Wall clock time and date at job start Tue Mar 31 2020 14:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30373 * 125.96816 * 2 1 4 4 N 1.39914 * 109.02175 * 179.76344 * 3 2 1 5 5 C 1.46497 * 125.74340 * 180.29096 * 4 3 2 6 6 C 1.34418 * 108.51415 * 0.42762 * 4 3 2 7 7 F 1.35104 * 126.34255 * 179.84193 * 6 4 3 8 8 C 1.38501 * 107.31182 * 359.58522 * 6 4 3 9 9 C 1.47168 * 126.45996 * 180.28527 * 8 6 4 10 10 O 1.21635 * 120.00163 * 89.96748 * 9 8 6 11 11 N 1.34782 * 119.99622 * 269.97267 * 9 8 6 12 12 C 1.46494 * 119.99724 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.47562 * 325.00177 * 12 11 9 14 14 C 1.53002 * 109.47218 * 205.00081 * 12 11 9 15 15 N 1.46495 * 109.46988 * 55.00352 * 14 12 11 16 16 C 1.36943 * 120.00045 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99630 * 359.97438 * 16 15 14 18 18 C 1.38813 * 120.00086 * 179.97438 * 16 15 14 19 19 N 1.31616 * 119.99857 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99817 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47226 * 90.00059 * 20 18 16 22 22 H 1.48500 * 109.46923 * 210.00060 * 20 18 16 23 23 H 1.48507 * 109.47221 * 329.99851 * 20 18 16 24 24 C 1.53003 * 109.47120 * 85.00090 * 12 11 9 25 25 C 1.53001 * 109.47056 * 59.99790 * 24 12 11 26 26 C 1.52997 * 109.47438 * 179.97438 * 24 12 11 27 27 C 1.53002 * 109.47067 * 300.00083 * 24 12 11 28 28 H 1.08999 * 109.47298 * 269.97598 * 1 2 3 29 29 H 1.08997 * 109.47256 * 29.97605 * 1 2 3 30 30 H 1.08997 * 109.47088 * 149.97870 * 1 2 3 31 31 H 1.09000 * 109.47586 * 270.16272 * 5 4 3 32 32 H 1.09000 * 109.47130 * 30.16179 * 5 4 3 33 33 H 1.08999 * 109.47137 * 150.15793 * 5 4 3 34 34 H 0.96999 * 120.00161 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.47014 * 175.00368 * 14 12 11 36 36 H 1.09001 * 109.46772 * 295.00017 * 14 12 11 37 37 H 0.96995 * 120.00361 * 359.97438 * 15 14 12 38 38 H 0.97003 * 119.99997 * 180.02562 * 19 18 16 39 39 H 1.09004 * 109.47120 * 59.99906 * 25 24 12 40 40 H 1.08994 * 109.47293 * 179.97438 * 25 24 12 41 41 H 1.08999 * 109.47067 * 300.00682 * 25 24 12 42 42 H 1.09004 * 109.46827 * 59.99907 * 26 24 12 43 43 H 1.08994 * 109.47446 * 179.97438 * 26 24 12 44 44 H 1.09004 * 109.46788 * 300.00124 * 26 24 12 45 45 H 1.09002 * 109.47075 * 59.99921 * 27 24 12 46 46 H 1.09002 * 109.47389 * 179.97438 * 27 24 12 47 47 H 1.09004 * 109.47082 * 300.00022 * 27 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6474 0.0055 5 6 4.7762 1.5353 0.0132 6 6 3.6479 -0.6963 -0.0007 7 9 4.7577 -1.4669 -0.0012 8 6 2.3374 -1.1445 -0.0004 9 6 1.8929 -2.5475 -0.0001 10 8 1.7099 -3.1272 1.0534 11 7 1.6888 -3.1899 -1.1673 12 6 1.2469 -4.5866 -1.1670 13 1 1.6999 -5.1109 -0.3255 14 6 1.6733 -5.2567 -2.4747 15 7 3.1189 -5.1015 -2.6541 16 6 3.7313 -5.6239 -3.7620 17 1 3.1486 -6.1506 -4.5032 18 6 5.1010 -5.4764 -3.9323 19 7 5.8112 -4.8349 -3.0288 20 14 5.9365 -6.1895 -5.4432 21 1 5.9432 -5.1770 -6.5295 22 1 7.3336 -6.5633 -5.1062 23 1 5.1968 -7.3954 -5.8951 24 6 -0.2770 -4.6394 -1.0401 25 6 -0.9128 -3.9035 -2.2212 26 6 -0.7386 -6.0980 -1.0404 27 6 -0.7033 -3.9693 0.2676 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 5.0685 1.7604 -1.0124 32 1 4.5242 2.4610 0.5306 33 1 5.6031 1.0453 0.5274 34 1 1.8352 -2.7277 -2.0074 35 1 1.4235 -6.3171 -2.4378 36 1 1.1512 -4.7892 -3.3095 37 1 3.6422 -4.6281 -1.9887 38 1 6.7683 -4.7315 -3.1480 39 1 -0.6090 -4.3808 -3.1529 40 1 -1.9984 -3.9414 -2.1311 41 1 -0.5839 -2.8643 -2.2214 42 1 -0.2855 -6.6227 -0.1992 43 1 -1.8241 -6.1357 -0.9496 44 1 -0.4348 -6.5750 -1.9723 45 1 -0.3745 -2.9300 0.2674 46 1 -1.7890 -4.0064 0.3578 47 1 -0.2503 -4.4935 1.1091 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755837342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:32 Heat of formation + Delta-G solvation = -17.780257 kcal Electronic energy + Delta-G solvation = -29663.230210 eV Core-core repulsion = 25603.867006 eV Total energy + Delta-G solvation = -4059.363203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.186 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.42794 -42.49822 -41.04619 -38.54246 -36.16862 -35.22176 -34.51941 -32.96945 -31.48836 -30.51748 -29.23622 -28.07397 -27.92893 -26.93117 -25.63691 -23.84820 -22.86127 -21.87189 -21.22081 -19.83281 -19.35425 -18.74357 -18.06107 -17.71674 -17.24673 -17.17805 -16.73259 -16.22359 -15.73752 -15.63548 -15.30940 -15.21244 -14.81347 -14.67826 -14.53112 -14.44918 -14.22359 -14.08040 -13.74324 -13.64943 -13.26818 -13.02582 -13.00029 -12.99285 -12.89639 -12.70868 -12.46340 -12.31256 -12.18491 -12.04873 -11.97893 -11.73550 -11.52161 -11.24487 -11.04636 -10.87165 -10.40809 -9.90665 -9.84071 -8.97320 -7.91949 -5.21499 0.22025 0.87911 1.15149 1.47619 1.49015 1.50249 1.57442 2.32972 2.56842 2.79733 3.30256 3.41978 3.69016 3.76451 3.80754 4.00316 4.11908 4.17677 4.21827 4.27315 4.29422 4.38685 4.50225 4.54393 4.69732 4.73473 4.77924 4.88462 4.90806 4.92611 4.94202 5.03260 5.13685 5.15989 5.20281 5.29128 5.34891 5.38002 5.51765 5.52603 5.60399 5.64536 5.68881 6.24652 6.27964 6.56196 7.23586 7.34977 8.09600 8.32843 9.30840 Molecular weight = 326.19amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.005319 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.423824 B = 5262.732809 C = 7685.369351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.133 3.867 3 N -0.279 5.279 4 N -0.369 5.369 5 C 0.081 3.919 6 C 0.280 3.720 7 F -0.095 7.095 8 C -0.310 4.310 9 C 0.603 3.397 10 O -0.563 6.563 11 N -0.690 5.690 12 C 0.156 3.844 13 H 0.055 0.945 14 C 0.144 3.856 15 N -0.744 5.744 16 C -0.240 4.240 17 H 0.079 0.921 18 C -0.074 4.074 19 N -0.967 5.967 20 Si 0.971 3.029 21 H -0.287 1.287 22 H -0.300 1.300 23 H -0.269 1.269 24 C -0.069 4.069 25 C -0.137 4.137 26 C -0.139 4.139 27 C -0.125 4.125 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.405 0.595 35 H 0.039 0.961 36 H 0.045 0.955 37 H 0.372 0.628 38 H 0.248 0.752 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.068 0.932 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.151 12.176 5.012 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.033 4.033 3 N -0.102 5.102 4 N -0.154 5.154 5 C -0.057 4.057 6 C 0.132 3.868 7 F -0.075 7.075 8 C -0.326 4.326 9 C 0.388 3.612 10 O -0.442 6.442 11 N -0.339 5.339 12 C 0.051 3.949 13 H 0.073 0.927 14 C 0.018 3.982 15 N -0.387 5.387 16 C -0.372 4.372 17 H 0.097 0.903 18 C -0.267 4.267 19 N -0.618 5.618 20 Si 0.801 3.199 21 H -0.214 1.214 22 H -0.227 1.227 23 H -0.194 1.194 24 C -0.071 4.071 25 C -0.195 4.195 26 C -0.197 4.197 27 C -0.182 4.182 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.140 0.860 33 H 0.120 0.880 34 H 0.240 0.760 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.203 0.797 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.059 12.977 5.584 19.239 hybrid contribution 2.077 -1.189 -0.707 2.496 sum -10.982 11.788 4.877 16.833 Atomic orbital electron populations 1.20484 0.82898 1.05178 1.04896 1.22619 0.98468 0.86894 0.95363 1.77205 0.84424 1.21318 1.27288 1.48971 1.08066 1.02093 1.56251 1.22469 0.82716 0.94740 1.05815 1.18082 0.83431 0.82905 1.02430 1.91706 1.50093 1.71951 1.93725 1.19813 0.91025 0.95752 1.26025 1.17056 0.76055 0.84348 0.83711 1.90757 1.52859 1.68166 1.32374 1.45876 1.66842 1.13042 1.08130 1.21199 0.95035 0.80899 0.97739 0.92720 1.21242 0.84358 0.97970 0.94625 1.42565 1.03600 1.67413 1.25087 1.19618 0.91153 1.27365 0.99046 0.90267 1.25541 0.97298 1.02429 1.01407 1.69852 1.05996 1.48775 1.37182 0.85170 0.77296 0.78256 0.79192 1.21391 1.22725 1.19350 1.20858 0.91975 0.97206 0.97064 1.21885 1.01014 0.99941 0.96611 1.21885 1.01984 0.94007 1.01821 1.21841 1.00689 1.00168 0.95508 0.88538 0.87881 0.89532 0.88479 0.85958 0.88049 0.75964 0.94346 0.93692 0.79650 0.94295 0.92420 0.90775 0.92634 0.93579 0.90419 0.92219 0.93299 0.91355 0.94386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.28 71.24 0.73 -0.64 16 2 C 0.13 3.51 7.26 43.55 0.32 3.82 16 3 N -0.28 -7.39 12.49 -46.64 -0.58 -7.98 16 4 N -0.37 -9.77 3.98 -368.86 -1.47 -11.24 16 5 C 0.08 1.33 11.43 127.77 1.46 2.79 16 6 C 0.28 9.23 8.70 84.36 0.73 9.97 16 7 F -0.10 -3.58 17.31 44.97 0.78 -2.80 16 8 C -0.31 -10.08 5.89 -20.09 -0.12 -10.19 16 9 C 0.60 21.51 5.71 86.59 0.49 22.00 16 10 O -0.56 -23.04 14.23 -4.14 -0.06 -23.10 16 11 N -0.69 -23.21 3.64 -446.04 -1.62 -24.83 16 12 C 0.16 5.29 1.69 44.99 0.08 5.37 16 13 H 0.05 2.22 7.58 -2.38 -0.02 2.20 16 14 C 0.14 5.52 5.10 86.38 0.44 5.96 16 15 N -0.74 -37.31 5.43 -343.45 -1.87 -39.18 16 16 C -0.24 -13.16 9.99 84.03 0.84 -12.32 16 17 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 18 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 19 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 20 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 22 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 24 C -0.07 -1.79 0.62 -52.18 -0.03 -1.82 16 25 C -0.14 -2.93 7.97 71.98 0.57 -2.36 16 26 C -0.14 -3.26 8.12 71.98 0.58 -2.67 16 27 C -0.12 -3.22 7.00 71.98 0.50 -2.72 16 28 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.50 7.20 -2.39 -0.02 1.49 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.41 13.46 8.59 -92.71 -0.80 12.67 16 35 H 0.04 1.47 6.71 -2.39 -0.02 1.46 16 36 H 0.05 1.61 6.17 -2.39 -0.01 1.60 16 37 H 0.37 20.58 7.33 -92.71 -0.68 19.90 16 38 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.06 1.29 6.32 -2.39 -0.02 1.28 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 41 H 0.05 1.17 7.60 -2.39 -0.02 1.15 16 42 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.06 1.42 6.54 -2.39 -0.02 1.41 16 45 H 0.05 1.31 4.96 -2.39 -0.01 1.30 16 46 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.04 1.16 7.53 -2.39 -0.02 1.14 16 Total: -1.00 -72.69 382.20 4.09 -68.60 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: -0.47 Total: 38.47 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 7.07 Total: 13.39 kcal Atomic # 7 Polarization: -137.34 SS G_CDS: -5.26 Total: -142.60 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.06 Total: -23.10 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.78 Total: -2.80 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -72.69 4.09 -68.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755837342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.817 kcal (2) G-P(sol) polarization free energy of solvation -72.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds