Wall clock time and date at job start Tue Mar 31 2020 14:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30373 * 125.96816 * 2 1 4 4 N 1.39914 * 109.02175 * 179.76344 * 3 2 1 5 5 C 1.46497 * 125.74340 * 180.29096 * 4 3 2 6 6 C 1.34418 * 108.51415 * 0.42762 * 4 3 2 7 7 F 1.35104 * 126.34255 * 179.84193 * 6 4 3 8 8 C 1.38501 * 107.31182 * 359.58522 * 6 4 3 9 9 C 1.47168 * 126.45996 * 180.28527 * 8 6 4 10 10 O 1.21635 * 120.00163 * 89.96748 * 9 8 6 11 11 N 1.34782 * 119.99622 * 269.97267 * 9 8 6 12 12 C 1.46494 * 119.99724 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.47562 * 325.00177 * 12 11 9 14 14 C 1.53002 * 109.47218 * 205.00081 * 12 11 9 15 15 N 1.46495 * 109.46988 * 55.00352 * 14 12 11 16 16 C 1.36943 * 120.00045 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99630 * 359.97438 * 16 15 14 18 18 C 1.38813 * 120.00086 * 179.97438 * 16 15 14 19 19 N 1.31616 * 119.99857 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99817 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47226 * 90.00059 * 20 18 16 22 22 H 1.48500 * 109.46923 * 210.00060 * 20 18 16 23 23 H 1.48507 * 109.47221 * 329.99851 * 20 18 16 24 24 C 1.53003 * 109.47120 * 85.00090 * 12 11 9 25 25 C 1.53001 * 109.47056 * 59.99790 * 24 12 11 26 26 C 1.52997 * 109.47438 * 179.97438 * 24 12 11 27 27 C 1.53002 * 109.47067 * 300.00083 * 24 12 11 28 28 H 1.08999 * 109.47298 * 269.97598 * 1 2 3 29 29 H 1.08997 * 109.47256 * 29.97605 * 1 2 3 30 30 H 1.08997 * 109.47088 * 149.97870 * 1 2 3 31 31 H 1.09000 * 109.47586 * 270.16272 * 5 4 3 32 32 H 1.09000 * 109.47130 * 30.16179 * 5 4 3 33 33 H 1.08999 * 109.47137 * 150.15793 * 5 4 3 34 34 H 0.96999 * 120.00161 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.47014 * 175.00368 * 14 12 11 36 36 H 1.09001 * 109.46772 * 295.00017 * 14 12 11 37 37 H 0.96995 * 120.00361 * 359.97438 * 15 14 12 38 38 H 0.97003 * 119.99997 * 180.02562 * 19 18 16 39 39 H 1.09004 * 109.47120 * 59.99906 * 25 24 12 40 40 H 1.08994 * 109.47293 * 179.97438 * 25 24 12 41 41 H 1.08999 * 109.47067 * 300.00682 * 25 24 12 42 42 H 1.09004 * 109.46827 * 59.99907 * 26 24 12 43 43 H 1.08994 * 109.47446 * 179.97438 * 26 24 12 44 44 H 1.09004 * 109.46788 * 300.00124 * 26 24 12 45 45 H 1.09002 * 109.47075 * 59.99921 * 27 24 12 46 46 H 1.09002 * 109.47389 * 179.97438 * 27 24 12 47 47 H 1.09004 * 109.47082 * 300.00022 * 27 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6474 0.0055 5 6 4.7762 1.5353 0.0132 6 6 3.6479 -0.6963 -0.0007 7 9 4.7577 -1.4669 -0.0012 8 6 2.3374 -1.1445 -0.0004 9 6 1.8929 -2.5475 -0.0001 10 8 1.7099 -3.1272 1.0534 11 7 1.6888 -3.1899 -1.1673 12 6 1.2469 -4.5866 -1.1670 13 1 1.6999 -5.1109 -0.3255 14 6 1.6733 -5.2567 -2.4747 15 7 3.1189 -5.1015 -2.6541 16 6 3.7313 -5.6239 -3.7620 17 1 3.1486 -6.1506 -4.5032 18 6 5.1010 -5.4764 -3.9323 19 7 5.8112 -4.8349 -3.0288 20 14 5.9365 -6.1895 -5.4432 21 1 5.9432 -5.1770 -6.5295 22 1 7.3336 -6.5633 -5.1062 23 1 5.1968 -7.3954 -5.8951 24 6 -0.2770 -4.6394 -1.0401 25 6 -0.9128 -3.9035 -2.2212 26 6 -0.7386 -6.0980 -1.0404 27 6 -0.7033 -3.9693 0.2676 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 5.0685 1.7604 -1.0124 32 1 4.5242 2.4610 0.5306 33 1 5.6031 1.0453 0.5274 34 1 1.8352 -2.7277 -2.0074 35 1 1.4235 -6.3171 -2.4378 36 1 1.1512 -4.7892 -3.3095 37 1 3.6422 -4.6281 -1.9887 38 1 6.7683 -4.7315 -3.1480 39 1 -0.6090 -4.3808 -3.1529 40 1 -1.9984 -3.9414 -2.1311 41 1 -0.5839 -2.8643 -2.2214 42 1 -0.2855 -6.6227 -0.1992 43 1 -1.8241 -6.1357 -0.9496 44 1 -0.4348 -6.5750 -1.9723 45 1 -0.3745 -2.9300 0.2674 46 1 -1.7890 -4.0064 0.3578 47 1 -0.2503 -4.4935 1.1091 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755837342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:33 Heat of formation + Delta-G solvation = 4.580090 kcal Electronic energy + Delta-G solvation = -29662.260592 eV Core-core repulsion = 25603.867006 eV Total energy + Delta-G solvation = -4058.393586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.186 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.11071 -41.37335 -39.72093 -37.19312 -34.39166 -34.22926 -33.07228 -31.07187 -30.37374 -29.55650 -27.67500 -27.08243 -26.84270 -25.87429 -23.82452 -22.49795 -21.35391 -20.69637 -20.00325 -18.54356 -17.90227 -17.11645 -16.83588 -16.43269 -16.04225 -15.76879 -15.20699 -14.65558 -14.61502 -14.18858 -13.87741 -13.79099 -13.70439 -13.50882 -13.39625 -13.16552 -13.08826 -12.76139 -12.60143 -12.54052 -12.21411 -12.10445 -11.87165 -11.74969 -11.32561 -11.17380 -11.08382 -10.91586 -10.80449 -10.68512 -10.42524 -10.20335 -9.90792 -9.72039 -9.61811 -9.37081 -8.87522 -8.68578 -8.50578 -6.92057 -5.75561 -3.05102 1.40292 1.89825 2.25542 2.85858 3.42501 3.48039 3.49728 3.64549 3.89567 4.33805 4.57715 4.72787 4.91515 4.97952 5.00605 5.04708 5.14896 5.18496 5.26304 5.33065 5.47305 5.56118 5.61373 5.63780 5.70969 5.77328 5.83983 5.94879 5.96963 6.08357 6.13541 6.16868 6.21829 6.27661 6.37622 6.51096 6.52026 6.56030 6.67661 6.70495 6.78959 7.02840 7.32735 7.69559 7.94333 8.41906 8.61131 9.53673 10.10824 10.45911 11.46444 Molecular weight = 326.19amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.005319 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.423824 B = 5262.732809 C = 7685.369351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.130 3.870 3 N -0.278 5.278 4 N -0.377 5.377 5 C 0.094 3.906 6 C 0.303 3.697 7 F -0.077 7.077 8 C -0.290 4.290 9 C 0.600 3.400 10 O -0.533 6.533 11 N -0.696 5.696 12 C 0.148 3.852 13 H 0.087 0.913 14 C 0.142 3.858 15 N -0.731 5.731 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.929 5.929 20 Si 0.905 3.095 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.076 4.076 25 C -0.142 4.142 26 C -0.140 4.140 27 C -0.132 4.132 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.404 0.596 35 H 0.035 0.965 36 H 0.029 0.971 37 H 0.386 0.614 38 H 0.254 0.746 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.042 0.958 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.082 11.328 6.081 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.037 4.037 3 N -0.101 5.101 4 N -0.162 5.162 5 C -0.047 4.047 6 C 0.156 3.844 7 F -0.056 7.056 8 C -0.306 4.306 9 C 0.384 3.616 10 O -0.410 6.410 11 N -0.346 5.346 12 C 0.043 3.957 13 H 0.105 0.895 14 C 0.014 3.986 15 N -0.376 5.376 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.577 5.577 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.078 4.078 25 C -0.199 4.199 26 C -0.198 4.198 27 C -0.189 4.189 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.239 0.761 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.220 0.780 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.947 12.121 6.679 17.646 hybrid contribution 1.471 -0.942 -1.076 2.051 sum -9.476 11.179 5.604 15.690 Atomic orbital electron populations 1.20319 0.85460 1.03952 1.03817 1.22119 0.96986 0.88159 0.96405 1.77224 0.84267 1.21301 1.27275 1.48612 1.07123 1.02735 1.57738 1.22048 0.83782 0.94466 1.04404 1.17885 0.83812 0.81700 1.01030 1.91761 1.49254 1.71225 1.93407 1.19733 0.90326 0.95851 1.24729 1.16885 0.76760 0.83820 0.84135 1.90776 1.51435 1.67301 1.31448 1.45929 1.67146 1.13287 1.08219 1.21318 0.92617 0.81285 1.00460 0.89490 1.21096 0.87222 0.97408 0.92860 1.42368 1.01468 1.67736 1.26039 1.19196 0.90807 1.28556 0.98593 0.91213 1.24737 0.96421 1.01216 0.98445 1.69678 1.06241 1.46724 1.35085 0.86219 0.78939 0.78621 0.82558 1.21835 1.21840 1.20765 1.20899 0.94817 0.96020 0.96037 1.21918 0.99657 1.00269 0.98040 1.21883 1.00458 0.95084 1.02398 1.21929 0.99324 1.01004 0.96645 0.89652 0.90074 0.89858 0.89782 0.88376 0.88973 0.76100 0.94697 0.95384 0.78025 0.93590 0.91946 0.93170 0.92831 0.92579 0.92909 0.91931 0.92712 0.93941 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.28 36.00 0.37 -0.40 16 2 C 0.13 1.78 7.26 -82.01 -0.60 1.18 16 3 N -0.28 -3.85 12.49 33.91 0.42 -3.43 16 4 N -0.38 -5.09 3.98 -67.94 -0.27 -5.36 16 5 C 0.09 0.82 11.43 59.85 0.68 1.51 16 6 C 0.30 4.88 8.70 -16.32 -0.14 4.74 16 7 F -0.08 -1.38 17.31 2.25 0.04 -1.34 16 8 C -0.29 -4.66 5.89 -104.97 -0.62 -5.28 16 9 C 0.60 10.43 5.71 -12.63 -0.07 10.36 16 10 O -0.53 -10.53 14.23 5.25 0.07 -10.46 16 11 N -0.70 -11.53 3.64 -54.96 -0.20 -11.73 16 12 C 0.15 2.49 1.69 -67.93 -0.11 2.37 16 13 H 0.09 1.69 7.58 -51.93 -0.39 1.29 16 14 C 0.14 2.73 5.10 -4.04 -0.02 2.71 16 15 N -0.73 -18.10 5.43 -59.91 -0.33 -18.43 16 16 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 20 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C -0.08 -1.03 0.62 -154.51 -0.10 -1.12 16 25 C -0.14 -1.70 7.97 37.16 0.30 -1.41 16 26 C -0.14 -1.76 8.12 37.16 0.30 -1.46 16 27 C -0.13 -1.78 7.00 37.16 0.26 -1.52 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.81 7.20 -51.93 -0.37 0.44 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.40 6.65 8.59 -40.82 -0.35 6.30 16 35 H 0.04 0.68 6.71 -51.93 -0.35 0.33 16 36 H 0.03 0.53 6.17 -51.93 -0.32 0.21 16 37 H 0.39 10.33 7.33 -40.82 -0.30 10.03 16 38 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 39 H 0.06 0.78 6.32 -51.93 -0.33 0.46 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.63 7.60 -51.93 -0.39 0.24 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.80 6.54 -51.93 -0.34 0.46 16 45 H 0.05 0.77 4.96 -51.93 -0.26 0.51 16 46 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.95 7.53 -51.93 -0.39 0.56 16 LS Contribution 382.20 15.07 5.76 5.76 Total: -1.00 -33.19 382.20 -5.94 -39.13 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -7.15 Total: 11.37 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 0.01 Total: 4.48 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: 0.35 Total: -66.20 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.46 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.19 -5.94 -39.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755837342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.709 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds