Wall clock time and date at job start Tue Mar 31 2020 15:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.87285 * 2 1 4 4 C 1.55142 * 110.98603 * 236.15751 * 2 1 3 5 5 C 1.54327 * 103.01314 * 206.25199 * 4 2 1 6 6 H 1.08999 * 110.01987 * 262.80008 * 5 4 2 7 7 C 1.52996 * 109.88365 * 141.69199 * 5 4 2 8 8 N 1.47434 * 107.23210 * 22.28492 * 5 4 2 9 9 C 1.38404 * 110.99940 * 123.25977 * 8 5 4 10 10 N 1.31382 * 126.36923 * 275.48334 * 9 8 5 11 11 N 1.28510 * 110.07758 * 180.02562 * 10 9 8 12 12 C 1.31249 * 109.93421 * 359.71974 * 11 10 9 13 13 C 1.47880 * 126.47305 * 180.31703 * 12 11 10 14 14 C 1.39948 * 120.02156 * 197.53487 * 13 12 11 15 15 C 1.38339 * 120.35287 * 179.97438 * 14 13 12 16 16 C 1.37749 * 120.40285 * 359.97438 * 15 14 13 17 17 C 1.40789 * 120.03573 * 0.02562 * 16 15 14 18 18 C 1.41432 * 120.17288 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00375 * 29.20018 * 18 17 16 20 20 C 1.39917 * 119.99969 * 209.19620 * 18 17 16 21 21 N 1.30839 * 119.99854 * 12.61140 * 20 18 17 22 22 Si 1.86801 * 120.00196 * 192.60525 * 20 18 17 23 23 H 1.48494 * 109.46891 * 90.00459 * 22 20 18 24 24 H 1.48502 * 109.46965 * 210.00188 * 22 20 18 25 25 H 1.48501 * 109.47105 * 330.00061 * 22 20 18 26 26 C 1.38963 * 120.02088 * 17.25654 * 13 12 11 27 27 N 1.36462 * 126.37271 * 95.52263 * 9 8 5 28 28 C 1.46500 * 127.16825 * 359.97293 * 27 9 8 29 29 C 1.47842 * 108.57308 * 0.98636 * 8 5 4 30 30 H 1.09000 * 109.46897 * 183.84428 * 1 2 3 31 31 H 1.09002 * 109.47005 * 303.84464 * 1 2 3 32 32 H 1.08996 * 109.47323 * 63.84543 * 1 2 3 33 33 H 1.09000 * 110.70724 * 87.87122 * 4 2 1 34 34 H 1.09000 * 110.70897 * 324.63547 * 4 2 1 35 35 H 1.09006 * 109.47549 * 303.86919 * 7 5 4 36 36 H 1.09000 * 109.47456 * 63.87534 * 7 5 4 37 37 H 1.09005 * 109.47140 * 183.87238 * 7 5 4 38 38 H 1.08005 * 119.82986 * 359.97438 * 14 13 12 39 39 H 1.07999 * 119.79681 * 179.97438 * 15 14 13 40 40 H 1.08000 * 119.98141 * 180.02562 * 16 15 14 41 41 H 0.96997 * 120.00259 * 179.97438 * 21 20 18 42 42 H 1.08001 * 120.20194 * 0.02562 * 26 13 12 43 43 H 1.09000 * 109.47535 * 95.98653 * 28 27 9 44 44 H 1.09008 * 109.46675 * 335.98982 * 28 27 9 45 45 H 1.08995 * 109.47175 * 215.99271 * 28 27 9 46 46 H 1.09005 * 110.36901 * 94.73321 * 29 8 5 47 47 H 1.08997 * 110.37766 * 217.07553 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9184 1.0185 0.0000 4 6 2.0857 -0.8067 -1.2031 5 6 3.4692 -1.2708 -0.7010 6 1 4.2440 -0.5961 -1.0653 7 6 3.7485 -2.6944 -1.1871 8 7 3.4313 -1.2422 0.7725 9 6 3.7422 -2.4831 1.3008 10 7 2.9095 -3.4828 1.4837 11 7 3.5299 -4.4859 1.9941 12 6 4.7974 -4.1897 2.1625 13 6 5.8417 -5.0782 2.7163 14 6 7.0472 -4.5384 3.1789 15 6 8.0286 -5.3631 3.6987 16 6 7.8307 -6.7246 3.7676 17 6 6.6242 -7.2855 3.3070 18 6 6.4177 -8.6829 3.3768 19 1 6.8977 -9.2617 4.1519 20 6 5.5913 -9.3155 2.4416 21 7 5.2094 -8.6745 1.3668 22 14 5.0334 -11.0752 2.7274 23 1 3.7558 -11.0726 3.4842 24 1 4.8327 -11.7494 1.4196 25 1 6.0683 -11.8023 3.5056 26 6 5.6244 -6.4491 2.7831 27 7 4.9703 -2.8956 1.7294 28 6 6.2152 -2.1233 1.7235 29 6 2.0850 -0.8063 1.2006 30 1 -0.3633 -1.0254 0.0689 31 1 -0.3633 0.5724 0.8535 32 1 -0.3634 0.4530 -0.9224 33 1 2.1884 -0.1684 -2.0807 34 1 1.4474 -1.6631 -1.4207 35 1 2.9453 -3.3544 -0.8594 36 1 3.8040 -2.7024 -2.2756 37 1 4.6953 -3.0407 -0.7725 38 1 7.2123 -3.4721 3.1298 39 1 8.9557 -4.9370 4.0527 40 1 8.6013 -7.3621 4.1751 41 1 4.6368 -9.1132 0.7182 42 1 4.6940 -6.8695 2.4310 43 1 6.3653 -1.6682 2.7025 44 1 6.1546 -1.3424 0.9653 45 1 7.0519 -2.7845 1.4980 46 1 1.4524 -1.6709 1.4019 47 1 2.1545 -0.1719 2.0841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772158773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:30 Heat of formation + Delta-G solvation = 95.050199 kcal Electronic energy + Delta-G solvation = -28000.968552 eV Core-core repulsion = 24377.267269 eV Total energy + Delta-G solvation = -3623.701283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.02365 -40.55542 -39.32281 -36.18074 -35.50057 -34.65933 -33.02116 -32.22741 -31.49860 -29.41011 -28.62462 -27.67263 -27.22200 -26.29836 -24.19327 -23.30993 -22.49345 -21.63974 -21.21351 -20.69447 -19.25052 -17.96985 -17.87891 -17.23551 -16.97031 -16.75102 -16.55631 -16.04949 -15.35005 -15.11861 -14.88155 -14.55450 -14.31679 -14.26863 -14.11658 -13.96823 -13.78623 -13.51329 -13.47523 -13.33679 -12.97663 -12.84280 -12.82257 -12.62105 -12.49827 -12.43829 -12.16736 -11.83270 -11.81680 -11.64383 -11.52851 -11.49576 -11.33106 -11.16680 -11.04351 -10.63747 -9.81900 -9.35002 -8.97522 -8.60352 -6.38827 0.17732 0.98853 1.13766 1.28466 1.37109 1.48342 1.51020 1.94570 2.20559 2.69281 2.77210 3.36462 3.50973 3.54736 3.68324 3.72944 3.80085 4.08948 4.15091 4.26233 4.27911 4.29680 4.32768 4.43568 4.50516 4.56529 4.62662 4.66188 4.71353 4.73517 4.85200 4.87434 4.92503 4.97272 5.02945 5.08677 5.12210 5.15993 5.24685 5.29313 5.37284 5.42754 5.46459 5.58685 5.62857 5.87563 6.01264 6.07795 6.20759 6.31742 6.61032 6.91235 6.95418 7.70894 8.35219 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016735 B = 0.003330 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.693001 B = 8406.766333 C = 9452.622581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 H 0.109 0.891 4 C -0.126 4.126 5 C 0.078 3.922 6 H 0.121 0.879 7 C -0.166 4.166 8 N -0.447 5.447 9 C 0.355 3.645 10 N -0.349 5.349 11 N -0.325 5.325 12 C 0.237 3.763 13 C -0.029 4.029 14 C -0.217 4.217 15 C -0.089 4.089 16 C -0.218 4.218 17 C 0.075 3.925 18 C -0.497 4.497 19 H 0.083 0.917 20 C 0.030 3.970 21 N -0.832 5.832 22 Si 0.981 3.019 23 H -0.268 1.268 24 H -0.271 1.271 25 H -0.251 1.251 26 C -0.132 4.132 27 N -0.466 5.466 28 C 0.070 3.930 29 C 0.048 3.952 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.037 0.963 36 H 0.087 0.913 37 H 0.029 0.971 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.109 0.891 41 H 0.283 0.717 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.114 0.886 45 H 0.096 0.904 46 H 0.048 0.952 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 19.399 -5.671 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 H 0.127 0.873 4 C -0.164 4.164 5 C -0.029 4.029 6 H 0.139 0.861 7 C -0.224 4.224 8 N -0.173 5.173 9 C -0.002 4.002 10 N -0.193 5.193 11 N -0.165 5.165 12 C -0.028 4.028 13 C -0.032 4.032 14 C -0.238 4.238 15 C -0.107 4.107 16 C -0.239 4.239 17 C 0.073 3.927 18 C -0.527 4.527 19 H 0.101 0.899 20 C -0.184 4.184 21 N -0.458 5.458 22 Si 0.802 3.198 23 H -0.193 1.193 24 H -0.195 1.195 25 H -0.174 1.174 26 C -0.154 4.154 27 N -0.158 5.158 28 C -0.071 4.071 29 C -0.079 4.079 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.106 0.894 37 H 0.048 0.952 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.127 0.873 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.132 0.868 45 H 0.114 0.886 46 H 0.067 0.933 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.235 18.986 -5.716 20.090 hybrid contribution 0.251 -1.266 -0.135 1.298 sum -2.984 17.720 -5.851 18.898 Atomic orbital electron populations 1.21700 0.93172 1.01665 1.03183 1.22271 0.96581 0.99653 0.91957 0.87332 1.22947 0.93711 1.00287 0.99451 1.22695 1.00603 0.96352 0.83209 0.86126 1.22331 1.00087 0.97080 1.02884 1.60710 1.30974 1.15966 1.09649 1.22440 0.83091 0.93455 1.01169 1.74414 1.27689 0.97516 1.19725 1.74317 1.03457 1.20819 1.17885 1.23123 0.94223 0.83923 1.01530 1.17562 0.92037 0.91125 1.02449 1.21021 0.93934 0.99775 1.09036 1.20870 0.98648 0.92860 0.98343 1.21441 0.96967 0.95673 1.09779 1.17905 0.90704 0.93924 0.90215 1.19821 1.26835 0.93100 1.12961 0.89927 1.26767 0.93622 1.04742 0.93230 1.69875 1.27607 1.40301 1.08000 0.85208 0.79414 0.76428 0.78716 1.19279 1.19547 1.17436 1.21276 0.99369 0.90842 1.03898 1.46314 1.10841 1.11782 1.46839 1.22527 0.82242 0.96527 1.05802 1.23295 0.85446 0.99031 1.00109 0.93994 0.91497 0.90506 0.87226 0.92158 0.94375 0.89395 0.95187 0.84610 0.84226 0.87271 0.90622 0.88345 0.88274 0.86783 0.88572 0.93312 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.31 71.98 0.67 -1.23 16 2 C -0.09 -1.30 3.63 -9.41 -0.03 -1.33 16 3 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.13 -2.05 5.94 31.78 0.19 -1.86 16 5 C 0.08 1.64 3.99 45.26 0.18 1.82 16 6 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 7 C -0.17 -4.62 7.88 71.98 0.57 -4.05 16 8 N -0.45 -11.50 5.15 -672.26 -3.46 -14.96 16 9 C 0.35 12.46 4.52 260.13 1.18 13.64 16 10 N -0.35 -15.23 9.95 -58.02 -0.58 -15.81 16 11 N -0.32 -16.34 11.98 -50.79 -0.61 -16.95 16 12 C 0.24 10.87 7.71 136.23 1.05 11.92 16 13 C -0.03 -1.39 5.86 -20.14 -0.12 -1.50 16 14 C -0.22 -8.68 8.77 22.71 0.20 -8.48 16 15 C -0.09 -3.53 10.01 22.18 0.22 -3.31 16 16 C -0.22 -10.20 9.79 22.78 0.22 -9.98 16 17 C 0.07 4.07 5.53 -21.32 -0.12 3.96 16 18 C -0.50 -27.28 9.05 23.46 0.21 -27.07 16 19 H 0.08 4.29 7.88 -2.91 -0.02 4.26 16 20 C 0.03 1.60 5.21 85.25 0.44 2.05 16 21 N -0.83 -46.79 10.99 21.82 0.24 -46.55 16 22 Si 0.98 40.48 29.58 68.60 2.03 42.51 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 24 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 25 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 26 C -0.13 -7.35 8.30 22.99 0.19 -7.16 16 27 N -0.47 -16.56 2.86 -540.08 -1.55 -18.10 16 28 C 0.07 1.68 9.40 127.77 1.20 2.89 16 29 C 0.05 1.10 6.13 86.77 0.53 1.63 16 30 H 0.04 0.73 8.07 -2.39 -0.02 0.71 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 1.20 7.72 -2.39 -0.02 1.18 16 35 H 0.04 1.33 6.81 -2.38 -0.02 1.31 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.03 0.97 7.00 -2.38 -0.02 0.95 16 38 H 0.14 4.26 4.84 -2.91 -0.01 4.25 16 39 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 41 H 0.28 14.81 8.30 -92.71 -0.77 14.04 16 42 H 0.10 6.10 6.23 -2.91 -0.02 6.08 16 43 H 0.10 2.00 7.80 -2.39 -0.02 1.98 16 44 H 0.11 2.11 8.09 -2.38 -0.02 2.09 16 45 H 0.10 2.34 6.43 -2.39 -0.02 2.32 16 46 H 0.05 1.44 6.80 -2.38 -0.02 1.42 16 47 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -71.92 371.92 3.84 -68.08 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.97 Total: 29.85 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 6.79 Total: -28.07 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -5.95 Total: -112.37 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -71.92 3.84 -68.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772158773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.132 kcal (2) G-P(sol) polarization free energy of solvation -71.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds