Wall clock time and date at job start Tue Mar 31 2020 14:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 111.00429 * 2 1 4 4 C 1.52994 * 109.47194 * 293.95762 * 3 2 1 5 5 C 1.53790 * 113.61246 * 272.49645 * 4 3 2 6 6 C 1.53782 * 87.07868 * 220.01590 * 5 4 3 7 7 C 1.53777 * 113.61905 * 174.99864 * 4 3 2 8 8 C 1.46904 * 110.99746 * 123.95397 * 2 1 3 9 9 C 1.53008 * 109.46879 * 66.04610 * 8 2 1 10 10 H 1.08995 * 109.99470 * 295.35021 * 9 8 2 11 11 C 1.54329 * 109.88005 * 174.26059 * 9 8 2 12 12 C 1.55155 * 102.94001 * 218.38847 * 11 9 8 13 13 C 1.54694 * 101.67910 * 35.33751 * 12 11 9 14 14 N 1.47019 * 109.88283 * 56.45537 * 9 8 2 15 15 C 1.34777 * 125.64379 * 298.31416 * 14 9 8 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 9 17 17 C 1.50700 * 119.99675 * 179.72980 * 15 14 9 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 14 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99674 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00584 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47157 * 59.99781 * 23 21 19 25 25 H 1.48496 * 109.47271 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46802 * 300.00045 * 23 21 19 27 27 H 1.09007 * 109.46995 * 296.04701 * 1 2 3 28 28 H 1.08997 * 109.46941 * 56.03870 * 1 2 3 29 29 H 1.08995 * 109.47113 * 176.04576 * 1 2 3 30 30 H 1.09001 * 109.46714 * 53.95245 * 3 2 1 31 31 H 1.09000 * 109.47219 * 173.95219 * 3 2 1 32 32 H 1.08998 * 112.85201 * 43.79667 * 4 3 2 33 33 H 1.09002 * 113.61181 * 334.56549 * 5 4 3 34 34 H 1.08999 * 113.61355 * 105.47030 * 5 4 3 35 35 H 1.08995 * 113.61689 * 270.88025 * 6 5 4 36 36 H 1.09006 * 113.68839 * 139.98938 * 6 5 4 37 37 H 1.09004 * 113.61407 * 254.53172 * 7 4 3 38 38 H 1.09008 * 113.61226 * 25.34545 * 7 4 3 39 39 H 1.08994 * 109.47617 * 306.04671 * 8 2 1 40 40 H 1.09001 * 109.47262 * 186.04062 * 8 2 1 41 41 H 1.09001 * 110.71688 * 336.75105 * 11 9 8 42 42 H 1.08998 * 110.72073 * 99.84404 * 11 9 8 43 43 H 1.08998 * 111.00362 * 153.57724 * 12 11 9 44 44 H 1.08994 * 111.00466 * 277.38720 * 12 11 9 45 45 H 1.08994 * 110.39028 * 204.36619 * 13 12 11 46 46 H 1.08990 * 110.23738 * 82.10810 * 13 12 11 47 47 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 48 48 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 49 49 H 0.97003 * 120.00297 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6316 2.0574 -1.3182 5 6 2.6575 1.8215 -2.4392 6 6 2.4516 3.2944 -2.8302 7 6 2.0319 3.5412 -1.3715 8 6 1.9954 -0.7660 1.1376 9 6 1.6314 -2.2427 0.9703 10 1 0.5494 -2.3670 1.0137 11 6 2.3006 -3.0775 2.0825 12 6 2.7191 -4.3739 1.3398 13 6 3.1044 -3.8255 -0.0544 14 7 2.1409 -2.7407 -0.3157 15 6 1.7820 -2.2849 -1.5323 16 8 0.9724 -1.3871 -1.6290 17 6 2.3918 -2.8865 -2.7722 18 16 1.7188 -2.0623 -4.2363 19 6 2.5783 -2.9364 -5.5018 20 1 3.2751 -3.7190 -5.2399 21 6 2.3593 -2.6201 -6.8355 22 7 1.5090 -1.6674 -7.1548 23 14 3.2700 -3.5474 -8.1771 24 1 2.9391 -4.9925 -8.0922 25 1 2.8616 -3.0238 -9.5054 26 1 4.7329 -3.3633 -8.0004 27 1 -0.3633 0.4513 0.9234 28 1 -0.3633 0.5741 -0.8523 29 1 -0.3633 -1.0252 -0.0709 30 1 1.5612 1.9273 0.8309 31 1 3.0798 1.3443 0.1083 32 1 0.6012 1.8720 -1.6214 33 1 3.6610 1.6028 -2.0739 34 1 2.3197 1.1167 -3.1990 35 1 1.6458 3.4471 -3.5482 36 1 3.3722 3.8055 -3.1121 37 1 1.1890 4.2248 -1.2693 38 1 2.8634 3.7931 -0.7132 39 1 1.5611 -0.3874 2.0628 40 1 3.0797 -0.6613 1.1757 41 1 3.1747 -2.5610 2.4792 42 1 1.5903 -3.2984 2.8792 43 1 3.5735 -4.8443 1.8263 44 1 1.8828 -5.0690 1.2657 45 1 3.0102 -4.6063 -0.8090 46 1 4.1213 -3.4336 -0.0376 47 1 3.4735 -2.7545 -2.7460 48 1 2.1565 -3.9500 -2.8136 49 1 1.3561 -1.4461 -8.0868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755190558.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:35 Heat of formation + Delta-G solvation = -2.829542 kcal Electronic energy + Delta-G solvation = -27317.198416 eV Core-core repulsion = 23792.403949 eV Total energy + Delta-G solvation = -3524.794467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.11056 -39.83559 -38.14167 -37.15488 -34.55602 -32.77832 -31.51148 -30.00189 -29.00942 -27.63136 -27.38458 -26.36793 -24.98318 -23.39075 -21.98496 -21.82036 -20.19718 -20.05883 -19.26821 -17.94154 -17.47681 -16.85778 -16.70439 -16.36783 -16.05867 -15.97446 -15.69092 -15.35032 -15.06836 -14.63528 -14.52334 -14.25034 -13.97016 -13.82734 -13.46457 -13.25195 -13.24379 -13.05363 -13.01270 -12.86325 -12.68495 -12.60749 -12.51062 -12.22490 -12.20039 -12.01052 -11.86270 -11.67042 -11.51790 -11.26597 -11.10950 -11.00151 -10.93642 -10.20190 -10.15987 -9.46518 -8.62278 -8.55332 -8.31625 -6.05831 1.29947 1.42016 1.47357 1.61076 2.06195 2.28188 2.40291 3.01582 3.09492 3.36956 3.70228 3.75853 3.82533 3.88323 3.95343 3.98127 4.10464 4.14891 4.28789 4.36531 4.39582 4.43904 4.53905 4.56813 4.57467 4.61500 4.66996 4.70372 4.82974 4.84522 4.88071 4.93500 4.94177 5.01456 5.05488 5.08449 5.14577 5.19184 5.32755 5.36393 5.41199 5.42620 5.48639 5.68738 5.72105 6.21264 6.41181 6.45163 6.80007 7.09553 7.66454 8.76696 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009746 B = 0.004847 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.343986 B = 5774.866747 C = 8068.372739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.525 5.525 3 C 0.074 3.926 4 C -0.097 4.097 5 C -0.128 4.128 6 C -0.143 4.143 7 C -0.118 4.118 8 C 0.049 3.951 9 C 0.139 3.861 10 H 0.056 0.944 11 C -0.115 4.115 12 C -0.120 4.120 13 C 0.091 3.909 14 N -0.614 5.614 15 C 0.540 3.460 16 O -0.490 6.490 17 C -0.119 4.119 18 S -0.125 6.125 19 C -0.551 4.551 20 H 0.073 0.927 21 C 0.018 3.982 22 N -0.909 5.909 23 Si 0.991 3.009 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.264 1.264 27 H 0.013 0.987 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.031 0.969 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.350 0.613 22.154 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.249 5.249 3 C -0.053 4.053 4 C -0.115 4.115 5 C -0.166 4.166 6 C -0.180 4.180 7 C -0.156 4.156 8 C -0.080 4.080 9 C 0.035 3.965 10 H 0.074 0.926 11 C -0.153 4.153 12 C -0.158 4.158 13 C -0.032 4.032 14 N -0.351 5.351 15 C 0.326 3.674 16 O -0.362 6.362 17 C -0.271 4.271 18 S 0.102 5.898 19 C -0.699 4.699 20 H 0.091 0.909 21 C -0.187 4.187 22 N -0.546 5.546 23 Si 0.813 3.187 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.189 1.189 27 H 0.031 0.969 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.126 0.874 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.179 1.857 21.357 21.672 hybrid contribution 0.903 -1.142 -0.707 1.618 sum 4.083 0.716 20.651 21.063 Atomic orbital electron populations 1.21923 0.87491 1.00744 0.97450 1.62166 1.08174 1.12728 1.41804 1.22034 0.99203 0.88512 0.95584 1.22395 0.98526 0.95555 0.95049 1.22741 0.98853 0.96463 0.98526 1.22799 1.01477 0.96351 0.97403 1.22865 1.01528 0.95112 0.96088 1.22604 1.00105 0.93458 0.91838 1.21739 0.98005 0.93206 0.83539 0.92567 1.22656 1.01643 0.95097 0.95898 1.22700 1.02936 0.97015 0.93155 1.22438 0.92806 0.89191 0.98751 1.48303 1.44887 1.37741 1.04169 1.19282 0.82714 0.82525 0.82907 1.90743 1.32912 1.27426 1.85136 1.23314 1.03380 1.03254 0.97136 1.85356 1.58473 1.50411 0.95563 1.23192 1.29535 1.23411 0.93744 0.90863 1.26017 0.96082 0.96104 1.00531 1.70171 1.34810 1.30388 1.19191 0.85110 0.78611 0.78533 0.76416 1.18802 1.20207 1.18873 0.96927 0.93943 0.92780 0.94689 0.91402 0.91456 0.90939 0.94991 0.91485 0.90762 0.90900 0.88748 0.93275 0.90888 0.89145 0.88335 0.87372 0.90728 0.91373 0.91182 0.89839 0.89603 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.23 7.18 127.69 0.92 3.15 16 2 N -0.52 -15.66 2.11 -922.45 -1.95 -17.61 16 3 C 0.07 2.01 4.79 86.30 0.41 2.43 16 4 C -0.10 -2.95 3.71 -10.27 -0.04 -2.99 16 5 C -0.13 -4.54 7.63 31.12 0.24 -4.30 16 6 C -0.14 -4.17 8.08 31.12 0.25 -3.92 16 7 C -0.12 -2.87 7.64 31.12 0.24 -2.63 16 8 C 0.05 1.11 4.55 86.30 0.39 1.50 16 9 C 0.14 3.08 2.89 45.35 0.13 3.21 16 10 H 0.06 1.41 6.81 -2.39 -0.02 1.39 16 11 C -0.11 -1.48 6.48 31.78 0.21 -1.27 16 12 C -0.12 -1.56 7.07 31.91 0.23 -1.33 16 13 C 0.09 1.86 6.68 86.78 0.58 2.44 16 14 N -0.61 -17.20 3.07 -788.49 -2.42 -19.62 16 15 C 0.54 20.75 7.43 87.66 0.65 21.40 16 16 O -0.49 -21.27 9.95 -3.04 -0.03 -21.30 16 17 C -0.12 -5.13 5.17 71.24 0.37 -4.76 16 18 S -0.13 -7.09 20.57 -56.49 -1.16 -8.25 16 19 C -0.55 -32.51 9.50 67.95 0.65 -31.86 16 20 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 21 C 0.02 1.02 5.49 84.86 0.47 1.49 16 22 N -0.91 -56.75 13.22 21.65 0.29 -56.47 16 23 Si 0.99 44.79 29.55 68.60 2.03 46.82 16 24 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 27 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 28 H 0.04 1.51 6.15 -2.39 -0.01 1.50 16 29 H 0.05 1.83 5.46 -2.39 -0.01 1.82 16 30 H 0.04 0.84 8.12 -2.39 -0.02 0.82 16 31 H 0.07 1.77 7.63 -2.39 -0.02 1.75 16 32 H 0.07 2.40 6.20 -2.39 -0.01 2.39 16 33 H 0.07 2.45 7.90 -2.39 -0.02 2.43 16 34 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.09 1.92 8.10 -2.38 -0.02 1.90 16 39 H 0.05 0.95 8.12 -2.39 -0.02 0.93 16 40 H 0.07 1.61 7.85 -2.39 -0.02 1.59 16 41 H 0.09 0.95 7.79 -2.39 -0.02 0.93 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.07 1.48 7.49 -2.39 -0.02 1.46 16 46 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 48 H 0.09 3.50 7.85 -2.40 -0.02 3.48 16 49 H 0.27 15.70 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -73.73 387.10 3.35 -70.38 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.90 Total: 23.50 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 5.69 Total: -17.46 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -4.08 Total: -93.69 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.03 Total: -21.30 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: -7.09 SS G_CDS: -1.16 Total: -8.25 kcal Total: -73.73 3.35 -70.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755190558.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.551 kcal (2) G-P(sol) polarization free energy of solvation -73.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds