Wall clock time and date at job start Tue Mar 31 2020 14:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 111.00429 * 2 1 4 4 C 1.52994 * 109.47194 * 293.95762 * 3 2 1 5 5 C 1.53790 * 113.61246 * 272.49645 * 4 3 2 6 6 C 1.53782 * 87.07868 * 220.01590 * 5 4 3 7 7 C 1.53777 * 113.61905 * 174.99864 * 4 3 2 8 8 C 1.46904 * 110.99746 * 123.95397 * 2 1 3 9 9 C 1.53008 * 109.46879 * 66.04610 * 8 2 1 10 10 H 1.08995 * 109.99470 * 295.35021 * 9 8 2 11 11 C 1.54329 * 109.88005 * 174.26059 * 9 8 2 12 12 C 1.55155 * 102.94001 * 218.38847 * 11 9 8 13 13 C 1.54694 * 101.67910 * 35.33751 * 12 11 9 14 14 N 1.47019 * 109.88283 * 56.45537 * 9 8 2 15 15 C 1.34777 * 125.64379 * 298.31416 * 14 9 8 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 9 17 17 C 1.50700 * 119.99675 * 179.72980 * 15 14 9 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 14 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99674 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00584 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47157 * 59.99781 * 23 21 19 25 25 H 1.48496 * 109.47271 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46802 * 300.00045 * 23 21 19 27 27 H 1.09007 * 109.46995 * 296.04701 * 1 2 3 28 28 H 1.08997 * 109.46941 * 56.03870 * 1 2 3 29 29 H 1.08995 * 109.47113 * 176.04576 * 1 2 3 30 30 H 1.09001 * 109.46714 * 53.95245 * 3 2 1 31 31 H 1.09000 * 109.47219 * 173.95219 * 3 2 1 32 32 H 1.08998 * 112.85201 * 43.79667 * 4 3 2 33 33 H 1.09002 * 113.61181 * 334.56549 * 5 4 3 34 34 H 1.08999 * 113.61355 * 105.47030 * 5 4 3 35 35 H 1.08995 * 113.61689 * 270.88025 * 6 5 4 36 36 H 1.09006 * 113.68839 * 139.98938 * 6 5 4 37 37 H 1.09004 * 113.61407 * 254.53172 * 7 4 3 38 38 H 1.09008 * 113.61226 * 25.34545 * 7 4 3 39 39 H 1.08994 * 109.47617 * 306.04671 * 8 2 1 40 40 H 1.09001 * 109.47262 * 186.04062 * 8 2 1 41 41 H 1.09001 * 110.71688 * 336.75105 * 11 9 8 42 42 H 1.08998 * 110.72073 * 99.84404 * 11 9 8 43 43 H 1.08998 * 111.00362 * 153.57724 * 12 11 9 44 44 H 1.08994 * 111.00466 * 277.38720 * 12 11 9 45 45 H 1.08994 * 110.39028 * 204.36619 * 13 12 11 46 46 H 1.08990 * 110.23738 * 82.10810 * 13 12 11 47 47 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 48 48 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 49 49 H 0.97003 * 120.00297 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6316 2.0574 -1.3182 5 6 2.6575 1.8215 -2.4392 6 6 2.4516 3.2944 -2.8302 7 6 2.0319 3.5412 -1.3715 8 6 1.9954 -0.7660 1.1376 9 6 1.6314 -2.2427 0.9703 10 1 0.5494 -2.3670 1.0137 11 6 2.3006 -3.0775 2.0825 12 6 2.7191 -4.3739 1.3398 13 6 3.1044 -3.8255 -0.0544 14 7 2.1409 -2.7407 -0.3157 15 6 1.7820 -2.2849 -1.5323 16 8 0.9724 -1.3871 -1.6290 17 6 2.3918 -2.8865 -2.7722 18 16 1.7188 -2.0623 -4.2363 19 6 2.5783 -2.9364 -5.5018 20 1 3.2751 -3.7190 -5.2399 21 6 2.3593 -2.6201 -6.8355 22 7 1.5090 -1.6674 -7.1548 23 14 3.2700 -3.5474 -8.1771 24 1 2.9391 -4.9925 -8.0922 25 1 2.8616 -3.0238 -9.5054 26 1 4.7329 -3.3633 -8.0004 27 1 -0.3633 0.4513 0.9234 28 1 -0.3633 0.5741 -0.8523 29 1 -0.3633 -1.0252 -0.0709 30 1 1.5612 1.9273 0.8309 31 1 3.0798 1.3443 0.1083 32 1 0.6012 1.8720 -1.6214 33 1 3.6610 1.6028 -2.0739 34 1 2.3197 1.1167 -3.1990 35 1 1.6458 3.4471 -3.5482 36 1 3.3722 3.8055 -3.1121 37 1 1.1890 4.2248 -1.2693 38 1 2.8634 3.7931 -0.7132 39 1 1.5611 -0.3874 2.0628 40 1 3.0797 -0.6613 1.1757 41 1 3.1747 -2.5610 2.4792 42 1 1.5903 -3.2984 2.8792 43 1 3.5735 -4.8443 1.8263 44 1 1.8828 -5.0690 1.2657 45 1 3.0102 -4.6063 -0.8090 46 1 4.1213 -3.4336 -0.0376 47 1 3.4735 -2.7545 -2.7460 48 1 2.1565 -3.9500 -2.8136 49 1 1.3561 -1.4461 -8.0868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755190558.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:36 Heat of formation + Delta-G solvation = 14.440975 kcal Electronic energy + Delta-G solvation = -27316.449510 eV Core-core repulsion = 23792.403949 eV Total energy + Delta-G solvation = -3524.045561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.96703 -38.63753 -36.85978 -36.04998 -32.35218 -31.59060 -30.55578 -28.48287 -27.85748 -26.34217 -25.39933 -25.15369 -23.89513 -22.29601 -21.04680 -20.73137 -18.96936 -18.59380 -17.53688 -16.62973 -16.36478 -15.50195 -15.10260 -14.92485 -14.74092 -14.53328 -14.17581 -14.07896 -13.67637 -13.57265 -13.36940 -12.85620 -12.73873 -12.59983 -12.23568 -12.05663 -11.99689 -11.73491 -11.46608 -11.38400 -11.26669 -11.22348 -11.13804 -10.98866 -10.94105 -10.77953 -10.70876 -10.69930 -10.04869 -9.77466 -9.76384 -9.70607 -8.98338 -8.71587 -8.30306 -8.10037 -7.50147 -6.36761 -6.14269 -3.81760 3.13132 3.27341 3.31374 3.35030 3.54073 3.80591 4.13435 4.29192 4.49056 4.64962 4.76876 4.97787 5.05399 5.08048 5.14369 5.20737 5.28413 5.31134 5.33234 5.38229 5.51028 5.56371 5.60471 5.62986 5.73489 5.74433 5.75952 5.78669 5.82429 5.91560 5.98005 6.01515 6.08116 6.11081 6.13066 6.18911 6.20698 6.27647 6.32709 6.57148 6.68651 6.77852 6.83292 6.97841 7.48542 7.55024 7.66504 8.09107 8.42431 9.07890 9.31387 10.92828 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009746 B = 0.004847 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.343986 B = 5774.866747 C = 8068.372739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.500 5.500 3 C 0.068 3.932 4 C -0.097 4.097 5 C -0.122 4.122 6 C -0.144 4.144 7 C -0.140 4.140 8 C 0.047 3.953 9 C 0.144 3.856 10 H 0.069 0.931 11 C -0.127 4.127 12 C -0.132 4.132 13 C 0.102 3.898 14 N -0.618 5.618 15 C 0.544 3.456 16 O -0.464 6.464 17 C -0.144 4.144 18 S -0.053 6.053 19 C -0.535 4.535 20 H 0.069 0.931 21 C 0.075 3.925 22 N -0.868 5.868 23 Si 0.914 3.086 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.275 1.275 27 H -0.006 1.006 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.019 0.981 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.030 0.970 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.539 1.370 19.560 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.223 5.223 3 C -0.060 4.060 4 C -0.115 4.115 5 C -0.159 4.159 6 C -0.181 4.181 7 C -0.178 4.178 8 C -0.083 4.083 9 C 0.040 3.960 10 H 0.087 0.913 11 C -0.165 4.165 12 C -0.170 4.170 13 C -0.022 4.022 14 N -0.357 5.357 15 C 0.331 3.669 16 O -0.333 6.333 17 C -0.295 4.295 18 S 0.174 5.826 19 C -0.683 4.683 20 H 0.087 0.913 21 C -0.134 4.134 22 N -0.504 5.504 23 Si 0.740 3.260 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.200 1.200 27 H 0.012 0.988 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.352 2.640 18.712 18.946 hybrid contribution 1.466 -1.332 0.026 1.981 sum 2.819 1.307 18.738 18.994 Atomic orbital electron populations 1.22182 0.86922 1.02167 0.97770 1.62274 1.08453 1.11800 1.39809 1.22105 0.99007 0.88823 0.96047 1.22462 1.00566 0.93440 0.95040 1.22792 0.98283 0.96067 0.98770 1.22809 1.01081 0.98211 0.96036 1.22969 1.00503 0.96788 0.97507 1.22569 0.99956 0.93718 0.92039 1.21491 0.98242 0.92540 0.83740 0.91315 1.22652 1.00902 0.95985 0.97001 1.22714 1.01825 0.97086 0.95367 1.22147 0.93122 0.90182 0.96720 1.48412 1.45057 1.37510 1.04716 1.19668 0.82658 0.82514 0.82081 1.90732 1.31762 1.26296 1.84536 1.23501 1.03570 1.03648 0.98747 1.85222 1.57031 1.48450 0.91937 1.22858 1.29319 1.23216 0.92898 0.91329 1.24937 0.95325 0.95281 0.97872 1.70008 1.33158 1.28669 1.18545 0.86299 0.79832 0.79776 0.80045 1.20046 1.20886 1.20027 0.98807 0.91331 0.91139 0.96335 0.91863 0.88964 0.91271 0.89608 0.90389 0.92216 0.92326 0.90926 0.95241 0.91306 0.90712 0.90465 0.90209 0.90750 0.90791 0.92066 0.90238 0.90369 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 7.18 60.07 0.43 1.30 16 2 N -0.50 -7.48 2.11 -242.92 -0.51 -8.00 16 3 C 0.07 0.95 4.79 -3.83 -0.02 0.93 16 4 C -0.10 -1.44 3.71 -89.81 -0.33 -1.77 16 5 C -0.12 -2.03 7.63 -25.91 -0.20 -2.23 16 6 C -0.14 -2.06 8.08 -25.92 -0.21 -2.27 16 7 C -0.14 -1.78 7.64 -25.92 -0.20 -1.98 16 8 C 0.05 0.58 4.55 -3.82 -0.02 0.56 16 9 C 0.14 1.73 2.89 -66.95 -0.19 1.54 16 10 H 0.07 0.90 6.81 -51.93 -0.35 0.54 16 11 C -0.13 -1.07 6.48 -24.89 -0.16 -1.23 16 12 C -0.13 -1.09 7.07 -24.70 -0.17 -1.27 16 13 C 0.10 1.15 6.68 -2.65 -0.02 1.13 16 14 N -0.62 -8.90 3.07 -163.16 -0.50 -9.40 16 15 C 0.54 10.16 7.43 -10.98 -0.08 10.08 16 16 O -0.46 -9.54 9.95 5.55 0.06 -9.48 16 17 C -0.14 -2.99 5.17 36.01 0.19 -2.80 16 18 S -0.05 -1.42 20.57 -107.50 -2.21 -3.64 16 19 C -0.53 -15.32 9.50 30.94 0.29 -15.02 16 20 H 0.07 1.88 7.80 -52.48 -0.41 1.48 16 21 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 22 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 23 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.01 -0.09 8.14 -51.92 -0.42 -0.51 16 28 H 0.07 1.14 6.15 -51.93 -0.32 0.82 16 29 H 0.07 1.15 5.46 -51.93 -0.28 0.86 16 30 H 0.02 0.24 8.12 -51.93 -0.42 -0.18 16 31 H 0.06 0.87 7.63 -51.93 -0.40 0.48 16 32 H 0.09 1.53 6.20 -51.93 -0.32 1.21 16 33 H 0.07 1.12 7.90 -51.93 -0.41 0.71 16 34 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.85 8.10 -51.92 -0.42 0.43 16 39 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 40 H 0.07 0.85 7.85 -51.93 -0.41 0.44 16 41 H 0.07 0.57 7.79 -51.93 -0.40 0.17 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.85 7.49 -51.93 -0.39 0.46 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 1.61 8.14 -51.91 -0.42 1.19 16 48 H 0.08 1.56 7.85 -51.92 -0.41 1.15 16 49 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -31.75 387.10 -11.14 -42.89 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -8.73 Total: 1.61 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -0.79 Total: -10.99 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: -0.28 Total: -42.83 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.06 Total: -9.48 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.21 Total: -3.64 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.75 -11.14 -42.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755190558.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.336 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds