Wall clock time and date at job start Tue Mar 31 2020 14:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00209 * 2 1 4 4 C 1.53000 * 109.46790 * 66.04862 * 3 2 1 5 5 C 1.53781 * 113.61392 * 274.13205 * 4 3 2 6 6 C 1.53959 * 87.02139 * 220.04747 * 5 4 3 7 7 C 1.53782 * 113.61364 * 176.52559 * 4 3 2 8 8 C 1.46903 * 110.99637 * 236.04729 * 2 1 3 9 9 C 1.52992 * 109.47222 * 293.95434 * 8 2 1 10 10 H 1.09000 * 109.99989 * 64.65173 * 9 8 2 11 11 C 1.54383 * 109.90151 * 185.70507 * 9 8 2 12 12 C 1.55158 * 102.91824 * 141.57782 * 11 9 8 13 13 C 1.54909 * 101.61642 * 324.54893 * 12 11 9 14 14 N 1.47016 * 109.88719 * 303.54825 * 9 8 2 15 15 C 1.34774 * 125.64624 * 61.67276 * 14 9 8 16 16 O 1.21282 * 120.00096 * 359.97438 * 15 14 9 17 17 C 1.50703 * 119.99909 * 179.97438 * 15 14 9 18 18 S 1.81002 * 109.47234 * 180.02562 * 17 15 14 19 19 C 1.76200 * 100.00249 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99642 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00002 * 180.02562 * 19 18 17 22 22 N 1.31630 * 119.99751 * 180.02562 * 21 19 18 23 23 Si 1.86792 * 120.00167 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47200 * 90.00053 * 23 21 19 25 25 H 1.48492 * 109.47435 * 210.00228 * 23 21 19 26 26 H 1.48502 * 109.47468 * 330.00706 * 23 21 19 27 27 H 1.08994 * 109.47623 * 183.94832 * 1 2 3 28 28 H 1.08997 * 109.47019 * 303.95435 * 1 2 3 29 29 H 1.09003 * 109.46680 * 63.94939 * 1 2 3 30 30 H 1.09000 * 109.46945 * 186.04223 * 3 2 1 31 31 H 1.08993 * 109.47274 * 306.04754 * 3 2 1 32 32 H 1.09000 * 112.85189 * 45.33250 * 4 3 2 33 33 H 1.09001 * 113.61841 * 334.57398 * 5 4 3 34 34 H 1.09010 * 113.61196 * 105.47265 * 5 4 3 35 35 H 1.08992 * 113.54043 * 270.81177 * 6 5 4 36 36 H 1.08999 * 113.73842 * 139.94260 * 6 5 4 37 37 H 1.08995 * 113.62001 * 254.53027 * 7 4 3 38 38 H 1.08998 * 113.61225 * 25.43432 * 7 4 3 39 39 H 1.09009 * 109.46881 * 173.95257 * 8 2 1 40 40 H 1.09004 * 109.47051 * 53.95882 * 8 2 1 41 41 H 1.08999 * 110.70275 * 23.23566 * 11 9 8 42 42 H 1.08993 * 110.75646 * 259.94792 * 11 9 8 43 43 H 1.09002 * 111.00366 * 206.45412 * 12 11 9 44 44 H 1.09002 * 111.00429 * 82.64474 * 12 11 9 45 45 H 1.09000 * 110.36449 * 155.82966 * 13 12 11 46 46 H 1.09002 * 110.36898 * 278.14897 * 13 12 11 47 47 H 1.09006 * 109.46865 * 299.99965 * 17 15 14 48 48 H 1.08994 * 109.47167 * 60.00324 * 17 15 14 49 49 H 0.97000 * 119.99767 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 1.3183 5 6 0.2389 2.7094 1.3095 6 6 0.8690 3.8771 2.0902 7 6 2.2108 3.4753 1.4554 8 6 1.9954 -0.7660 -1.1376 9 6 1.6314 -2.2425 -0.9705 10 1 0.5494 -2.3670 -1.0139 11 6 2.2999 -3.0779 -2.0834 12 6 2.7191 -4.3737 -1.3401 13 6 3.1085 -3.8217 0.0539 14 7 2.1408 -2.7407 0.3155 15 6 1.7821 -2.2850 1.5321 16 8 0.9727 -1.3870 1.6288 17 6 2.3867 -2.8913 2.7722 18 16 1.7085 -2.0719 4.2367 19 6 2.5616 -2.9520 5.5025 20 1 3.2591 -3.7339 5.2404 21 6 2.3372 -2.6406 6.8363 22 7 2.9749 -3.2978 7.7819 23 14 1.1313 -1.2880 7.2896 24 1 -0.2253 -1.8690 7.4546 25 1 1.5558 -0.6525 8.5628 26 1 1.1046 -0.2669 6.2116 27 1 -0.3634 -1.0251 0.0708 28 1 -0.3633 0.5740 0.8524 29 1 -0.3633 0.4513 -0.9233 30 1 3.0798 1.3443 -0.1082 31 1 1.5612 1.9273 -0.8308 32 1 1.8125 1.4258 2.1881 33 1 -0.1074 2.9862 0.3137 34 1 -0.5068 2.1542 1.8788 35 1 0.8402 3.7436 3.1716 36 1 0.5133 4.8581 1.7753 37 1 3.0548 3.5377 2.1422 38 1 2.4047 3.9619 0.4995 39 1 3.0797 -0.6611 -1.1757 40 1 1.5611 -0.3871 -2.0629 41 1 3.1737 -2.5614 -2.4807 42 1 1.5886 -3.3021 -2.8782 43 1 3.5735 -4.8442 -1.8266 44 1 1.8830 -5.0691 -1.2654 45 1 3.0188 -4.6021 0.8096 46 1 4.1238 -3.4256 0.0351 47 1 2.1503 -3.9547 2.8091 48 1 3.4685 -2.7601 2.7504 49 1 2.8178 -3.0805 8.7141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755190559.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:38 Heat of formation + Delta-G solvation = -3.462113 kcal Electronic energy + Delta-G solvation = -27232.625762 eV Core-core repulsion = 23707.803865 eV Total energy + Delta-G solvation = -3524.821897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16747 -39.95478 -38.19159 -37.06958 -34.66501 -32.82964 -31.49740 -30.08007 -29.17784 -27.83754 -27.46358 -26.26829 -25.02220 -23.42689 -22.01564 -21.80665 -20.30014 -20.09626 -19.30086 -17.99688 -17.49250 -17.09920 -16.93564 -16.48008 -16.05680 -15.79353 -15.72036 -15.37411 -15.13787 -14.87080 -14.62521 -14.30432 -13.92067 -13.76791 -13.59769 -13.35349 -13.28548 -13.21568 -13.09719 -12.95392 -12.80609 -12.60818 -12.48476 -12.31196 -12.08951 -12.00416 -11.92960 -11.85470 -11.52897 -11.39123 -11.16469 -11.02336 -10.85558 -10.46968 -10.26545 -9.51605 -8.92915 -8.65640 -8.51017 -6.18820 1.03070 1.30021 1.47087 1.58954 1.98198 2.24620 2.32203 2.75363 2.87350 3.10535 3.63622 3.74816 3.77089 3.85436 3.91419 3.94284 4.02486 4.07483 4.24349 4.33316 4.34675 4.45366 4.48890 4.52280 4.58356 4.63542 4.68131 4.70131 4.81801 4.82182 4.84410 4.90382 4.92947 5.00701 5.04655 5.09158 5.13433 5.15691 5.18752 5.35754 5.40082 5.44215 5.65769 5.68531 5.71380 6.11312 6.40947 6.44462 6.74250 6.94592 7.57482 8.62007 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008892 B = 0.005333 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.174224 B = 5248.658442 C = 7878.229658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.526 5.526 3 C 0.074 3.926 4 C -0.105 4.105 5 C -0.130 4.130 6 C -0.140 4.140 7 C -0.129 4.129 8 C 0.048 3.952 9 C 0.140 3.860 10 H 0.058 0.942 11 C -0.115 4.115 12 C -0.121 4.121 13 C 0.089 3.911 14 N -0.612 5.612 15 C 0.541 3.459 16 O -0.491 6.491 17 C -0.100 4.100 18 S -0.159 6.159 19 C -0.531 4.531 20 H 0.055 0.945 21 C 0.046 3.954 22 N -0.920 5.920 23 Si 0.916 3.084 24 H -0.263 1.263 25 H -0.260 1.260 26 H -0.236 1.236 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.009 0.991 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.412 6.337 -24.932 25.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.250 5.250 3 C -0.053 4.053 4 C -0.124 4.124 5 C -0.167 4.167 6 C -0.177 4.177 7 C -0.166 4.166 8 C -0.081 4.081 9 C 0.036 3.964 10 H 0.077 0.923 11 C -0.153 4.153 12 C -0.159 4.159 13 C -0.033 4.033 14 N -0.349 5.349 15 C 0.326 3.674 16 O -0.363 6.363 17 C -0.252 4.252 18 S 0.068 5.932 19 C -0.678 4.678 20 H 0.073 0.927 21 C -0.159 4.159 22 N -0.558 5.558 23 Si 0.738 3.262 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.160 1.160 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.027 0.973 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.125 0.875 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.110 0.890 48 H 0.108 0.892 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.446 7.443 -24.079 25.321 hybrid contribution 0.547 -0.702 0.426 0.987 sum -1.899 6.740 -23.653 24.668 Atomic orbital electron populations 1.22048 0.87223 1.00756 0.98009 1.62218 1.08488 1.12607 1.41696 1.22008 0.99103 0.88638 0.95593 1.22405 0.96993 0.95068 0.97899 1.23000 0.96164 0.97069 1.00485 1.22805 0.96865 0.98708 0.99345 1.22895 0.97002 0.95346 1.01396 1.22606 1.00118 0.93434 0.91961 1.21749 0.98088 0.93178 0.83357 0.92350 1.22673 1.01659 0.95073 0.95937 1.22741 1.02935 0.97043 0.93134 1.22515 0.92751 0.89244 0.98839 1.48267 1.44603 1.37804 1.04185 1.19207 0.82717 0.82557 0.82880 1.90745 1.32931 1.27481 1.85146 1.23210 1.03601 1.03166 0.95179 1.84507 1.59547 1.51063 0.98119 1.22533 1.29065 1.22767 0.93462 0.92687 1.25551 0.97024 0.98137 0.95169 1.70027 1.42769 1.42073 1.00955 0.85848 0.79618 0.80786 0.79983 1.18730 1.18433 1.16032 0.93080 0.92651 0.97282 0.91771 0.94596 0.92052 0.89456 0.93254 0.91486 0.89985 0.92126 0.88663 0.90933 0.93324 0.89155 0.88301 0.87474 0.90638 0.91316 0.91038 0.88982 0.89205 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.92 6.88 127.69 0.88 2.80 16 2 N -0.53 -14.64 2.11 -922.46 -1.95 -16.58 16 3 C 0.07 1.87 4.87 86.30 0.42 2.29 16 4 C -0.10 -2.93 3.50 -10.27 -0.04 -2.97 16 5 C -0.13 -3.25 5.83 31.18 0.18 -3.07 16 6 C -0.14 -3.18 8.09 31.18 0.25 -2.93 16 7 C -0.13 -2.91 7.65 31.12 0.24 -2.67 16 8 C 0.05 1.02 4.55 86.30 0.39 1.41 16 9 C 0.14 2.90 2.89 45.36 0.13 3.04 16 10 H 0.06 1.37 6.81 -2.39 -0.02 1.35 16 11 C -0.12 -1.39 6.48 31.80 0.21 -1.18 16 12 C -0.12 -1.49 7.08 31.99 0.23 -1.27 16 13 C 0.09 1.76 6.69 86.86 0.58 2.34 16 14 N -0.61 -16.19 3.06 -787.97 -2.41 -18.60 16 15 C 0.54 19.47 7.44 87.66 0.65 20.13 16 16 O -0.49 -19.72 9.95 -3.03 -0.03 -19.75 16 17 C -0.10 -4.11 5.16 71.24 0.37 -3.74 16 18 S -0.16 -8.25 18.55 -56.49 -1.05 -9.29 16 19 C -0.53 -31.93 10.04 67.95 0.68 -31.25 16 20 H 0.05 3.53 8.03 -2.91 -0.02 3.50 16 21 C 0.05 2.78 5.50 84.86 0.47 3.25 16 22 N -0.92 -57.35 13.97 21.65 0.30 -57.05 16 23 Si 0.92 46.16 27.74 68.60 1.90 48.07 16 24 H -0.26 -12.89 7.11 99.48 0.71 -12.19 16 25 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 26 H -0.24 -11.90 6.74 99.48 0.67 -11.23 16 27 H 0.05 1.61 5.46 -2.39 -0.01 1.59 16 28 H 0.05 1.77 4.98 -2.39 -0.01 1.76 16 29 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.06 1.59 7.93 -2.39 -0.02 1.57 16 31 H 0.04 0.79 7.85 -2.39 -0.02 0.78 16 32 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.09 1.88 7.92 -2.39 -0.02 1.86 16 34 H 0.05 1.42 7.21 -2.38 -0.02 1.41 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 1.75 8.10 -2.39 -0.02 1.73 16 39 H 0.07 1.52 7.85 -2.38 -0.02 1.50 16 40 H 0.05 0.88 8.12 -2.39 -0.02 0.86 16 41 H 0.09 0.89 7.79 -2.39 -0.02 0.87 16 42 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 1.45 7.48 -2.39 -0.02 1.43 16 46 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.09 3.63 7.85 -2.39 -0.02 3.61 16 48 H 0.09 3.61 8.14 -2.40 -0.02 3.59 16 49 H 0.28 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -71.79 382.08 3.27 -68.52 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.87 Total: 18.53 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 5.64 Total: -13.83 kcal Atomic # 7 Polarization: -88.18 SS G_CDS: -4.06 Total: -92.24 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.03 Total: -19.75 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.90 Total: 48.07 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.05 Total: -9.29 kcal Total: -71.79 3.27 -68.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755190559.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.058 kcal (2) G-P(sol) polarization free energy of solvation -71.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds