Wall clock time and date at job start Tue Mar 31 2020 15:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.87285 * 2 1 4 4 C 1.55142 * 110.98603 * 236.15751 * 2 1 3 5 5 C 1.54327 * 103.01314 * 206.25199 * 4 2 1 6 6 H 1.08999 * 110.01987 * 262.80008 * 5 4 2 7 7 C 1.52996 * 109.88365 * 141.69199 * 5 4 2 8 8 N 1.47434 * 107.23210 * 22.28492 * 5 4 2 9 9 C 1.38404 * 110.99940 * 123.25977 * 8 5 4 10 10 N 1.31382 * 126.36923 * 275.48334 * 9 8 5 11 11 N 1.28510 * 110.07758 * 180.02562 * 10 9 8 12 12 C 1.31249 * 109.93421 * 359.71974 * 11 10 9 13 13 C 1.47880 * 126.47305 * 180.31703 * 12 11 10 14 14 C 1.39948 * 120.02156 * 197.53487 * 13 12 11 15 15 C 1.38339 * 120.35287 * 179.97438 * 14 13 12 16 16 C 1.37749 * 120.40285 * 359.97438 * 15 14 13 17 17 C 1.40789 * 120.03573 * 0.02562 * 16 15 14 18 18 C 1.41432 * 120.17288 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00375 * 29.20018 * 18 17 16 20 20 C 1.39917 * 119.99969 * 209.19620 * 18 17 16 21 21 N 1.30839 * 119.99854 * 12.61140 * 20 18 17 22 22 Si 1.86801 * 120.00196 * 192.60525 * 20 18 17 23 23 H 1.48494 * 109.46891 * 90.00459 * 22 20 18 24 24 H 1.48502 * 109.46965 * 210.00188 * 22 20 18 25 25 H 1.48501 * 109.47105 * 330.00061 * 22 20 18 26 26 C 1.38963 * 120.02088 * 17.25654 * 13 12 11 27 27 N 1.36462 * 126.37271 * 95.52263 * 9 8 5 28 28 C 1.46500 * 127.16825 * 359.97293 * 27 9 8 29 29 C 1.47842 * 108.57308 * 0.98636 * 8 5 4 30 30 H 1.09000 * 109.46897 * 183.84428 * 1 2 3 31 31 H 1.09002 * 109.47005 * 303.84464 * 1 2 3 32 32 H 1.08996 * 109.47323 * 63.84543 * 1 2 3 33 33 H 1.09000 * 110.70724 * 87.87122 * 4 2 1 34 34 H 1.09000 * 110.70897 * 324.63547 * 4 2 1 35 35 H 1.09006 * 109.47549 * 303.86919 * 7 5 4 36 36 H 1.09000 * 109.47456 * 63.87534 * 7 5 4 37 37 H 1.09005 * 109.47140 * 183.87238 * 7 5 4 38 38 H 1.08005 * 119.82986 * 359.97438 * 14 13 12 39 39 H 1.07999 * 119.79681 * 179.97438 * 15 14 13 40 40 H 1.08000 * 119.98141 * 180.02562 * 16 15 14 41 41 H 0.96997 * 120.00259 * 179.97438 * 21 20 18 42 42 H 1.08001 * 120.20194 * 0.02562 * 26 13 12 43 43 H 1.09000 * 109.47535 * 95.98653 * 28 27 9 44 44 H 1.09008 * 109.46675 * 335.98982 * 28 27 9 45 45 H 1.08995 * 109.47175 * 215.99271 * 28 27 9 46 46 H 1.09005 * 110.36901 * 94.73321 * 29 8 5 47 47 H 1.08997 * 110.37766 * 217.07553 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9184 1.0185 0.0000 4 6 2.0857 -0.8067 -1.2031 5 6 3.4692 -1.2708 -0.7010 6 1 4.2440 -0.5961 -1.0653 7 6 3.7485 -2.6944 -1.1871 8 7 3.4313 -1.2422 0.7725 9 6 3.7422 -2.4831 1.3008 10 7 2.9095 -3.4828 1.4837 11 7 3.5299 -4.4859 1.9941 12 6 4.7974 -4.1897 2.1625 13 6 5.8417 -5.0782 2.7163 14 6 7.0472 -4.5384 3.1789 15 6 8.0286 -5.3631 3.6987 16 6 7.8307 -6.7246 3.7676 17 6 6.6242 -7.2855 3.3070 18 6 6.4177 -8.6829 3.3768 19 1 6.8977 -9.2617 4.1519 20 6 5.5913 -9.3155 2.4416 21 7 5.2094 -8.6745 1.3668 22 14 5.0334 -11.0752 2.7274 23 1 3.7558 -11.0726 3.4842 24 1 4.8327 -11.7494 1.4196 25 1 6.0683 -11.8023 3.5056 26 6 5.6244 -6.4491 2.7831 27 7 4.9703 -2.8956 1.7294 28 6 6.2152 -2.1233 1.7235 29 6 2.0850 -0.8063 1.2006 30 1 -0.3633 -1.0254 0.0689 31 1 -0.3633 0.5724 0.8535 32 1 -0.3634 0.4530 -0.9224 33 1 2.1884 -0.1684 -2.0807 34 1 1.4474 -1.6631 -1.4207 35 1 2.9453 -3.3544 -0.8594 36 1 3.8040 -2.7024 -2.2756 37 1 4.6953 -3.0407 -0.7725 38 1 7.2123 -3.4721 3.1298 39 1 8.9557 -4.9370 4.0527 40 1 8.6013 -7.3621 4.1751 41 1 4.6368 -9.1132 0.7182 42 1 4.6940 -6.8695 2.4310 43 1 6.3653 -1.6682 2.7025 44 1 6.1546 -1.3424 0.9653 45 1 7.0519 -2.7845 1.4980 46 1 1.4524 -1.6709 1.4019 47 1 2.1545 -0.1719 2.0841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772158773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:31 Heat of formation + Delta-G solvation = 109.816618 kcal Electronic energy + Delta-G solvation = -28000.328232 eV Core-core repulsion = 24377.267269 eV Total energy + Delta-G solvation = -3623.060963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.52595 -39.49625 -37.53688 -34.69928 -33.92376 -33.43253 -31.81253 -30.73283 -29.67413 -28.00281 -27.34099 -26.65718 -25.38701 -25.22426 -22.52041 -21.99489 -20.83128 -20.56178 -19.80380 -19.44202 -17.46810 -16.84082 -16.52539 -15.75649 -15.51246 -15.33178 -14.88427 -14.49746 -14.29228 -13.82418 -13.38326 -13.32628 -13.17213 -12.92783 -12.82568 -12.67381 -12.51071 -12.33789 -12.29283 -11.87959 -11.70708 -11.58331 -11.24542 -11.13634 -11.10317 -10.93808 -10.82522 -10.70404 -10.67418 -10.52036 -10.21562 -9.73198 -9.69746 -9.60281 -9.32664 -9.07496 -8.47263 -7.49267 -7.23119 -6.74755 -4.42951 1.81784 2.56696 2.72638 2.86902 3.09924 3.12670 3.15793 3.63016 3.84841 3.94569 4.36801 4.40649 4.61515 4.64623 4.91323 4.99487 5.08552 5.17747 5.20063 5.32269 5.34984 5.40761 5.47894 5.48984 5.56312 5.59269 5.65279 5.72161 5.75745 5.84582 5.92397 5.96223 5.99826 6.14053 6.19139 6.25055 6.27790 6.40930 6.63055 6.65204 6.95739 6.99205 7.08720 7.22763 7.41252 7.54313 7.68228 7.85973 7.95341 8.17537 8.50162 8.82157 8.83393 9.27916 10.19881 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016735 B = 0.003330 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.693001 B = 8406.766333 C = 9452.622581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.084 0.916 4 C -0.130 4.130 5 C 0.079 3.921 6 H 0.090 0.910 7 C -0.171 4.171 8 N -0.454 5.454 9 C 0.329 3.671 10 N -0.317 5.317 11 N -0.282 5.282 12 C 0.261 3.739 13 C -0.024 4.024 14 C -0.234 4.234 15 C -0.094 4.094 16 C -0.212 4.212 17 C 0.106 3.894 18 C -0.461 4.461 19 H 0.081 0.919 20 C 0.074 3.926 21 N -0.792 5.792 22 Si 0.912 3.088 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.098 4.098 27 N -0.471 5.471 28 C 0.081 3.919 29 C 0.056 3.944 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.283 0.717 42 H 0.134 0.866 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.078 0.922 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.427 15.809 -5.098 16.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.102 0.898 4 C -0.169 4.169 5 C -0.029 4.029 6 H 0.108 0.892 7 C -0.229 4.229 8 N -0.179 5.179 9 C -0.027 4.027 10 N -0.161 5.161 11 N -0.122 5.122 12 C -0.002 4.002 13 C -0.027 4.027 14 C -0.255 4.255 15 C -0.112 4.112 16 C -0.232 4.232 17 C 0.103 3.897 18 C -0.491 4.491 19 H 0.099 0.901 20 C -0.144 4.144 21 N -0.417 5.417 22 Si 0.736 3.264 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.119 4.119 27 N -0.164 5.164 28 C -0.062 4.062 29 C -0.071 4.071 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.151 0.849 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.114 0.886 46 H 0.096 0.904 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.481 15.372 -5.147 16.819 hybrid contribution 0.604 -0.428 -0.280 0.791 sum -3.878 14.944 -5.427 16.365 Atomic orbital electron populations 1.21708 0.93967 1.02437 1.01801 1.22269 0.96029 0.99283 0.94271 0.89791 1.22934 0.95621 1.00243 0.98075 1.22471 0.98113 0.97496 0.84779 0.89183 1.22385 1.02978 0.96120 1.01404 1.60379 1.30169 1.18979 1.08394 1.22028 0.83718 0.93165 1.03766 1.74479 1.26596 0.96926 1.18142 1.74424 1.02024 1.18962 1.16790 1.23365 0.94740 0.82189 0.99942 1.17341 0.90660 0.91789 1.02925 1.20532 0.95589 0.97650 1.11770 1.20393 0.97088 0.93944 0.99781 1.21160 0.97678 0.94011 1.10339 1.17565 0.89514 0.93460 0.89126 1.19560 1.24984 0.92486 1.12031 0.90132 1.25912 0.94020 1.00602 0.93914 1.69762 1.26435 1.38510 1.06946 0.86254 0.79998 0.81505 0.78641 1.19153 1.20290 1.18676 1.21512 1.00060 0.89235 1.01124 1.46147 1.09370 1.12942 1.47910 1.22145 0.84280 0.96317 1.03469 1.23153 0.86515 0.99504 0.97927 0.92146 0.92362 0.92349 0.90493 0.90538 0.90840 0.91749 0.92591 0.88660 0.88813 0.88538 0.90605 0.84864 0.90453 0.89658 0.88616 0.90404 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.31 37.16 0.35 -0.78 16 2 C -0.10 -0.91 3.63 -88.48 -0.32 -1.23 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.13 -1.26 5.94 -24.90 -0.15 -1.41 16 5 C 0.08 0.93 3.99 -66.73 -0.27 0.67 16 6 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 7 C -0.17 -2.42 7.88 37.16 0.29 -2.13 16 8 N -0.45 -6.28 5.15 -163.84 -0.84 -7.13 16 9 C 0.33 5.79 4.52 -318.91 -1.44 4.35 16 10 N -0.32 -6.58 9.95 30.31 0.30 -6.28 16 11 N -0.28 -6.67 11.98 32.60 0.39 -6.27 16 12 C 0.26 5.79 7.71 -153.78 -1.19 4.60 16 13 C -0.02 -0.56 5.86 -105.04 -0.62 -1.18 16 14 C -0.23 -4.90 8.77 -38.90 -0.34 -5.24 16 15 C -0.09 -1.96 10.01 -39.72 -0.40 -2.36 16 16 C -0.21 -4.95 9.79 -38.80 -0.38 -5.33 16 17 C 0.11 2.76 5.53 -106.87 -0.59 2.17 16 18 C -0.46 -12.01 9.05 -37.74 -0.34 -12.35 16 19 H 0.08 2.00 7.88 -52.49 -0.41 1.58 16 20 C 0.07 1.85 5.21 -17.35 -0.09 1.76 16 21 N -0.79 -20.78 10.99 55.55 0.61 -20.17 16 22 Si 0.91 18.86 29.58 -169.99 -5.03 13.83 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 26 C -0.10 -2.56 8.30 -38.47 -0.32 -2.88 16 27 N -0.47 -8.53 2.86 -122.06 -0.35 -8.88 16 28 C 0.08 1.10 9.40 59.85 0.56 1.67 16 29 C 0.06 0.69 6.13 -2.30 -0.01 0.67 16 30 H 0.06 0.54 8.07 -51.93 -0.42 0.12 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.81 7.72 -51.93 -0.40 0.41 16 35 H 0.07 1.24 6.81 -51.93 -0.35 0.88 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.92 7.00 -51.93 -0.36 0.55 16 38 H 0.10 1.68 4.84 -52.48 -0.25 1.42 16 39 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 40 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 41 H 0.28 6.87 8.30 -40.82 -0.34 6.54 16 42 H 0.13 3.76 6.23 -52.49 -0.33 3.44 16 43 H 0.08 0.95 7.80 -51.93 -0.41 0.54 16 44 H 0.08 0.97 8.09 -51.92 -0.42 0.55 16 45 H 0.10 1.32 6.43 -51.93 -0.33 0.98 16 46 H 0.08 1.12 6.80 -51.93 -0.35 0.77 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -29.51 371.92 -11.55 -41.06 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.98 Total: 7.22 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -5.25 Total: -18.99 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.11 Total: -48.72 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.51 -11.55 -41.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772158773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.873 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds