Wall clock time and date at job start Tue Mar 31 2020 15:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.72653 * 2 1 4 4 C 1.54938 * 110.66631 * 236.91165 * 2 1 3 5 5 C 1.54594 * 102.92243 * 204.14793 * 4 2 1 6 6 H 1.08996 * 110.31226 * 263.03867 * 5 4 2 7 7 C 1.53005 * 110.39183 * 140.91447 * 5 4 2 8 8 C 1.53994 * 105.13956 * 21.96097 * 5 4 2 9 9 N 1.47904 * 107.05909 * 1.21842 * 8 5 4 10 10 C 1.38396 * 111.00353 * 214.16287 * 9 8 5 11 11 N 1.31378 * 126.37188 * 231.89185 * 10 9 8 12 12 N 1.28507 * 110.07760 * 179.75874 * 11 10 9 13 13 C 1.31249 * 109.93425 * 0.45507 * 12 11 10 14 14 C 1.47880 * 126.47084 * 179.82203 * 13 12 11 15 15 C 1.39955 * 120.02402 * 162.16532 * 14 13 12 16 16 C 1.38332 * 120.35383 * 180.27914 * 15 14 13 17 17 C 1.37760 * 120.39960 * 359.44307 * 16 15 14 18 18 C 1.40777 * 120.03777 * 0.27738 * 17 16 15 19 19 C 1.41436 * 120.17270 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00014 * 28.23972 * 19 18 17 21 21 C 1.39922 * 119.99631 * 208.24537 * 19 18 17 22 22 N 1.30836 * 120.00417 * 12.82797 * 21 19 18 23 23 Si 1.86799 * 119.99625 * 192.83241 * 21 19 18 24 24 H 1.48500 * 109.47241 * 59.99676 * 23 21 19 25 25 H 1.48503 * 109.47179 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47354 * 299.99908 * 23 21 19 27 27 C 1.38967 * 120.01926 * 341.88782 * 14 13 12 28 28 N 1.36460 * 126.37108 * 51.92976 * 10 9 8 29 29 C 1.46497 * 127.16753 * 359.95155 * 28 10 9 30 30 H 1.08997 * 109.46665 * 298.35144 * 1 2 3 31 31 H 1.08996 * 109.47414 * 58.34757 * 1 2 3 32 32 H 1.09000 * 109.47326 * 178.35285 * 1 2 3 33 33 H 1.09003 * 110.72391 * 85.78895 * 4 2 1 34 34 H 1.09002 * 110.87549 * 322.57890 * 4 2 1 35 35 H 1.09001 * 109.47045 * 302.78574 * 7 5 4 36 36 H 1.08998 * 109.47363 * 62.77879 * 7 5 4 37 37 H 1.08992 * 109.47298 * 182.78120 * 7 5 4 38 38 H 1.09000 * 109.91069 * 241.87367 * 8 5 4 39 39 H 1.08989 * 110.08535 * 120.66846 * 8 5 4 40 40 H 1.07998 * 119.82112 * 0.02562 * 15 14 13 41 41 H 1.07996 * 119.79672 * 179.72110 * 16 15 14 42 42 H 1.07997 * 119.97613 * 180.25187 * 17 16 15 43 43 H 0.96994 * 119.99804 * 179.97438 * 22 21 19 44 44 H 1.07997 * 120.20008 * 359.97438 * 27 14 13 45 45 H 1.09005 * 109.46812 * 263.68743 * 29 28 10 46 46 H 1.09008 * 109.46943 * 23.68431 * 29 28 10 47 47 H 1.08999 * 109.47733 * 143.68731 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0768 -0.7914 -1.2146 5 6 3.4853 -1.2196 -0.7425 6 1 4.2373 -0.5257 -1.1180 7 6 3.7953 -2.6424 -1.2120 8 6 3.4279 -1.1649 0.7954 9 7 2.0543 -0.7590 1.1642 10 6 2.0579 0.0237 2.3056 11 7 1.3337 -0.1690 3.3847 12 7 1.5881 0.7415 4.2551 13 6 2.4830 1.5764 3.7809 14 6 3.0359 2.7595 4.4745 15 6 4.2280 3.3401 4.0268 16 6 4.7544 4.4436 4.6740 17 6 4.1057 4.9904 5.7593 18 6 2.9024 4.4233 6.2202 19 6 2.2342 4.9820 7.3346 20 1 2.3388 6.0341 7.5551 21 6 1.4379 4.1717 8.1513 22 7 1.5047 2.8693 8.0451 23 14 0.2792 4.9493 9.3931 24 1 -0.6976 5.8147 8.6844 25 1 -0.4471 3.8827 10.1280 26 1 1.0607 5.7689 10.3537 27 6 2.3691 3.2991 5.5679 28 7 2.8137 1.1396 2.5192 29 6 3.7771 1.7459 1.5971 30 1 -0.3632 0.4880 0.9044 31 1 -0.3634 0.5393 -0.8747 32 1 -0.3634 -1.0272 -0.0295 33 1 2.1429 -0.1510 -2.0942 34 1 1.4571 -1.6642 -1.4204 35 1 3.0298 -3.3230 -0.8390 36 1 3.8071 -2.6711 -2.3015 37 1 4.7696 -2.9469 -0.8300 38 1 4.1441 -0.4324 1.1677 39 1 3.6499 -2.1466 1.2134 40 1 4.7418 2.9220 3.1738 41 1 5.6773 4.8817 4.3236 42 1 4.5207 5.8543 6.2570 43 1 0.9529 2.3077 8.6116 44 1 1.4464 2.8572 5.9137 45 1 4.7811 1.3978 1.8400 46 1 3.5309 1.4598 0.5745 47 1 3.7363 2.8311 1.6906 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772158774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:34 Heat of formation + Delta-G solvation = 109.448499 kcal Electronic energy + Delta-G solvation = -27941.351033 eV Core-core repulsion = 24318.274107 eV Total energy + Delta-G solvation = -3623.076926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.53806 -39.62820 -37.57127 -34.80313 -33.94788 -33.43837 -32.11301 -30.70048 -29.69375 -28.11172 -27.55415 -26.88012 -25.38225 -25.26684 -22.55820 -21.77361 -20.95420 -20.63827 -20.08708 -19.83456 -17.55712 -17.04919 -16.22029 -15.84988 -15.46329 -15.27164 -14.93449 -14.75813 -14.49496 -14.05718 -13.66339 -13.34356 -13.30122 -13.12625 -12.92577 -12.75264 -12.48369 -12.40846 -12.06997 -12.00611 -11.83968 -11.73245 -11.23015 -11.17949 -11.10365 -10.97665 -10.95820 -10.82498 -10.75834 -10.52767 -10.12587 -9.80317 -9.75218 -9.63244 -9.28807 -8.97079 -8.83772 -7.52183 -7.29340 -6.73569 -4.43743 1.74866 2.61111 2.72519 2.85737 3.09615 3.11442 3.15408 3.42223 3.62603 3.93881 4.15843 4.34760 4.44791 4.51838 4.59914 4.85675 4.96554 5.03647 5.04735 5.06803 5.14559 5.24981 5.35376 5.37580 5.45895 5.49290 5.57161 5.58202 5.67822 5.71763 5.72880 5.89544 5.94352 6.06658 6.11988 6.14848 6.21740 6.28429 6.49045 6.60199 6.82917 6.97729 7.07330 7.21649 7.38392 7.47822 7.65920 7.84130 7.93660 8.16100 8.48610 8.80911 8.81671 9.31968 10.19582 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020455 B = 0.003124 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.519166 B = 8961.045201 C = 9730.239113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.059 3.941 3 H 0.059 0.941 4 C -0.114 4.114 5 C -0.103 4.103 6 H 0.078 0.922 7 C -0.141 4.141 8 C 0.033 3.967 9 N -0.413 5.413 10 C 0.308 3.692 11 N -0.263 5.263 12 N -0.280 5.280 13 C 0.266 3.734 14 C -0.026 4.026 15 C -0.239 4.239 16 C -0.092 4.092 17 C -0.214 4.214 18 C 0.106 3.894 19 C -0.460 4.460 20 H 0.080 0.920 21 C 0.072 3.928 22 N -0.783 5.783 23 Si 0.911 3.089 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.266 1.266 27 C -0.099 4.099 28 N -0.504 5.504 29 C 0.068 3.932 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.286 0.714 44 H 0.136 0.864 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 -5.584 -18.105 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.048 4.048 3 H 0.077 0.923 4 C -0.152 4.152 5 C -0.122 4.122 6 H 0.096 0.904 7 C -0.198 4.198 8 C -0.095 4.095 9 N -0.137 5.137 10 C -0.046 4.046 11 N -0.105 5.105 12 N -0.120 5.120 13 C 0.002 3.998 14 C -0.029 4.029 15 C -0.260 4.260 16 C -0.110 4.110 17 C -0.234 4.234 18 C 0.103 3.897 19 C -0.490 4.490 20 H 0.098 0.902 21 C -0.147 4.147 22 N -0.407 5.407 23 Si 0.736 3.264 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.190 1.190 27 C -0.121 4.121 28 N -0.201 5.201 29 C -0.075 4.075 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.097 0.903 44 H 0.153 0.847 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.168 -6.972 -16.953 18.459 hybrid contribution 1.141 1.463 -0.388 1.896 sum 3.309 -5.510 -17.341 18.494 Atomic orbital electron populations 1.21645 0.92647 1.03041 1.01965 1.23020 0.97315 0.95714 0.88751 0.92339 1.22672 0.95516 1.00491 0.96494 1.22012 0.97662 0.98599 0.93916 0.90385 1.21816 1.01884 0.95129 1.01002 1.23228 0.88204 1.02465 0.95592 1.61828 1.19681 1.32643 0.99579 1.22961 0.96911 0.88337 0.96437 1.74471 1.19778 1.18903 0.97370 1.74679 1.14265 1.01764 1.21321 1.23408 0.96207 0.97843 0.82333 1.17360 0.96504 0.91635 0.97372 1.20463 0.99118 1.01919 1.04456 1.20374 0.98159 0.96117 0.96381 1.21132 0.97283 1.04038 1.00961 1.17561 0.89902 0.90826 0.91389 1.19538 1.24478 0.96601 1.08343 0.90178 1.25945 0.96111 0.94606 0.98052 1.69755 1.32481 1.04434 1.34026 0.86312 0.80383 0.79638 0.80102 1.18827 1.20165 1.19044 1.21566 1.00463 0.97671 0.92361 1.47136 1.34257 1.23255 1.15473 1.22372 0.91893 1.01188 0.92082 0.92177 0.91967 0.91256 0.90487 0.89763 0.91863 0.92399 0.92476 0.92829 0.89017 0.88998 0.88889 0.88549 0.90264 0.84664 0.90226 0.90250 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.47 37.16 0.35 -1.19 16 2 C 0.06 0.67 2.53 -65.79 -0.17 0.50 16 3 H 0.06 0.67 5.74 -51.93 -0.30 0.37 16 4 C -0.11 -0.90 6.04 -24.87 -0.15 -1.05 16 5 C -0.10 -0.80 3.58 -89.26 -0.32 -1.12 16 6 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 7 C -0.14 -0.94 8.90 37.16 0.33 -0.61 16 8 C 0.03 0.36 5.65 -2.75 -0.02 0.35 16 9 N -0.41 -5.80 5.05 -163.15 -0.82 -6.63 16 10 C 0.31 5.58 6.47 -318.93 -2.06 3.51 16 11 N -0.26 -5.86 12.22 30.31 0.37 -5.49 16 12 N -0.28 -6.84 11.99 32.59 0.39 -6.45 16 13 C 0.27 5.93 7.70 -153.78 -1.18 4.74 16 14 C -0.03 -0.60 5.86 -105.04 -0.62 -1.21 16 15 C -0.24 -4.95 8.78 -38.90 -0.34 -5.29 16 16 C -0.09 -1.92 10.01 -39.72 -0.40 -2.31 16 17 C -0.21 -4.98 9.78 -38.80 -0.38 -5.36 16 18 C 0.11 2.75 5.55 -106.87 -0.59 2.16 16 19 C -0.46 -11.94 9.06 -37.73 -0.34 -12.28 16 20 H 0.08 1.97 7.88 -52.49 -0.41 1.55 16 21 C 0.07 1.81 5.21 -17.35 -0.09 1.72 16 22 N -0.78 -20.71 10.92 55.55 0.61 -20.10 16 23 Si 0.91 18.80 29.58 -169.99 -5.03 13.77 16 24 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 27 C -0.10 -2.59 8.30 -38.46 -0.32 -2.91 16 28 N -0.50 -8.94 3.15 -122.06 -0.38 -9.32 16 29 C 0.07 0.86 7.24 59.85 0.43 1.29 16 30 H 0.06 0.86 8.03 -51.93 -0.42 0.44 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.77 8.13 -51.93 -0.42 0.34 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.66 7.77 -51.93 -0.40 0.25 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.61 5.07 -51.93 -0.26 0.35 16 39 H 0.09 1.04 7.69 -51.94 -0.40 0.64 16 40 H 0.09 1.59 4.84 -52.49 -0.25 1.34 16 41 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 43 H 0.29 7.04 8.30 -40.82 -0.34 6.70 16 44 H 0.14 3.82 6.15 -52.49 -0.32 3.49 16 45 H 0.08 0.90 7.37 -51.93 -0.38 0.52 16 46 H 0.08 0.79 5.09 -51.92 -0.26 0.53 16 47 H 0.10 1.31 6.50 -51.93 -0.34 0.97 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -30.50 367.88 -11.88 -42.38 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.69 Total: 5.37 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -5.86 Total: -19.08 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.16 Total: -47.99 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.50 -11.88 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772158774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.832 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds