Wall clock time and date at job start Tue Mar 31 2020 14:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36938 * 120.00194 * 2 1 4 4 H 1.08001 * 119.99651 * 322.02624 * 3 2 1 5 5 C 1.38806 * 120.00359 * 142.02554 * 3 2 1 6 6 N 1.31618 * 120.00581 * 157.07656 * 5 3 2 7 7 Si 1.86804 * 119.99982 * 337.07649 * 5 3 2 8 8 H 1.48505 * 109.46856 * 95.68468 * 7 5 3 9 9 H 1.48502 * 109.47031 * 215.68469 * 7 5 3 10 10 H 1.48496 * 109.47081 * 335.68776 * 7 5 3 11 11 C 1.46497 * 120.00267 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47214 * 89.99844 * 11 2 1 13 13 N 1.46498 * 109.47514 * 180.02562 * 12 11 2 14 14 C 1.46499 * 120.00019 * 270.00241 * 13 12 11 15 15 C 1.34775 * 120.00333 * 90.00057 * 13 12 11 16 16 O 1.21288 * 119.99793 * 0.02562 * 15 13 12 17 17 C 1.50699 * 120.00574 * 180.02562 * 15 13 12 18 18 C 1.50698 * 109.47377 * 180.02562 * 17 15 13 19 19 C 1.36126 * 120.17289 * 264.72217 * 18 17 15 20 20 C 1.39333 * 120.99522 * 180.32408 * 19 18 17 21 21 C 1.36123 * 120.98603 * 359.92405 * 20 19 18 22 22 C 1.40502 * 119.65147 * 0.04771 * 21 20 19 23 23 C 1.40552 * 121.28199 * 180.02562 * 22 21 20 24 24 C 1.36087 * 119.65340 * 179.97438 * 23 22 21 25 25 C 1.39380 * 120.99389 * 0.02562 * 24 23 22 26 26 C 1.36099 * 120.99435 * 359.95864 * 25 24 23 27 27 C 1.40497 * 120.17343 * 84.99610 * 18 17 15 28 28 H 1.08997 * 109.46788 * 265.66633 * 1 2 3 29 29 H 1.09001 * 109.46777 * 25.66223 * 1 2 3 30 30 H 1.08999 * 109.46862 * 145.66045 * 1 2 3 31 31 H 0.96994 * 120.00757 * 179.97438 * 6 5 3 32 32 H 1.09007 * 109.46817 * 330.00082 * 11 2 1 33 33 H 1.09003 * 109.47575 * 210.00239 * 11 2 1 34 34 H 1.09007 * 109.47034 * 60.00371 * 12 11 2 35 35 H 1.08998 * 109.47434 * 300.00233 * 12 11 2 36 36 H 1.08994 * 109.47623 * 269.99740 * 14 13 12 37 37 H 1.09005 * 109.47154 * 30.00043 * 14 13 12 38 38 H 1.09005 * 109.47041 * 149.99589 * 14 13 12 39 39 H 1.09003 * 109.46841 * 60.00032 * 17 15 13 40 40 H 1.09002 * 109.46809 * 300.00195 * 17 15 13 41 41 H 1.08010 * 119.50401 * 0.27944 * 19 18 17 42 42 H 1.08005 * 119.50509 * 179.97438 * 20 19 18 43 43 H 1.08001 * 120.17381 * 180.02562 * 21 20 19 44 44 H 1.08007 * 120.16898 * 359.95905 * 23 22 21 45 45 H 1.08004 * 119.50306 * 180.02562 * 24 23 22 46 46 H 1.07998 * 119.50541 * 179.97438 * 25 24 23 47 47 H 1.07994 * 120.17385 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7812 2.0222 -0.5755 5 6 3.3174 1.3132 0.7396 6 7 4.2039 2.2312 0.4174 7 14 3.6308 0.1816 2.1925 8 1 4.4691 -0.9638 1.7559 9 1 4.3366 0.9326 3.2616 10 1 2.3357 -0.3236 2.7148 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 7 3.1845 -2.9800 -1.4412 14 6 4.6495 -2.9805 -1.4410 15 6 2.5103 -4.1470 -1.4409 16 8 1.2974 -4.1465 -1.4414 17 6 3.2632 -5.4524 -1.4398 18 6 2.2835 -6.5974 -1.4402 19 6 1.9200 -7.1873 -0.2685 20 6 1.0208 -8.2514 -0.2496 21 6 0.4784 -8.7312 -1.4023 22 6 0.8293 -8.1475 -2.6312 23 6 0.2898 -8.6152 -3.8418 24 6 0.6524 -8.0249 -5.0132 25 6 1.5530 -6.9613 -5.0323 26 6 2.0956 -6.4816 -3.8800 27 6 1.7450 -7.0655 -2.6505 28 1 -0.3633 -0.0777 1.0247 29 1 -0.3633 0.9263 -0.4451 30 1 -0.3633 -0.8486 -0.5797 31 1 5.0196 2.3204 0.9345 32 1 1.6084 -2.0281 0.5148 33 1 3.1500 -1.1381 0.5144 34 1 3.0417 -0.9515 -1.9559 35 1 1.5002 -1.8416 -1.9555 36 1 5.0130 -2.9811 -2.4686 37 1 5.0132 -2.0905 -0.9274 38 1 5.0125 -3.8705 -0.9268 39 1 3.8894 -5.5098 -0.5494 40 1 3.8903 -5.5108 -2.3294 41 1 2.3354 -6.8254 0.6605 42 1 0.7494 -8.7018 0.6938 43 1 -0.2176 -9.5564 -1.3724 44 1 -0.4088 -9.4389 -3.8424 45 1 0.2359 -8.3859 -5.9420 46 1 1.8244 -6.5110 -5.9756 47 1 2.7918 -5.6567 -3.9101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753867448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:49 Heat of formation + Delta-G solvation = 20.790829 kcal Electronic energy + Delta-G solvation = -27556.577041 eV Core-core repulsion = 23897.362879 eV Total energy + Delta-G solvation = -3659.214162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.67920 -40.59430 -38.10719 -37.38655 -36.34893 -34.76341 -33.80951 -31.62598 -31.17791 -30.54514 -28.48622 -28.16411 -27.38340 -25.04609 -24.16829 -23.88143 -22.84023 -21.93501 -20.07672 -18.86519 -18.45256 -18.16740 -17.93748 -17.36237 -17.17843 -16.90475 -16.47613 -15.78655 -15.41676 -15.19464 -15.14238 -14.87142 -14.55261 -14.49309 -14.32099 -14.23345 -14.06025 -13.92081 -13.58896 -13.55880 -13.39190 -13.14557 -12.87769 -12.78711 -12.73945 -12.51157 -12.38227 -12.21000 -11.89628 -11.80334 -11.64608 -11.50943 -11.02465 -10.69347 -10.64577 -9.80784 -9.50025 -8.80796 -8.74882 -8.24880 -5.63995 -0.38625 0.12531 1.10128 1.22794 1.37190 1.48918 1.61691 1.96495 2.17807 2.36953 3.01461 3.17425 3.41839 3.51891 3.71627 3.83533 3.93656 4.02341 4.09173 4.13160 4.23653 4.31778 4.32019 4.35346 4.45736 4.49412 4.51214 4.59648 4.64983 4.65700 4.68793 4.78857 4.86993 4.87574 4.91401 5.01786 5.06082 5.07782 5.23160 5.32598 5.36595 5.46811 5.52944 5.63460 5.72162 5.89450 5.94169 6.11904 6.13927 6.43491 6.90020 7.17518 7.54616 7.99933 8.94502 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.018923 B = 0.003061 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.322032 B = 9144.912072 C = 9361.353403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.624 5.624 3 C -0.267 4.267 4 H 0.046 0.954 5 C -0.008 4.008 6 N -0.938 5.938 7 Si 0.936 3.064 8 H -0.263 1.263 9 H -0.302 1.302 10 H -0.276 1.276 11 C 0.134 3.866 12 C 0.114 3.886 13 N -0.615 5.615 14 C 0.068 3.932 15 C 0.508 3.492 16 O -0.575 6.575 17 C -0.096 4.096 18 C -0.069 4.069 19 C -0.119 4.119 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.076 4.076 23 C -0.113 4.113 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.124 4.124 27 C -0.057 4.057 28 H 0.013 0.987 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.266 0.734 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.132 0.868 42 H 0.146 0.854 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.148 0.852 46 H 0.140 0.860 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.613 -26.581 -7.390 27.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.349 5.349 3 C -0.397 4.397 4 H 0.064 0.936 5 C -0.206 4.206 6 N -0.581 5.581 7 Si 0.764 3.236 8 H -0.189 1.189 9 H -0.230 1.230 10 H -0.202 1.202 11 C 0.008 3.992 12 C -0.012 4.012 13 N -0.348 5.348 14 C -0.074 4.074 15 C 0.298 3.702 16 O -0.455 6.455 17 C -0.135 4.135 18 C -0.069 4.069 19 C -0.137 4.137 20 C -0.140 4.140 21 C -0.131 4.131 22 C -0.076 4.076 23 C -0.131 4.131 24 C -0.143 4.143 25 C -0.141 4.141 26 C -0.142 4.142 27 C -0.058 4.058 28 H 0.031 0.969 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.150 0.850 42 H 0.164 0.836 43 H 0.168 0.832 44 H 0.168 0.832 45 H 0.166 0.834 46 H 0.158 0.842 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.115 -26.473 -7.358 27.499 hybrid contribution 0.250 0.498 0.828 0.998 sum -0.865 -25.975 -6.531 26.797 Atomic orbital electron populations 1.21165 0.82574 1.00089 0.98194 1.44139 1.02229 1.01517 1.87063 1.18703 1.06182 0.91323 1.23469 0.93587 1.25972 0.96745 0.98280 0.99581 1.69975 1.09230 1.38337 1.40595 0.85986 0.77809 0.78809 0.80977 1.18917 1.23003 1.20152 1.21386 0.95478 0.86817 0.95526 1.21838 0.96684 0.84028 0.98608 1.48077 1.08471 1.05439 1.72861 1.22115 0.77398 1.04282 1.03648 1.21126 0.87812 0.85834 0.75457 1.90695 1.15873 1.87831 1.51069 1.20783 0.97442 0.87817 1.07440 1.19320 0.98354 0.96092 0.93147 1.21011 0.98304 0.96687 0.97683 1.21116 0.96819 0.96577 0.99502 1.21337 1.00089 1.00458 0.91262 1.18440 0.97565 0.96265 0.95378 1.21352 0.99831 1.00585 0.91285 1.21192 0.97689 0.96173 0.99217 1.21176 0.97196 0.97044 0.98679 1.21183 1.00995 0.99753 0.92222 1.18147 0.97556 0.96287 0.93761 0.96852 0.93265 0.93588 0.92454 0.94191 0.93939 0.91089 0.91946 0.90122 0.92179 0.87944 0.85261 0.85606 0.84990 0.83629 0.83155 0.83199 0.83418 0.84222 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.34 10.70 127.77 1.37 6.70 16 2 N -0.62 -31.05 2.47 -726.95 -1.79 -32.85 16 3 C -0.27 -15.30 9.88 84.03 0.83 -14.47 16 4 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 5 C -0.01 -0.47 5.29 84.86 0.45 -0.02 16 6 N -0.94 -56.91 13.97 21.65 0.30 -56.60 16 7 Si 0.94 45.74 25.10 68.60 1.72 47.46 16 8 H -0.26 -11.72 6.68 99.48 0.66 -11.05 16 9 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 10 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 11 C 0.13 6.01 4.86 86.38 0.42 6.42 16 12 C 0.11 4.49 5.73 86.38 0.50 4.98 16 13 N -0.62 -19.22 2.87 -846.76 -2.43 -21.66 16 14 C 0.07 1.53 10.24 127.77 1.31 2.84 16 15 C 0.51 15.75 7.67 87.66 0.67 16.42 16 16 O -0.58 -23.05 15.61 -3.06 -0.05 -23.09 16 17 C -0.10 -2.04 3.78 29.10 0.11 -1.93 16 18 C -0.07 -1.70 4.38 -19.81 -0.09 -1.78 16 19 C -0.12 -2.69 9.57 22.04 0.21 -2.48 16 20 C -0.12 -2.43 9.95 22.04 0.22 -2.21 16 21 C -0.11 -2.24 9.77 22.33 0.22 -2.02 16 22 C -0.08 -1.77 5.74 -21.29 -0.12 -1.90 16 23 C -0.11 -2.10 9.77 22.33 0.22 -1.89 16 24 C -0.12 -2.20 9.95 22.04 0.22 -1.98 16 25 C -0.12 -2.44 9.95 22.05 0.22 -2.22 16 26 C -0.12 -2.91 9.28 22.34 0.21 -2.70 16 27 C -0.06 -1.48 5.74 -21.30 -0.12 -1.60 16 28 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 2.04 8.00 -2.39 -0.02 2.02 16 30 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 31 H 0.27 15.18 8.31 -92.71 -0.77 14.40 16 32 H 0.04 1.78 8.07 -2.38 -0.02 1.76 16 33 H 0.04 1.99 3.37 -2.39 -0.01 1.98 16 34 H 0.07 2.95 8.07 -2.38 -0.02 2.93 16 35 H 0.06 2.61 7.42 -2.39 -0.02 2.60 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 1.62 8.07 -2.38 -0.02 1.60 16 38 H 0.10 1.59 6.44 -2.38 -0.02 1.57 16 39 H 0.13 2.05 7.30 -2.39 -0.02 2.03 16 40 H 0.13 2.05 6.68 -2.39 -0.02 2.03 16 41 H 0.13 2.55 8.05 -2.91 -0.02 2.52 16 42 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 43 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 45 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 46 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 47 H 0.12 2.69 6.49 -2.91 -0.02 2.67 16 Total: -1.00 -75.76 382.17 5.50 -70.26 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.91 Total: 16.31 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 6.83 Total: 0.16 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -3.93 Total: -111.11 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.05 Total: -23.09 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.72 Total: 47.46 kcal Total: -75.76 5.50 -70.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753867448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.054 kcal (2) G-P(sol) polarization free energy of solvation -75.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds