861.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:46 Heat of formation + Delta-G solvation = -20.941350 kcal Electronic energy + Delta-G solvation = -24526.286708 eV Core-core repulsion = 21000.706855 eV Total energy + Delta-G solvation = -3525.579854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.37987 -40.87658 -37.88489 -36.62423 -35.16713 -34.59661 -31.86984 -29.75670 -27.72944 -27.69864 -26.75298 -26.63992 -26.28248 -23.65250 -23.17280 -21.07215 -20.54479 -19.54361 -18.85510 -18.11117 -17.36350 -17.13882 -16.89127 -16.72327 -16.30402 -16.19711 -15.95255 -15.64433 -15.20402 -14.76233 -14.59724 -14.30521 -14.20578 -14.03946 -13.65235 -13.56614 -13.39458 -13.24041 -13.16623 -12.95629 -12.94415 -12.89616 -12.66389 -12.59859 -12.25178 -12.09969 -11.75539 -11.70259 -11.51223 -11.16908 -11.03710 -10.95569 -10.92917 -10.55610 -10.27859 -9.74061 -9.51349 -8.69014 -8.35879 -6.14475 1.24835 1.40908 1.45239 1.54714 1.56941 2.08056 2.26359 2.98383 3.14086 3.27991 3.50633 3.55673 3.70597 3.71759 3.84118 3.92158 3.96973 4.02832 4.13342 4.20825 4.33473 4.39709 4.46557 4.48021 4.50810 4.57042 4.67832 4.73555 4.78076 4.80968 4.83644 4.87431 4.90004 4.91648 4.93327 4.97970 5.06308 5.11224 5.13175 5.16777 5.40907 5.48139 5.51719 5.56642 5.66031 5.95815 6.18784 6.25031 6.32970 7.05400 7.12290 8.73679 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.022673 B = 0.001783 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.635768 B =15702.319667 C =16438.255127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.610 5.610 3 C 0.122 3.878 4 C 0.054 3.946 5 N -0.680 5.680 6 C 0.071 3.929 7 C -0.096 4.096 8 C -0.118 4.118 9 C -0.108 4.108 10 C -0.133 4.133 11 C -0.140 4.140 12 C -0.113 4.113 13 C -0.117 4.117 14 C 0.529 3.471 15 O -0.566 6.566 16 C -0.123 4.123 17 S -0.155 6.155 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.274 1.274 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.060 0.940 31 H 0.003 0.997 32 H 0.084 0.916 33 H 0.342 0.658 34 H 0.076 0.924 35 H 0.018 0.982 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.108 0.892 48 H 0.108 0.892 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 29.215 6.605 30.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.344 5.344 3 C -0.001 4.001 4 C -0.077 4.077 5 N -0.310 5.310 6 C -0.058 4.058 7 C -0.114 4.114 8 C -0.155 4.155 9 C -0.108 4.108 10 C -0.170 4.170 11 C -0.177 4.177 12 C -0.150 4.150 13 C -0.155 4.155 14 C 0.316 3.684 15 O -0.444 6.444 16 C -0.275 4.275 17 S 0.072 5.928 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.200 1.200 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.119 0.881 29 H 0.132 0.868 30 H 0.079 0.921 31 H 0.021 0.979 32 H 0.102 0.898 33 H 0.159 0.841 34 H 0.094 0.906 35 H 0.037 0.963 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.126 0.874 48 H 0.126 0.874 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.398 29.505 6.529 30.251 hybrid contribution -0.766 -1.908 0.302 2.078 sum -2.164 27.597 6.831 28.512 Atomic orbital electron populations 1.22115 0.76663 1.04763 1.03530 1.47829 1.08661 1.04601 1.73348 1.21394 0.97873 0.84253 0.96561 1.22175 0.98925 0.89559 0.97033 1.60516 1.27087 1.28674 1.14752 1.21969 0.99623 0.95325 0.88915 1.22458 0.94245 0.96205 0.98516 1.22804 0.96255 0.97501 0.98932 1.22461 0.94896 0.95991 0.97439 1.22794 0.96831 0.99378 0.98014 1.22818 0.96477 0.99191 0.99249 1.22649 0.96328 0.94812 1.01255 1.22786 0.96013 1.00659 0.96079 1.20200 0.87309 0.85617 0.75257 1.90671 1.15720 1.87530 1.50511 1.23380 1.02696 0.94965 1.06412 1.85587 1.12788 0.97399 1.97030 1.23231 0.94636 0.92595 1.58797 0.89841 1.26148 0.97619 1.01725 0.93708 1.70195 1.14148 1.22428 1.48075 0.84888 0.78192 0.76679 0.78076 1.17903 1.19903 1.19953 0.90866 0.90720 0.88111 0.86775 0.92135 0.97891 0.89750 0.84052 0.90601 0.96347 0.88261 0.91035 0.91312 0.89481 0.92226 0.90604 0.90791 0.91359 0.89098 0.90495 0.90291 0.87402 0.87401 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 10.24 127.77 1.31 2.54 16 2 N -0.61 -16.30 2.87 -846.76 -2.43 -18.74 16 3 C 0.12 2.82 5.67 86.38 0.49 3.31 16 4 C 0.05 1.20 6.01 86.30 0.52 1.72 16 5 N -0.68 -12.95 6.50 -513.89 -3.34 -16.29 16 6 C 0.07 1.23 5.51 86.30 0.48 1.71 16 7 C -0.10 -1.38 3.89 -10.16 -0.04 -1.42 16 8 C -0.12 -1.79 7.41 30.94 0.23 -1.56 16 9 C -0.11 -1.43 1.11 -52.26 -0.06 -1.49 16 10 C -0.13 -1.71 7.84 30.89 0.24 -1.47 16 11 C -0.14 -1.62 8.08 31.23 0.25 -1.37 16 12 C -0.11 -1.28 7.84 30.88 0.24 -1.04 16 13 C -0.12 -1.52 7.40 30.89 0.23 -1.30 16 14 C 0.53 20.26 7.69 87.66 0.67 20.93 16 15 O -0.57 -26.91 15.44 -3.03 -0.05 -26.96 16 16 C -0.12 -5.00 4.71 71.24 0.34 -4.67 16 17 S -0.16 -8.75 20.57 -56.49 -1.16 -9.91 16 18 C -0.54 -31.29 9.50 67.95 0.65 -30.64 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.72 5.49 84.86 0.47 1.19 16 21 N -0.91 -56.37 13.22 21.65 0.29 -56.09 16 22 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.07 1.34 6.44 -2.39 -0.02 1.33 16 28 H 0.10 1.17 8.07 -2.39 -0.02 1.15 16 29 H 0.11 1.95 8.07 -2.38 -0.02 1.93 16 30 H 0.06 1.69 7.42 -2.39 -0.02 1.68 16 31 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.34 6.67 8.73 -89.69 -0.78 5.88 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.02 0.37 7.87 -2.39 -0.02 0.35 16 36 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.07 1.25 7.92 -2.39 -0.02 1.23 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.08 1.08 8.10 -2.39 -0.02 1.06 16 47 H 0.11 3.95 7.40 -2.39 -0.02 3.93 16 48 H 0.11 3.96 8.11 -2.39 -0.02 3.94 16 49 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -74.81 407.98 1.47 -73.34 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.13 Total: 22.50 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 6.01 Total: -13.55 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -5.49 Total: -91.12 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.05 Total: -26.96 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.91 kcal Total: -74.81 1.47 -73.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753170861.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.403 kcal (2) G-P(sol) polarization free energy of solvation -74.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds