Wall clock time and date at job start Tue Mar 31 2020 14:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00209 * 2 1 4 4 C 1.53000 * 109.46790 * 66.04862 * 3 2 1 5 5 C 1.53781 * 113.61392 * 274.13205 * 4 3 2 6 6 C 1.53959 * 87.02139 * 220.04747 * 5 4 3 7 7 C 1.53782 * 113.61364 * 176.52559 * 4 3 2 8 8 C 1.46903 * 110.99637 * 236.04729 * 2 1 3 9 9 C 1.52992 * 109.47222 * 293.95434 * 8 2 1 10 10 H 1.09000 * 109.99989 * 64.65173 * 9 8 2 11 11 C 1.54383 * 109.90151 * 185.70507 * 9 8 2 12 12 C 1.55158 * 102.91824 * 141.57782 * 11 9 8 13 13 C 1.54909 * 101.61642 * 324.54893 * 12 11 9 14 14 N 1.47016 * 109.88719 * 303.54825 * 9 8 2 15 15 C 1.34774 * 125.64624 * 61.67276 * 14 9 8 16 16 O 1.21282 * 120.00096 * 359.97438 * 15 14 9 17 17 C 1.50703 * 119.99909 * 179.97438 * 15 14 9 18 18 S 1.81002 * 109.47234 * 180.02562 * 17 15 14 19 19 C 1.76200 * 100.00249 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99642 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00002 * 180.02562 * 19 18 17 22 22 N 1.31630 * 119.99751 * 180.02562 * 21 19 18 23 23 Si 1.86792 * 120.00167 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47200 * 90.00053 * 23 21 19 25 25 H 1.48492 * 109.47435 * 210.00228 * 23 21 19 26 26 H 1.48502 * 109.47468 * 330.00706 * 23 21 19 27 27 H 1.08994 * 109.47623 * 183.94832 * 1 2 3 28 28 H 1.08997 * 109.47019 * 303.95435 * 1 2 3 29 29 H 1.09003 * 109.46680 * 63.94939 * 1 2 3 30 30 H 1.09000 * 109.46945 * 186.04223 * 3 2 1 31 31 H 1.08993 * 109.47274 * 306.04754 * 3 2 1 32 32 H 1.09000 * 112.85189 * 45.33250 * 4 3 2 33 33 H 1.09001 * 113.61841 * 334.57398 * 5 4 3 34 34 H 1.09010 * 113.61196 * 105.47265 * 5 4 3 35 35 H 1.08992 * 113.54043 * 270.81177 * 6 5 4 36 36 H 1.08999 * 113.73842 * 139.94260 * 6 5 4 37 37 H 1.08995 * 113.62001 * 254.53027 * 7 4 3 38 38 H 1.08998 * 113.61225 * 25.43432 * 7 4 3 39 39 H 1.09009 * 109.46881 * 173.95257 * 8 2 1 40 40 H 1.09004 * 109.47051 * 53.95882 * 8 2 1 41 41 H 1.08999 * 110.70275 * 23.23566 * 11 9 8 42 42 H 1.08993 * 110.75646 * 259.94792 * 11 9 8 43 43 H 1.09002 * 111.00366 * 206.45412 * 12 11 9 44 44 H 1.09002 * 111.00429 * 82.64474 * 12 11 9 45 45 H 1.09000 * 110.36449 * 155.82966 * 13 12 11 46 46 H 1.09002 * 110.36898 * 278.14897 * 13 12 11 47 47 H 1.09006 * 109.46865 * 299.99965 * 17 15 14 48 48 H 1.08994 * 109.47167 * 60.00324 * 17 15 14 49 49 H 0.97000 * 119.99767 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 1.3183 5 6 0.2389 2.7094 1.3095 6 6 0.8690 3.8771 2.0902 7 6 2.2108 3.4753 1.4554 8 6 1.9954 -0.7660 -1.1376 9 6 1.6314 -2.2425 -0.9705 10 1 0.5494 -2.3670 -1.0139 11 6 2.2999 -3.0779 -2.0834 12 6 2.7191 -4.3737 -1.3401 13 6 3.1085 -3.8217 0.0539 14 7 2.1408 -2.7407 0.3155 15 6 1.7821 -2.2850 1.5321 16 8 0.9727 -1.3870 1.6288 17 6 2.3867 -2.8913 2.7722 18 16 1.7085 -2.0719 4.2367 19 6 2.5616 -2.9520 5.5025 20 1 3.2591 -3.7339 5.2404 21 6 2.3372 -2.6406 6.8363 22 7 2.9749 -3.2978 7.7819 23 14 1.1313 -1.2880 7.2896 24 1 -0.2253 -1.8690 7.4546 25 1 1.5558 -0.6525 8.5628 26 1 1.1046 -0.2669 6.2116 27 1 -0.3634 -1.0251 0.0708 28 1 -0.3633 0.5740 0.8524 29 1 -0.3633 0.4513 -0.9233 30 1 3.0798 1.3443 -0.1082 31 1 1.5612 1.9273 -0.8308 32 1 1.8125 1.4258 2.1881 33 1 -0.1074 2.9862 0.3137 34 1 -0.5068 2.1542 1.8788 35 1 0.8402 3.7436 3.1716 36 1 0.5133 4.8581 1.7753 37 1 3.0548 3.5377 2.1422 38 1 2.4047 3.9619 0.4995 39 1 3.0797 -0.6611 -1.1757 40 1 1.5611 -0.3871 -2.0629 41 1 3.1737 -2.5614 -2.4807 42 1 1.5886 -3.3021 -2.8782 43 1 3.5735 -4.8442 -1.8266 44 1 1.8830 -5.0691 -1.2654 45 1 3.0188 -4.6021 0.8096 46 1 4.1238 -3.4256 0.0351 47 1 2.1503 -3.9547 2.8091 48 1 3.4685 -2.7601 2.7504 49 1 2.8178 -3.0805 8.7141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755190559.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:39 Heat of formation + Delta-G solvation = 14.217098 kcal Electronic energy + Delta-G solvation = -27231.859134 eV Core-core repulsion = 23707.803865 eV Total energy + Delta-G solvation = -3524.055269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.07728 -38.91137 -36.97403 -36.05975 -32.37647 -31.69041 -30.59609 -28.62842 -28.12160 -26.50007 -25.54219 -25.27232 -24.02726 -22.41156 -21.12799 -20.79632 -19.22472 -18.67458 -17.54902 -16.73627 -16.40958 -15.87974 -15.39957 -14.94658 -14.76233 -14.64217 -14.33002 -14.12620 -13.72784 -13.66748 -13.36975 -12.91307 -12.79879 -12.66112 -12.52005 -12.31011 -12.14920 -11.85879 -11.63797 -11.45905 -11.40815 -11.34083 -11.18454 -11.09310 -11.03597 -10.96052 -10.76820 -10.46546 -10.36220 -9.99432 -9.86145 -9.79706 -8.94286 -8.85128 -8.40984 -8.38141 -7.60662 -6.80163 -6.22972 -3.92032 2.87566 3.31915 3.37057 3.42190 3.54237 3.74013 4.06375 4.38168 4.43424 4.58463 4.72084 4.77213 4.85203 4.88735 4.91561 4.98781 5.07030 5.16410 5.23656 5.29751 5.37157 5.48768 5.53623 5.56690 5.59065 5.59748 5.69637 5.72945 5.74677 5.75955 5.83361 5.88454 5.92241 5.97783 5.99570 6.03439 6.12047 6.16498 6.19400 6.20720 6.41563 6.53781 6.68791 6.76886 7.40418 7.48129 7.97430 8.00761 8.48307 8.93636 9.23920 10.86622 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008892 B = 0.005333 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.174224 B = 5248.658442 C = 7878.229658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.502 5.502 3 C 0.068 3.932 4 C -0.098 4.098 5 C -0.136 4.136 6 C -0.142 4.142 7 C -0.138 4.138 8 C 0.046 3.954 9 C 0.145 3.855 10 H 0.069 0.931 11 C -0.127 4.127 12 C -0.132 4.132 13 C 0.100 3.900 14 N -0.616 5.616 15 C 0.542 3.458 16 O -0.467 6.467 17 C -0.114 4.114 18 S -0.139 6.139 19 C -0.519 4.519 20 H 0.085 0.915 21 C 0.095 3.905 22 N -0.883 5.883 23 Si 0.857 3.143 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.235 1.235 27 H 0.067 0.933 28 H 0.074 0.926 29 H -0.007 1.007 30 H 0.064 0.936 31 H 0.020 0.980 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.030 0.970 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.317 5.442 -21.893 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.225 5.225 3 C -0.060 4.060 4 C -0.116 4.116 5 C -0.173 4.173 6 C -0.180 4.180 7 C -0.176 4.176 8 C -0.084 4.084 9 C 0.040 3.960 10 H 0.087 0.913 11 C -0.166 4.166 12 C -0.170 4.170 13 C -0.023 4.023 14 N -0.355 5.355 15 C 0.329 3.671 16 O -0.337 6.337 17 C -0.265 4.265 18 S 0.087 5.913 19 C -0.667 4.667 20 H 0.104 0.896 21 C -0.113 4.113 22 N -0.521 5.521 23 Si 0.682 3.318 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.159 1.159 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.011 0.989 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.105 0.895 48 H 0.106 0.894 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.375 6.575 -21.005 22.138 hybrid contribution 0.449 -0.315 -0.421 0.691 sum -1.927 6.261 -21.427 22.406 Atomic orbital electron populations 1.22286 0.86827 1.02111 0.98159 1.62313 1.08635 1.11686 1.39889 1.22076 0.99136 0.88956 0.95842 1.22521 0.95492 0.94494 0.99111 1.23045 0.97369 0.97142 0.99793 1.22823 0.96959 0.97999 1.00184 1.22916 0.97313 0.96943 1.00477 1.22578 1.00023 0.93683 0.92091 1.21508 0.98284 0.92545 0.83632 0.91261 1.22667 1.00931 0.95988 0.96968 1.22755 1.01890 0.97054 0.95279 1.22237 0.93031 0.90165 0.96895 1.48359 1.44815 1.37661 1.04662 1.19645 0.82656 0.82559 0.82212 1.90734 1.31884 1.26493 1.84628 1.23246 1.03667 1.03322 0.96256 1.84640 1.59439 1.50577 0.96624 1.22365 1.29334 1.23134 0.91832 0.89648 1.24704 0.95400 0.95998 0.95226 1.69947 1.41313 1.40496 1.00297 0.86730 0.81687 0.83529 0.79861 1.19372 1.20158 1.15862 0.91393 0.90704 0.98887 0.91785 0.96147 0.87398 0.91127 0.91210 0.90121 0.92131 0.91571 0.90886 0.91210 0.95165 0.90633 0.90405 0.90115 0.90676 0.90617 0.91840 0.89546 0.89416 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.77 6.88 60.07 0.41 1.19 16 2 N -0.50 -7.17 2.11 -242.92 -0.51 -7.68 16 3 C 0.07 0.89 4.87 -3.82 -0.02 0.88 16 4 C -0.10 -1.36 3.50 -89.81 -0.31 -1.67 16 5 C -0.14 -1.73 5.83 -25.82 -0.15 -1.88 16 6 C -0.14 -1.68 8.09 -25.82 -0.21 -1.89 16 7 C -0.14 -1.65 7.65 -25.91 -0.20 -1.84 16 8 C 0.05 0.54 4.55 -3.83 -0.02 0.52 16 9 C 0.14 1.66 2.89 -66.93 -0.19 1.46 16 10 H 0.07 0.86 6.81 -51.93 -0.35 0.51 16 11 C -0.13 -1.01 6.48 -24.86 -0.16 -1.17 16 12 C -0.13 -1.04 7.08 -24.58 -0.17 -1.22 16 13 C 0.10 1.08 6.69 -2.53 -0.02 1.06 16 14 N -0.62 -8.49 3.06 -162.99 -0.50 -8.99 16 15 C 0.54 9.70 7.44 -10.99 -0.08 9.62 16 16 O -0.47 -9.20 9.95 5.56 0.06 -9.14 16 17 C -0.11 -2.29 5.16 36.01 0.19 -2.10 16 18 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 19 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 20 H 0.09 2.62 8.03 -52.48 -0.42 2.19 16 21 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.99 13.97 55.49 0.78 -26.22 16 23 Si 0.86 22.01 27.74 -169.99 -4.71 17.29 16 24 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.23 -5.98 6.74 56.52 0.38 -5.60 16 27 H 0.07 1.06 5.46 -51.93 -0.28 0.78 16 28 H 0.07 1.17 4.98 -51.93 -0.26 0.91 16 29 H -0.01 -0.09 8.14 -51.93 -0.42 -0.52 16 30 H 0.06 0.83 7.93 -51.93 -0.41 0.42 16 31 H 0.02 0.25 7.85 -51.93 -0.41 -0.16 16 32 H 0.11 1.91 8.14 -51.93 -0.42 1.48 16 33 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16 34 H 0.07 0.97 7.21 -51.92 -0.37 0.60 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.07 0.82 7.85 -51.92 -0.41 0.41 16 40 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 41 H 0.07 0.55 7.79 -51.93 -0.40 0.14 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.84 7.48 -51.93 -0.39 0.45 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.09 1.67 7.85 -51.91 -0.41 1.26 16 48 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 49 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -31.99 382.08 -10.61 -42.60 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.76 Total: 1.04 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -0.72 Total: -9.15 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -0.24 Total: -42.88 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.06 Total: -9.14 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.29 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.99 -10.61 -42.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755190559.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.819 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds