Wall clock time and date at job start Tue Mar 31 2020 14:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36938 * 120.00194 * 2 1 4 4 H 1.08001 * 119.99651 * 322.02624 * 3 2 1 5 5 C 1.38806 * 120.00359 * 142.02554 * 3 2 1 6 6 N 1.31618 * 120.00581 * 157.07656 * 5 3 2 7 7 Si 1.86804 * 119.99982 * 337.07649 * 5 3 2 8 8 H 1.48505 * 109.46856 * 95.68468 * 7 5 3 9 9 H 1.48502 * 109.47031 * 215.68469 * 7 5 3 10 10 H 1.48496 * 109.47081 * 335.68776 * 7 5 3 11 11 C 1.46497 * 120.00267 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47214 * 89.99844 * 11 2 1 13 13 N 1.46498 * 109.47514 * 180.02562 * 12 11 2 14 14 C 1.46499 * 120.00019 * 270.00241 * 13 12 11 15 15 C 1.34775 * 120.00333 * 90.00057 * 13 12 11 16 16 O 1.21288 * 119.99793 * 0.02562 * 15 13 12 17 17 C 1.50699 * 120.00574 * 180.02562 * 15 13 12 18 18 C 1.50698 * 109.47377 * 180.02562 * 17 15 13 19 19 C 1.36126 * 120.17289 * 264.72217 * 18 17 15 20 20 C 1.39333 * 120.99522 * 180.32408 * 19 18 17 21 21 C 1.36123 * 120.98603 * 359.92405 * 20 19 18 22 22 C 1.40502 * 119.65147 * 0.04771 * 21 20 19 23 23 C 1.40552 * 121.28199 * 180.02562 * 22 21 20 24 24 C 1.36087 * 119.65340 * 179.97438 * 23 22 21 25 25 C 1.39380 * 120.99389 * 0.02562 * 24 23 22 26 26 C 1.36099 * 120.99435 * 359.95864 * 25 24 23 27 27 C 1.40497 * 120.17343 * 84.99610 * 18 17 15 28 28 H 1.08997 * 109.46788 * 265.66633 * 1 2 3 29 29 H 1.09001 * 109.46777 * 25.66223 * 1 2 3 30 30 H 1.08999 * 109.46862 * 145.66045 * 1 2 3 31 31 H 0.96994 * 120.00757 * 179.97438 * 6 5 3 32 32 H 1.09007 * 109.46817 * 330.00082 * 11 2 1 33 33 H 1.09003 * 109.47575 * 210.00239 * 11 2 1 34 34 H 1.09007 * 109.47034 * 60.00371 * 12 11 2 35 35 H 1.08998 * 109.47434 * 300.00233 * 12 11 2 36 36 H 1.08994 * 109.47623 * 269.99740 * 14 13 12 37 37 H 1.09005 * 109.47154 * 30.00043 * 14 13 12 38 38 H 1.09005 * 109.47041 * 149.99589 * 14 13 12 39 39 H 1.09003 * 109.46841 * 60.00032 * 17 15 13 40 40 H 1.09002 * 109.46809 * 300.00195 * 17 15 13 41 41 H 1.08010 * 119.50401 * 0.27944 * 19 18 17 42 42 H 1.08005 * 119.50509 * 179.97438 * 20 19 18 43 43 H 1.08001 * 120.17381 * 180.02562 * 21 20 19 44 44 H 1.08007 * 120.16898 * 359.95905 * 23 22 21 45 45 H 1.08004 * 119.50306 * 180.02562 * 24 23 22 46 46 H 1.07998 * 119.50541 * 179.97438 * 25 24 23 47 47 H 1.07994 * 120.17385 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7812 2.0222 -0.5755 5 6 3.3174 1.3132 0.7396 6 7 4.2039 2.2312 0.4174 7 14 3.6308 0.1816 2.1925 8 1 4.4691 -0.9638 1.7559 9 1 4.3366 0.9326 3.2616 10 1 2.3357 -0.3236 2.7148 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 7 3.1845 -2.9800 -1.4412 14 6 4.6495 -2.9805 -1.4410 15 6 2.5103 -4.1470 -1.4409 16 8 1.2974 -4.1465 -1.4414 17 6 3.2632 -5.4524 -1.4398 18 6 2.2835 -6.5974 -1.4402 19 6 1.9200 -7.1873 -0.2685 20 6 1.0208 -8.2514 -0.2496 21 6 0.4784 -8.7312 -1.4023 22 6 0.8293 -8.1475 -2.6312 23 6 0.2898 -8.6152 -3.8418 24 6 0.6524 -8.0249 -5.0132 25 6 1.5530 -6.9613 -5.0323 26 6 2.0956 -6.4816 -3.8800 27 6 1.7450 -7.0655 -2.6505 28 1 -0.3633 -0.0777 1.0247 29 1 -0.3633 0.9263 -0.4451 30 1 -0.3633 -0.8486 -0.5797 31 1 5.0196 2.3204 0.9345 32 1 1.6084 -2.0281 0.5148 33 1 3.1500 -1.1381 0.5144 34 1 3.0417 -0.9515 -1.9559 35 1 1.5002 -1.8416 -1.9555 36 1 5.0130 -2.9811 -2.4686 37 1 5.0132 -2.0905 -0.9274 38 1 5.0125 -3.8705 -0.9268 39 1 3.8894 -5.5098 -0.5494 40 1 3.8903 -5.5108 -2.3294 41 1 2.3354 -6.8254 0.6605 42 1 0.7494 -8.7018 0.6938 43 1 -0.2176 -9.5564 -1.3724 44 1 -0.4088 -9.4389 -3.8424 45 1 0.2359 -8.3859 -5.9420 46 1 1.8244 -6.5110 -5.9756 47 1 2.7918 -5.6567 -3.9101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753867448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:50 Heat of formation + Delta-G solvation = 39.692716 kcal Electronic energy + Delta-G solvation = -27555.757394 eV Core-core repulsion = 23897.362879 eV Total energy + Delta-G solvation = -3658.394515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.77190 -39.41958 -36.72054 -36.21280 -34.87135 -33.86941 -31.68536 -30.55553 -30.37971 -29.26219 -27.46815 -26.51221 -25.84126 -23.63727 -23.16764 -23.08427 -21.19344 -20.68564 -18.88053 -17.66225 -17.16501 -16.89682 -16.76433 -16.37535 -15.79283 -15.38097 -15.12999 -14.52407 -14.32280 -14.03251 -13.74800 -13.59336 -13.44751 -13.27441 -13.00068 -12.91202 -12.78037 -12.68610 -12.49788 -12.18353 -12.00473 -11.90968 -11.60275 -11.57362 -11.40721 -11.04045 -10.96656 -10.86198 -10.61057 -10.48484 -10.01968 -9.84086 -9.58095 -9.48569 -8.68688 -8.61377 -8.38612 -7.93990 -6.80710 -6.04383 -3.44599 0.42088 0.94201 1.93729 2.82962 2.88272 3.23764 3.30521 3.42931 3.51787 4.02361 4.35789 4.48761 4.62442 4.69887 4.76818 4.78995 4.88352 5.01729 5.07283 5.11579 5.22257 5.26454 5.27630 5.37589 5.39196 5.41860 5.53836 5.63837 5.77458 5.85109 5.87478 5.99966 6.10810 6.11288 6.13972 6.29885 6.32531 6.38585 6.42865 6.49455 6.54121 6.57439 6.72190 6.74580 6.77409 6.91346 6.96091 7.66505 8.02063 8.34972 8.41826 8.96113 9.67672 10.10903 11.11215 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.018923 B = 0.003061 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.322032 B = 9144.912072 C = 9361.353403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.610 5.610 3 C -0.269 4.269 4 H 0.080 0.920 5 C 0.036 3.964 6 N -0.899 5.899 7 Si 0.877 3.123 8 H -0.287 1.287 9 H -0.301 1.301 10 H -0.271 1.271 11 C 0.130 3.870 12 C 0.098 3.902 13 N -0.612 5.612 14 C 0.074 3.926 15 C 0.509 3.491 16 O -0.530 6.530 17 C -0.107 4.107 18 C -0.045 4.045 19 C -0.107 4.107 20 C -0.110 4.110 21 C -0.112 4.112 22 C -0.051 4.051 23 C -0.108 4.108 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.099 4.099 27 C -0.034 4.034 28 H 0.007 0.993 29 H 0.046 0.954 30 H 0.030 0.970 31 H 0.263 0.737 32 H 0.040 0.960 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.934 -23.629 -7.432 24.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.335 5.335 3 C -0.398 4.398 4 H 0.098 0.902 5 C -0.164 4.164 6 N -0.540 5.540 7 Si 0.707 3.293 8 H -0.215 1.215 9 H -0.229 1.229 10 H -0.196 1.196 11 C 0.003 3.997 12 C -0.026 4.026 13 N -0.346 5.346 14 C -0.070 4.070 15 C 0.296 3.704 16 O -0.406 6.406 17 C -0.146 4.146 18 C -0.046 4.046 19 C -0.125 4.125 20 C -0.128 4.128 21 C -0.130 4.130 22 C -0.051 4.051 23 C -0.126 4.126 24 C -0.136 4.136 25 C -0.137 4.137 26 C -0.117 4.117 27 C -0.034 4.034 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.460 -23.484 -7.391 24.663 hybrid contribution 0.439 -0.404 0.935 1.110 sum -1.021 -23.889 -6.455 24.767 Atomic orbital electron populations 1.21108 0.84258 0.99216 0.97548 1.44002 1.00989 1.01793 1.86690 1.18846 1.05995 0.90814 1.24123 0.90249 1.25474 0.96897 0.96450 0.97623 1.69881 1.08503 1.36154 1.39434 0.86943 0.77966 0.79847 0.84532 1.21494 1.22851 1.19572 1.21416 0.96395 0.87900 0.93948 1.22363 0.96912 0.82385 1.00972 1.48027 1.06984 1.06638 1.72940 1.21857 0.79884 1.03508 1.01738 1.20378 0.88138 0.84842 0.77046 1.90722 1.13654 1.87157 1.49095 1.20774 0.97714 0.91007 1.05132 1.19135 0.97326 0.95326 0.92792 1.20706 0.98082 0.96297 0.97452 1.20790 0.97031 0.96696 0.98314 1.20974 1.00132 1.00108 0.91742 1.18048 0.97130 0.95924 0.93976 1.20991 0.99807 1.00069 0.91764 1.20826 0.98096 0.96608 0.98090 1.20833 0.97581 0.97007 0.98303 1.21031 0.99901 0.99025 0.91782 1.17847 0.96837 0.95516 0.93223 0.97508 0.93563 0.95104 0.92709 0.94183 0.92926 0.89860 0.90623 0.92510 0.90251 0.91482 0.87836 0.87981 0.86029 0.85946 0.85729 0.85736 0.86130 0.86067 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.67 10.70 59.85 0.64 3.31 16 2 N -0.61 -15.13 2.47 -181.12 -0.45 -15.57 16 3 C -0.27 -7.56 9.88 -15.06 -0.15 -7.71 16 4 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 5 C 0.04 1.03 5.29 -17.43 -0.09 0.94 16 6 N -0.90 -26.85 13.97 55.49 0.78 -26.07 16 7 Si 0.88 22.23 25.10 -169.99 -4.27 17.96 16 8 H -0.29 -6.86 6.68 56.52 0.38 -6.49 16 9 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 10 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 11 C 0.13 2.95 4.86 -4.05 -0.02 2.93 16 12 C 0.10 1.93 5.73 -4.04 -0.02 1.90 16 13 N -0.61 -9.96 2.87 -181.57 -0.52 -10.48 16 14 C 0.07 0.92 10.24 59.85 0.61 1.54 16 15 C 0.51 8.20 7.67 -10.99 -0.08 8.11 16 16 O -0.53 -10.64 15.61 5.55 0.09 -10.56 16 17 C -0.11 -1.25 3.78 -29.04 -0.11 -1.36 16 18 C -0.05 -0.59 4.38 -104.53 -0.46 -1.04 16 19 C -0.11 -1.29 9.57 -39.93 -0.38 -1.67 16 20 C -0.11 -1.19 9.95 -39.93 -0.40 -1.59 16 21 C -0.11 -1.20 9.77 -39.49 -0.39 -1.58 16 22 C -0.05 -0.62 5.74 -106.83 -0.61 -1.23 16 23 C -0.11 -1.12 9.77 -39.48 -0.39 -1.50 16 24 C -0.12 -1.16 9.95 -39.93 -0.40 -1.56 16 25 C -0.12 -1.26 9.95 -39.93 -0.40 -1.66 16 26 C -0.10 -1.21 9.28 -39.48 -0.37 -1.58 16 27 C -0.03 -0.45 5.74 -106.83 -0.61 -1.07 16 28 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.05 0.95 8.00 -51.93 -0.42 0.54 16 30 H 0.03 0.61 8.10 -51.93 -0.42 0.19 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.05 1.26 3.37 -51.93 -0.18 1.08 16 34 H 0.08 1.70 8.07 -51.93 -0.42 1.28 16 35 H 0.08 1.56 7.42 -51.93 -0.39 1.18 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 38 H 0.07 0.65 6.44 -51.93 -0.33 0.31 16 39 H 0.10 1.00 7.30 -51.93 -0.38 0.62 16 40 H 0.10 0.96 6.68 -51.93 -0.35 0.62 16 41 H 0.12 1.28 8.05 -52.48 -0.42 0.86 16 42 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 44 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 45 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 47 H 0.12 1.37 6.49 -52.49 -0.34 1.03 16 LS Contribution 382.17 15.07 5.76 5.76 Total: -1.00 -34.30 382.17 -9.25 -43.56 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -7.02 Total: 0.22 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -3.62 Total: -4.82 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.19 Total: -52.12 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.27 Total: 17.96 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.30 -9.25 -43.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753867448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.249 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds