Wall clock time and date at job start Tue Mar 31 2020 14:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39714 * 119.99451 * 74.52985 * 3 2 1 5 5 C 1.37604 * 120.00500 * 179.97438 * 4 3 2 6 6 C 1.39744 * 119.99205 * 359.97359 * 5 4 3 7 7 C 1.47689 * 120.00317 * 179.97438 * 6 5 4 8 8 O 1.21574 * 119.99753 * 326.10952 * 7 6 5 9 9 N 1.34775 * 119.99758 * 145.82495 * 7 6 5 10 10 C 1.46924 * 120.63335 * 354.26792 * 9 7 6 11 11 C 1.52763 * 109.00261 * 233.57946 * 10 9 7 12 12 C 1.53043 * 109.38489 * 305.58118 * 11 10 9 13 13 C 1.52998 * 109.45040 * 181.25488 * 12 11 10 14 14 N 1.46508 * 109.47047 * 64.94000 * 13 12 11 15 15 C 1.46500 * 119.99612 * 89.99794 * 14 13 12 16 16 C 1.36936 * 119.99881 * 270.00326 * 14 13 12 17 17 H 1.07999 * 120.00176 * 21.19107 * 16 14 13 18 18 C 1.38812 * 119.99363 * 201.19083 * 16 14 13 19 19 N 1.31620 * 120.00176 * 15.63953 * 18 16 14 20 20 Si 1.86801 * 119.99838 * 195.63173 * 18 16 14 21 21 H 1.48506 * 109.46740 * 60.00640 * 20 18 16 22 22 H 1.48499 * 109.47352 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47503 * 300.00598 * 20 18 16 24 24 C 1.53041 * 109.53412 * 61.24646 * 12 11 10 25 25 C 1.46930 * 120.62826 * 174.53484 * 9 7 6 26 26 C 1.39744 * 119.99572 * 0.25479 * 6 5 4 27 27 C 1.37600 * 119.99531 * 359.51410 * 26 6 5 28 28 H 4.51952 * 14.06538 * 0.02562 * 4 2 1 29 29 H 1.08003 * 119.99995 * 359.96973 * 4 3 2 30 30 H 1.07994 * 120.00542 * 179.97438 * 5 4 3 31 31 H 1.08996 * 109.58477 * 353.40628 * 10 9 7 32 32 H 1.08993 * 109.59168 * 113.84221 * 10 9 7 33 33 H 1.09003 * 109.56601 * 185.55036 * 11 10 9 34 34 H 1.09000 * 109.39150 * 65.51387 * 11 10 9 35 35 H 1.08990 * 109.46037 * 301.22535 * 12 11 10 36 36 H 1.08994 * 109.47396 * 184.94363 * 13 12 11 37 37 H 1.09005 * 109.47027 * 304.94360 * 13 12 11 38 38 H 1.09003 * 109.46801 * 95.23911 * 15 14 13 39 39 H 1.08997 * 109.47076 * 215.23716 * 15 14 13 40 40 H 1.08995 * 109.47201 * 335.23998 * 15 14 13 41 41 H 0.96999 * 119.99764 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.49745 * 178.68203 * 24 12 11 43 43 H 1.08997 * 109.52962 * 58.60029 * 24 12 11 44 44 H 1.08991 * 109.59256 * 246.16009 * 25 9 7 45 45 H 1.08999 * 109.58727 * 6.44621 * 25 9 7 46 46 H 1.08000 * 120.00538 * 179.74518 * 26 6 5 47 47 H 1.07999 * 120.00063 * 180.23402 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3046 -0.3218 -1.1662 5 6 4.6806 -0.3207 -1.1666 6 6 5.3793 0.0034 -0.0005 7 6 6.8562 0.0041 -0.0005 8 8 7.4643 -0.7952 -0.6855 9 7 7.5296 0.8946 0.7545 10 6 6.8140 1.9500 1.4843 11 6 7.4173 3.3048 1.1180 12 6 8.9258 3.2751 1.3741 13 6 9.5268 4.6412 1.0373 14 7 8.9955 5.6490 1.9585 15 6 9.6892 5.9278 3.2183 16 6 7.8505 6.3301 1.6419 17 1 7.1590 5.9185 0.9217 18 6 7.5788 7.5496 2.2468 19 7 8.5346 8.1993 2.8767 20 14 5.8566 8.2686 2.1668 21 1 4.8983 7.3304 2.8047 22 1 5.8287 9.5680 2.8853 23 1 5.4732 8.4788 0.7476 24 6 9.5731 2.2026 0.4949 25 6 8.9938 0.8319 0.8587 26 6 4.6804 0.3213 1.1671 27 6 3.3044 0.3247 1.1659 28 1 -1.0501 0.0004 -0.0004 29 1 2.7646 -0.5720 -2.0675 30 1 5.2206 -0.5704 -2.0679 31 1 5.7596 1.9345 1.2085 32 1 6.9157 1.7859 2.5570 33 1 6.9602 4.0847 1.7271 34 1 7.2312 3.5107 0.0639 35 1 9.1116 3.0453 2.4232 36 1 10.6113 4.5952 1.1352 37 1 9.2655 4.9108 0.0139 38 1 10.3539 6.7815 3.0858 39 1 8.9574 6.1540 3.9937 40 1 10.2726 5.0554 3.5127 41 1 8.3446 9.0512 3.2997 42 1 10.6504 2.1979 0.6605 43 1 9.3672 2.4180 -0.5536 44 1 9.2770 0.5747 1.8793 45 1 9.3770 0.0770 0.1720 46 1 5.2202 0.5678 2.0695 47 1 2.7642 0.5741 2.0672 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753364737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:16 Heat of formation + Delta-G solvation = 59.696176 kcal Electronic energy + Delta-G solvation = -27417.552394 eV Core-core repulsion = 23760.025294 eV Total energy + Delta-G solvation = -3657.527100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.73629 -39.85279 -38.88342 -37.13883 -35.08423 -34.39582 -32.85172 -32.25234 -31.91772 -31.10517 -28.55717 -27.85914 -25.97049 -24.63335 -24.34464 -23.42190 -22.59214 -21.40050 -20.31456 -19.98880 -18.62714 -18.42765 -17.44566 -16.88549 -16.70727 -16.50214 -15.82599 -15.71902 -15.61710 -15.35813 -15.11547 -14.79507 -14.76177 -14.56065 -14.33929 -14.14599 -13.89295 -13.72789 -13.22535 -13.07396 -12.98174 -12.69018 -12.58764 -12.45270 -12.24517 -12.19213 -12.06938 -12.01368 -11.90921 -11.80442 -11.44823 -11.29512 -11.15198 -10.90725 -10.54962 -10.04330 -9.78146 -9.52328 -8.69452 -7.76333 -5.21450 -0.49392 0.28521 1.43677 1.49153 1.50252 1.56518 1.75021 1.87963 2.18741 2.55484 2.92040 3.25020 3.35835 3.42147 3.70150 3.78465 3.85410 3.90493 4.03328 4.14597 4.21102 4.24163 4.38420 4.42249 4.51043 4.53795 4.59390 4.78245 4.81510 4.88390 4.89213 4.90423 4.93495 5.06484 5.10438 5.14119 5.20012 5.21747 5.27799 5.33603 5.38236 5.44240 5.64662 5.65429 5.71728 5.74631 5.77539 6.31598 6.38692 6.54577 7.01581 7.21957 7.95812 8.39558 9.27048 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010565 B = 0.003611 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.548983 B = 7751.303680 C = 9960.342891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.207 4.207 3 C 0.025 3.975 4 C -0.106 4.106 5 C -0.070 4.070 6 C -0.139 4.139 7 C 0.557 3.443 8 O -0.579 6.579 9 N -0.597 5.597 10 C 0.097 3.903 11 C -0.120 4.120 12 C -0.093 4.093 13 C 0.154 3.846 14 N -0.615 5.615 15 C 0.177 3.823 16 C -0.247 4.247 17 H 0.076 0.924 18 C -0.057 4.057 19 N -0.942 5.942 20 Si 0.957 3.043 21 H -0.275 1.275 22 H -0.300 1.300 23 H -0.280 1.280 24 C -0.118 4.118 25 C 0.114 3.886 26 C -0.086 4.086 27 C -0.106 4.106 28 H 0.261 0.739 29 H 0.150 0.850 30 H 0.136 0.864 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.033 0.967 38 H -0.001 1.001 39 H 0.015 0.985 40 H 0.031 0.969 41 H 0.245 0.755 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.156 0.844 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.820 -18.801 -3.146 21.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.207 4.207 3 C 0.025 3.975 4 C -0.123 4.123 5 C -0.089 4.089 6 C -0.142 4.142 7 C 0.347 3.653 8 O -0.460 6.460 9 N -0.329 5.329 10 C -0.024 4.024 11 C -0.158 4.158 12 C -0.114 4.114 13 C 0.028 3.972 14 N -0.339 5.339 15 C 0.032 3.968 16 C -0.377 4.377 17 H 0.094 0.906 18 C -0.252 4.252 19 N -0.589 5.589 20 Si 0.786 3.214 21 H -0.201 1.201 22 H -0.226 1.226 23 H -0.206 1.206 24 C -0.156 4.156 25 C -0.008 4.008 26 C -0.104 4.104 27 C -0.124 4.124 28 H 0.277 0.723 29 H 0.167 0.833 30 H 0.154 0.846 31 H 0.122 0.878 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.017 0.983 39 H 0.034 0.966 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.108 0.892 43 H 0.072 0.928 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.173 0.827 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.453 -19.043 -3.402 21.988 hybrid contribution -0.618 1.065 -0.015 1.232 sum -11.071 -17.978 -3.417 21.388 Atomic orbital electron populations 1.25858 0.96548 0.96034 0.96653 1.20304 0.92541 1.03977 1.03839 1.16394 0.87541 0.99137 0.94475 1.21321 0.93236 0.99552 0.98228 1.21193 0.94059 0.96135 0.97544 1.20016 0.92219 1.05484 0.96478 1.18593 0.87802 0.80411 0.78534 1.90733 1.70553 1.41646 1.43099 1.48126 1.08050 1.29512 1.47162 1.22346 0.97414 0.85797 0.96845 1.21809 0.96495 0.96542 1.00947 1.21590 0.95060 0.95321 0.99395 1.20921 0.95743 0.88163 0.92363 1.44130 1.28170 1.43198 1.18356 1.20501 0.94353 0.94986 0.86939 1.19493 0.96943 0.99027 1.22211 0.90585 1.25678 1.00576 0.96801 1.02099 1.70246 1.31886 1.15196 1.41622 0.85483 0.81143 0.77178 0.77564 1.20050 1.22609 1.20574 1.21845 1.00897 0.93451 0.99438 1.21688 0.78303 0.98007 1.02755 1.21630 0.94377 0.96429 0.97936 1.21394 0.93572 0.99208 0.98208 0.72250 0.83273 0.84633 0.87827 0.89383 0.90483 0.93748 0.91575 0.93688 0.94870 0.98307 0.96593 0.95030 0.94595 0.89240 0.92811 0.89670 0.89825 0.82686 0.83037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 19.25 74.32 1.43 -0.29 16 2 C -0.21 -3.77 13.23 30.01 0.40 -3.37 16 3 C 0.02 0.49 5.73 -21.32 -0.12 0.37 16 4 C -0.11 -2.05 9.73 22.48 0.22 -1.83 16 5 C -0.07 -1.57 9.58 22.48 0.22 -1.36 16 6 C -0.14 -3.33 5.33 -20.05 -0.11 -3.44 16 7 C 0.56 15.70 7.39 86.74 0.64 16.34 16 8 O -0.58 -19.86 16.21 -3.95 -0.06 -19.92 16 9 N -0.60 -15.16 2.98 -823.33 -2.45 -17.61 16 10 C 0.10 2.32 4.72 86.22 0.41 2.72 16 11 C -0.12 -3.66 4.60 30.53 0.14 -3.52 16 12 C -0.09 -2.80 2.36 -10.77 -0.03 -2.83 16 13 C 0.15 5.87 5.15 86.38 0.44 6.31 16 14 N -0.62 -29.28 2.80 -726.93 -2.04 -31.32 16 15 C 0.18 8.49 8.98 127.77 1.15 9.63 16 16 C -0.25 -12.84 8.13 84.03 0.68 -12.16 16 17 H 0.08 3.81 6.77 -2.91 -0.02 3.79 16 18 C -0.06 -3.12 5.05 84.86 0.43 -2.69 16 19 N -0.94 -55.27 10.75 21.65 0.23 -55.04 16 20 Si 0.96 44.06 29.58 68.60 2.03 46.09 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 22 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 24 C -0.12 -2.95 5.36 30.67 0.16 -2.78 16 25 C 0.11 2.72 6.44 86.36 0.56 3.27 16 26 C -0.09 -1.68 7.33 22.48 0.16 -1.52 16 27 C -0.11 -1.96 9.73 22.48 0.22 -1.74 16 28 H 0.26 0.90 7.80 -4.42 -0.03 0.87 16 29 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 30 H 0.14 2.96 7.97 -2.91 -0.02 2.94 16 31 H 0.10 2.28 4.40 -2.39 -0.01 2.26 16 32 H 0.09 1.82 8.04 -2.39 -0.02 1.80 16 33 H 0.08 2.80 5.97 -2.39 -0.01 2.79 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.04 1.61 8.07 -2.39 -0.02 1.59 16 37 H 0.03 1.33 8.04 -2.38 -0.02 1.31 16 38 H 0.00 -0.07 7.37 -2.39 -0.02 -0.09 16 39 H 0.02 0.80 7.30 -2.39 -0.02 0.79 16 40 H 0.03 1.26 8.03 -2.39 -0.02 1.24 16 41 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.08 2.12 6.99 -2.39 -0.02 2.11 16 46 H 0.16 2.55 5.92 -2.91 -0.02 2.53 16 47 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -68.75 379.56 5.67 -63.08 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.96 Total: 13.59 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 7.00 Total: 1.13 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -4.25 Total: -103.97 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.06 Total: -19.92 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.75 5.67 -63.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753364737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.773 kcal (2) G-P(sol) polarization free energy of solvation -68.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds