Wall clock time and date at job start Tue Mar 31 2020 14:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39714 * 119.99451 * 74.52985 * 3 2 1 5 5 C 1.37604 * 120.00500 * 179.97438 * 4 3 2 6 6 C 1.39744 * 119.99205 * 359.97359 * 5 4 3 7 7 C 1.47689 * 120.00317 * 179.97438 * 6 5 4 8 8 O 1.21574 * 119.99753 * 326.10952 * 7 6 5 9 9 N 1.34775 * 119.99758 * 145.82495 * 7 6 5 10 10 C 1.46924 * 120.63335 * 354.26792 * 9 7 6 11 11 C 1.52763 * 109.00261 * 233.57946 * 10 9 7 12 12 C 1.53043 * 109.38489 * 305.58118 * 11 10 9 13 13 C 1.52998 * 109.45040 * 181.25488 * 12 11 10 14 14 N 1.46508 * 109.47047 * 64.94000 * 13 12 11 15 15 C 1.46500 * 119.99612 * 89.99794 * 14 13 12 16 16 C 1.36936 * 119.99881 * 270.00326 * 14 13 12 17 17 H 1.07999 * 120.00176 * 21.19107 * 16 14 13 18 18 C 1.38812 * 119.99363 * 201.19083 * 16 14 13 19 19 N 1.31620 * 120.00176 * 15.63953 * 18 16 14 20 20 Si 1.86801 * 119.99838 * 195.63173 * 18 16 14 21 21 H 1.48506 * 109.46740 * 60.00640 * 20 18 16 22 22 H 1.48499 * 109.47352 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47503 * 300.00598 * 20 18 16 24 24 C 1.53041 * 109.53412 * 61.24646 * 12 11 10 25 25 C 1.46930 * 120.62826 * 174.53484 * 9 7 6 26 26 C 1.39744 * 119.99572 * 0.25479 * 6 5 4 27 27 C 1.37600 * 119.99531 * 359.51410 * 26 6 5 28 28 H 4.51952 * 14.06538 * 0.02562 * 4 2 1 29 29 H 1.08003 * 119.99995 * 359.96973 * 4 3 2 30 30 H 1.07994 * 120.00542 * 179.97438 * 5 4 3 31 31 H 1.08996 * 109.58477 * 353.40628 * 10 9 7 32 32 H 1.08993 * 109.59168 * 113.84221 * 10 9 7 33 33 H 1.09003 * 109.56601 * 185.55036 * 11 10 9 34 34 H 1.09000 * 109.39150 * 65.51387 * 11 10 9 35 35 H 1.08990 * 109.46037 * 301.22535 * 12 11 10 36 36 H 1.08994 * 109.47396 * 184.94363 * 13 12 11 37 37 H 1.09005 * 109.47027 * 304.94360 * 13 12 11 38 38 H 1.09003 * 109.46801 * 95.23911 * 15 14 13 39 39 H 1.08997 * 109.47076 * 215.23716 * 15 14 13 40 40 H 1.08995 * 109.47201 * 335.23998 * 15 14 13 41 41 H 0.96999 * 119.99764 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.49745 * 178.68203 * 24 12 11 43 43 H 1.08997 * 109.52962 * 58.60029 * 24 12 11 44 44 H 1.08991 * 109.59256 * 246.16009 * 25 9 7 45 45 H 1.08999 * 109.58727 * 6.44621 * 25 9 7 46 46 H 1.08000 * 120.00538 * 179.74518 * 26 6 5 47 47 H 1.07999 * 120.00063 * 180.23402 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3046 -0.3218 -1.1662 5 6 4.6806 -0.3207 -1.1666 6 6 5.3793 0.0034 -0.0005 7 6 6.8562 0.0041 -0.0005 8 8 7.4643 -0.7952 -0.6855 9 7 7.5296 0.8946 0.7545 10 6 6.8140 1.9500 1.4843 11 6 7.4173 3.3048 1.1180 12 6 8.9258 3.2751 1.3741 13 6 9.5268 4.6412 1.0373 14 7 8.9955 5.6490 1.9585 15 6 9.6892 5.9278 3.2183 16 6 7.8505 6.3301 1.6419 17 1 7.1590 5.9185 0.9217 18 6 7.5788 7.5496 2.2468 19 7 8.5346 8.1993 2.8767 20 14 5.8566 8.2686 2.1668 21 1 4.8983 7.3304 2.8047 22 1 5.8287 9.5680 2.8853 23 1 5.4732 8.4788 0.7476 24 6 9.5731 2.2026 0.4949 25 6 8.9938 0.8319 0.8587 26 6 4.6804 0.3213 1.1671 27 6 3.3044 0.3247 1.1659 28 1 -1.0501 0.0004 -0.0004 29 1 2.7646 -0.5720 -2.0675 30 1 5.2206 -0.5704 -2.0679 31 1 5.7596 1.9345 1.2085 32 1 6.9157 1.7859 2.5570 33 1 6.9602 4.0847 1.7271 34 1 7.2312 3.5107 0.0639 35 1 9.1116 3.0453 2.4232 36 1 10.6113 4.5952 1.1352 37 1 9.2655 4.9108 0.0139 38 1 10.3539 6.7815 3.0858 39 1 8.9574 6.1540 3.9937 40 1 10.2726 5.0554 3.5127 41 1 8.3446 9.0512 3.2997 42 1 10.6504 2.1979 0.6605 43 1 9.3672 2.4180 -0.5536 44 1 9.2770 0.5747 1.8793 45 1 9.3770 0.0770 0.1720 46 1 5.2202 0.5678 2.0695 47 1 2.7642 0.5741 2.0672 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753364737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:17 Heat of formation + Delta-G solvation = 75.244489 kcal Electronic energy + Delta-G solvation = -27416.878168 eV Core-core repulsion = 23760.025294 eV Total energy + Delta-G solvation = -3656.852874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.71832 -38.91489 -37.60451 -35.51214 -34.23216 -33.05733 -31.63397 -31.11506 -30.60817 -30.17636 -27.13294 -25.88411 -24.83616 -23.55800 -23.11023 -22.48082 -21.11068 -20.06326 -19.32350 -19.14146 -17.40570 -16.70275 -16.38705 -16.00790 -15.50409 -14.99730 -14.81223 -14.74524 -14.28771 -13.93297 -13.78959 -13.72267 -13.47364 -13.43003 -13.19467 -12.80905 -12.74944 -12.32977 -11.99611 -11.89674 -11.64918 -11.37538 -11.22371 -11.01872 -10.85542 -10.81958 -10.76593 -10.47843 -10.40806 -10.27955 -10.04821 -9.92597 -9.75197 -9.58419 -9.22912 -8.83699 -8.57531 -8.48547 -6.72715 -5.71821 -3.15678 0.32898 1.07436 2.34200 2.40637 2.87823 3.09755 3.37329 3.43442 3.43808 3.70848 3.89782 4.36792 4.49695 4.57392 4.63268 4.94349 5.05397 5.10662 5.17476 5.20870 5.24113 5.32623 5.43575 5.46969 5.57192 5.64310 5.68598 5.70957 5.82109 5.92020 5.99608 6.04019 6.10415 6.12640 6.15514 6.28882 6.43934 6.50742 6.52469 6.60277 6.66004 6.77567 6.96391 7.01514 7.18073 7.37833 7.39899 7.72506 7.80866 8.10068 8.40108 9.24654 9.89875 10.38943 11.33122 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010565 B = 0.003611 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.548983 B = 7751.303680 C = 9960.342891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.152 4.152 3 C 0.028 3.972 4 C -0.103 4.103 5 C -0.063 4.063 6 C -0.118 4.118 7 C 0.557 3.443 8 O -0.544 6.544 9 N -0.598 5.598 10 C 0.089 3.911 11 C -0.125 4.125 12 C -0.105 4.105 13 C 0.156 3.844 14 N -0.602 5.602 15 C 0.163 3.837 16 C -0.253 4.253 17 H 0.071 0.929 18 C 0.001 3.999 19 N -0.907 5.907 20 Si 0.898 3.102 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.284 1.284 24 C -0.128 4.128 25 C 0.114 3.886 26 C -0.089 4.089 27 C -0.102 4.102 28 H 0.225 0.775 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.034 0.966 37 H 0.044 0.956 38 H 0.028 0.972 39 H 0.039 0.961 40 H -0.003 1.003 41 H 0.252 0.748 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.143 0.857 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.914 -17.286 -3.335 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.152 4.152 3 C 0.028 3.972 4 C -0.121 4.121 5 C -0.082 4.082 6 C -0.121 4.121 7 C 0.346 3.654 8 O -0.423 6.423 9 N -0.330 5.330 10 C -0.033 4.033 11 C -0.163 4.163 12 C -0.127 4.127 13 C 0.029 3.971 14 N -0.324 5.324 15 C 0.018 3.982 16 C -0.382 4.382 17 H 0.089 0.911 18 C -0.198 4.198 19 N -0.552 5.552 20 Si 0.728 3.272 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.210 1.210 24 C -0.167 4.167 25 C -0.008 4.008 26 C -0.107 4.107 27 C -0.120 4.120 28 H 0.242 0.758 29 H 0.151 0.849 30 H 0.155 0.845 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.161 0.839 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.545 -17.498 -3.577 19.799 hybrid contribution -1.150 0.645 0.105 1.323 sum -9.695 -16.853 -3.471 19.750 Atomic orbital electron populations 1.24929 0.95786 0.98813 0.99092 1.20025 0.92020 1.01673 1.01529 1.16153 0.86696 1.00043 0.94334 1.21142 0.93700 0.99844 0.97434 1.21116 0.93454 0.95935 0.97696 1.20055 0.93322 1.03383 0.95290 1.18277 0.86958 0.80908 0.79241 1.90760 1.69676 1.40233 1.41661 1.48075 1.07737 1.29761 1.47472 1.22382 0.97137 0.87801 0.95973 1.21952 0.96537 0.95449 1.02340 1.21818 0.95066 0.96940 0.98855 1.20751 0.95003 0.87534 0.93817 1.43894 1.28405 1.42551 1.17585 1.20756 0.95339 0.94695 0.87368 1.19167 0.96335 0.99419 1.23322 0.91114 1.24969 0.97443 0.95986 1.01361 1.70079 1.30253 1.14949 1.39895 0.86432 0.84785 0.78274 0.77668 1.21121 1.21707 1.21002 1.21946 0.99959 0.94033 1.00729 1.21646 0.78619 0.98805 1.01758 1.21525 0.94061 0.96923 0.98181 1.21158 0.93735 0.99582 0.97564 0.75799 0.84942 0.84453 0.88948 0.91220 0.87882 0.92446 0.91806 0.94730 0.93727 0.95337 0.94211 0.98462 0.93789 0.91053 0.91812 0.91569 0.89387 0.83943 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 19.25 29.55 0.57 -0.78 16 2 C -0.15 -1.55 13.23 -38.84 -0.51 -2.06 16 3 C 0.03 0.30 5.73 -106.87 -0.61 -0.32 16 4 C -0.10 -1.05 9.73 -39.26 -0.38 -1.43 16 5 C -0.06 -0.71 9.58 -39.25 -0.38 -1.09 16 6 C -0.12 -1.45 5.33 -104.91 -0.56 -2.01 16 7 C 0.56 8.04 7.39 -12.40 -0.09 7.95 16 8 O -0.54 -9.35 16.21 5.30 0.09 -9.26 16 9 N -0.60 -8.03 2.98 -174.20 -0.52 -8.55 16 10 C 0.09 1.14 4.72 -3.93 -0.02 1.12 16 11 C -0.12 -1.97 4.60 -26.83 -0.12 -2.10 16 12 C -0.11 -1.68 2.36 -90.58 -0.21 -1.89 16 13 C 0.16 3.05 5.15 -4.04 -0.02 3.03 16 14 N -0.60 -14.36 2.80 -181.12 -0.51 -14.87 16 15 C 0.16 3.90 8.98 59.85 0.54 4.44 16 16 C -0.25 -6.58 8.13 -15.06 -0.12 -6.70 16 17 H 0.07 1.78 6.77 -52.49 -0.36 1.42 16 18 C 0.00 0.02 5.05 -17.43 -0.09 -0.07 16 19 N -0.91 -26.03 10.75 55.49 0.60 -25.43 16 20 Si 0.90 21.29 29.58 -169.99 -5.03 16.26 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 C -0.13 -1.72 5.36 -26.61 -0.14 -1.86 16 25 C 0.11 1.46 6.44 -3.71 -0.02 1.44 16 26 C -0.09 -0.94 7.33 -39.25 -0.29 -1.23 16 27 C -0.10 -1.03 9.73 -39.26 -0.38 -1.41 16 28 H 0.23 0.89 7.80 -54.09 -0.42 0.47 16 29 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 30 H 0.14 1.47 7.97 -52.49 -0.42 1.06 16 31 H 0.09 1.10 4.40 -51.93 -0.23 0.87 16 32 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 33 H 0.10 1.91 5.97 -51.93 -0.31 1.60 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 37 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 38 H 0.03 0.75 7.37 -51.93 -0.38 0.36 16 39 H 0.04 1.01 7.30 -51.93 -0.38 0.63 16 40 H 0.00 -0.07 8.03 -51.93 -0.42 -0.48 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.18 6.99 -51.93 -0.36 0.81 16 46 H 0.14 1.33 5.92 -52.49 -0.31 1.02 16 47 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -31.38 379.56 -9.44 -40.82 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.93 Total: 0.28 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -2.85 Total: -4.98 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.43 Total: -48.85 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.38 -9.44 -40.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753364737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.068 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds