Wall clock time and date at job start Tue Mar 31 2020 15:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.72653 * 2 1 4 4 C 1.54938 * 110.66631 * 236.91165 * 2 1 3 5 5 C 1.54594 * 102.92243 * 204.14793 * 4 2 1 6 6 H 1.08996 * 110.31226 * 263.03867 * 5 4 2 7 7 C 1.53005 * 110.39183 * 140.91447 * 5 4 2 8 8 C 1.53994 * 105.13956 * 21.96097 * 5 4 2 9 9 N 1.47904 * 107.05909 * 1.21842 * 8 5 4 10 10 C 1.38396 * 111.00353 * 214.16287 * 9 8 5 11 11 N 1.31378 * 126.37188 * 231.89185 * 10 9 8 12 12 N 1.28507 * 110.07760 * 179.75874 * 11 10 9 13 13 C 1.31249 * 109.93425 * 0.45507 * 12 11 10 14 14 C 1.47880 * 126.47084 * 179.82203 * 13 12 11 15 15 C 1.39955 * 120.02402 * 162.16532 * 14 13 12 16 16 C 1.38332 * 120.35383 * 180.27914 * 15 14 13 17 17 C 1.37760 * 120.39960 * 359.44307 * 16 15 14 18 18 C 1.40777 * 120.03777 * 0.27738 * 17 16 15 19 19 C 1.41436 * 120.17270 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00014 * 28.23972 * 19 18 17 21 21 C 1.39922 * 119.99631 * 208.24537 * 19 18 17 22 22 N 1.30836 * 120.00417 * 12.82797 * 21 19 18 23 23 Si 1.86799 * 119.99625 * 192.83241 * 21 19 18 24 24 H 1.48500 * 109.47241 * 59.99676 * 23 21 19 25 25 H 1.48503 * 109.47179 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47354 * 299.99908 * 23 21 19 27 27 C 1.38967 * 120.01926 * 341.88782 * 14 13 12 28 28 N 1.36460 * 126.37108 * 51.92976 * 10 9 8 29 29 C 1.46497 * 127.16753 * 359.95155 * 28 10 9 30 30 H 1.08997 * 109.46665 * 298.35144 * 1 2 3 31 31 H 1.08996 * 109.47414 * 58.34757 * 1 2 3 32 32 H 1.09000 * 109.47326 * 178.35285 * 1 2 3 33 33 H 1.09003 * 110.72391 * 85.78895 * 4 2 1 34 34 H 1.09002 * 110.87549 * 322.57890 * 4 2 1 35 35 H 1.09001 * 109.47045 * 302.78574 * 7 5 4 36 36 H 1.08998 * 109.47363 * 62.77879 * 7 5 4 37 37 H 1.08992 * 109.47298 * 182.78120 * 7 5 4 38 38 H 1.09000 * 109.91069 * 241.87367 * 8 5 4 39 39 H 1.08989 * 110.08535 * 120.66846 * 8 5 4 40 40 H 1.07998 * 119.82112 * 0.02562 * 15 14 13 41 41 H 1.07996 * 119.79672 * 179.72110 * 16 15 14 42 42 H 1.07997 * 119.97613 * 180.25187 * 17 16 15 43 43 H 0.96994 * 119.99804 * 179.97438 * 22 21 19 44 44 H 1.07997 * 120.20008 * 359.97438 * 27 14 13 45 45 H 1.09005 * 109.46812 * 263.68743 * 29 28 10 46 46 H 1.09008 * 109.46943 * 23.68431 * 29 28 10 47 47 H 1.08999 * 109.47733 * 143.68731 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0768 -0.7914 -1.2146 5 6 3.4853 -1.2196 -0.7425 6 1 4.2373 -0.5257 -1.1180 7 6 3.7953 -2.6424 -1.2120 8 6 3.4279 -1.1649 0.7954 9 7 2.0543 -0.7590 1.1642 10 6 2.0579 0.0237 2.3056 11 7 1.3337 -0.1690 3.3847 12 7 1.5881 0.7415 4.2551 13 6 2.4830 1.5764 3.7809 14 6 3.0359 2.7595 4.4745 15 6 4.2280 3.3401 4.0268 16 6 4.7544 4.4436 4.6740 17 6 4.1057 4.9904 5.7593 18 6 2.9024 4.4233 6.2202 19 6 2.2342 4.9820 7.3346 20 1 2.3388 6.0341 7.5551 21 6 1.4379 4.1717 8.1513 22 7 1.5047 2.8693 8.0451 23 14 0.2792 4.9493 9.3931 24 1 -0.6976 5.8147 8.6844 25 1 -0.4471 3.8827 10.1280 26 1 1.0607 5.7689 10.3537 27 6 2.3691 3.2991 5.5679 28 7 2.8137 1.1396 2.5192 29 6 3.7771 1.7459 1.5971 30 1 -0.3632 0.4880 0.9044 31 1 -0.3634 0.5393 -0.8747 32 1 -0.3634 -1.0272 -0.0295 33 1 2.1429 -0.1510 -2.0942 34 1 1.4571 -1.6642 -1.4204 35 1 3.0298 -3.3230 -0.8390 36 1 3.8071 -2.6711 -2.3015 37 1 4.7696 -2.9469 -0.8300 38 1 4.1441 -0.4324 1.1677 39 1 3.6499 -2.1466 1.2134 40 1 4.7418 2.9220 3.1738 41 1 5.6773 4.8817 4.3236 42 1 4.5207 5.8543 6.2570 43 1 0.9529 2.3077 8.6116 44 1 1.4464 2.8572 5.9137 45 1 4.7811 1.3978 1.8400 46 1 3.5309 1.4598 0.5745 47 1 3.7363 2.8311 1.6906 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772158774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:33 Heat of formation + Delta-G solvation = 93.833769 kcal Electronic energy + Delta-G solvation = -27942.028138 eV Core-core repulsion = 24318.274107 eV Total energy + Delta-G solvation = -3623.754031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.03591 -40.61019 -39.35758 -36.22174 -35.51547 -34.61167 -33.18952 -32.17864 -31.51139 -29.49357 -28.85259 -27.65371 -27.24227 -26.19320 -24.23643 -23.17347 -22.38331 -21.62459 -21.49076 -21.05028 -19.27731 -18.28890 -17.45991 -17.24641 -17.21495 -16.66390 -16.34681 -16.02393 -15.58086 -15.13371 -15.00596 -14.62735 -14.36709 -14.34675 -14.23156 -13.99131 -13.83371 -13.58596 -13.28924 -12.96372 -12.90422 -12.82093 -12.78952 -12.65392 -12.55645 -12.50125 -12.17456 -11.86001 -11.77288 -11.59907 -11.53990 -11.51457 -11.33527 -11.17727 -11.09971 -10.55907 -10.01919 -9.36802 -9.05794 -8.58571 -6.38676 0.12689 0.98168 1.13863 1.30022 1.37325 1.49148 1.50638 1.93272 2.20673 2.34316 2.76588 3.35632 3.43109 3.51350 3.61740 3.66504 3.78279 3.97261 4.02439 4.09640 4.15881 4.26045 4.38973 4.45754 4.50728 4.57240 4.59509 4.65414 4.70557 4.74560 4.80892 4.88036 4.89645 4.99150 5.05116 5.11583 5.14791 5.17433 5.22935 5.25216 5.35025 5.37148 5.41160 5.56321 5.63717 5.85885 5.99647 6.07221 6.17289 6.31510 6.60797 6.90574 6.95460 7.73556 8.35390 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020455 B = 0.003124 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.519166 B = 8961.045201 C = 9730.239113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.054 3.946 3 H 0.062 0.938 4 C -0.103 4.103 5 C -0.092 4.092 6 H 0.103 0.897 7 C -0.139 4.139 8 C 0.026 3.974 9 N -0.427 5.427 10 C 0.339 3.661 11 N -0.317 5.317 12 N -0.326 5.326 13 C 0.242 3.758 14 C -0.030 4.030 15 C -0.219 4.219 16 C -0.088 4.088 17 C -0.220 4.220 18 C 0.075 3.925 19 C -0.497 4.497 20 H 0.084 0.916 21 C 0.028 3.972 22 N -0.826 5.826 23 Si 0.981 3.019 24 H -0.260 1.260 25 H -0.275 1.275 26 H -0.253 1.253 27 C -0.135 4.135 28 N -0.493 5.493 29 C 0.054 3.946 30 H 0.019 0.981 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.109 0.891 43 H 0.285 0.715 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.112 0.888 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.035 -5.193 -21.989 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.053 4.053 3 H 0.080 0.920 4 C -0.140 4.140 5 C -0.111 4.111 6 H 0.121 0.879 7 C -0.196 4.196 8 C -0.100 4.100 9 N -0.153 5.153 10 C -0.016 4.016 11 N -0.158 5.158 12 N -0.166 5.166 13 C -0.023 4.023 14 C -0.033 4.033 15 C -0.240 4.240 16 C -0.106 4.106 17 C -0.240 4.240 18 C 0.073 3.927 19 C -0.526 4.526 20 H 0.102 0.898 21 C -0.186 4.186 22 N -0.452 5.452 23 Si 0.802 3.198 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.177 1.177 27 C -0.157 4.157 28 N -0.190 5.190 29 C -0.087 4.087 30 H 0.038 0.962 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.153 0.847 41 H 0.158 0.842 42 H 0.127 0.873 43 H 0.095 0.905 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.131 0.869 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.618 -6.570 -20.870 22.362 hybrid contribution 0.499 1.226 0.530 1.426 sum 5.117 -5.344 -20.340 21.644 Atomic orbital electron populations 1.21658 0.93299 1.02975 1.01226 1.23218 0.96908 0.96229 0.88926 0.92033 1.22690 0.95195 1.00570 0.95592 1.22033 0.98224 0.99968 0.90894 0.87899 1.21803 1.01674 0.94073 1.02095 1.23412 0.86249 1.01963 0.98415 1.62055 1.21944 1.32090 0.99198 1.23364 0.94338 0.87576 0.96366 1.74342 1.22475 1.19882 0.99127 1.74551 1.15681 1.03035 1.23332 1.23188 0.96969 0.97879 0.84301 1.17583 0.97256 0.91828 0.96680 1.20964 0.97385 1.00910 1.04696 1.20860 0.99226 0.95507 0.94968 1.21423 0.96518 1.04296 1.01772 1.17904 0.91357 0.91480 0.91996 1.19816 1.26454 0.96985 1.09391 0.89789 1.26813 0.97236 0.94783 0.99788 1.69884 1.33883 1.05910 1.35501 0.85258 0.78170 0.78669 0.77684 1.18473 1.19945 1.17695 1.21343 1.00485 0.99200 0.94626 1.47314 1.34478 1.22730 1.14458 1.22824 0.91848 1.01306 0.92702 0.96176 0.89141 0.91268 0.87467 0.89515 0.93000 0.90615 0.92153 0.92628 0.89756 0.84717 0.84201 0.87259 0.90460 0.88163 0.87905 0.86942 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.47 71.98 0.68 -2.23 16 2 C 0.05 1.07 2.53 45.26 0.11 1.18 16 3 H 0.06 1.20 5.74 -2.39 -0.01 1.18 16 4 C -0.10 -1.17 6.04 31.80 0.19 -0.98 16 5 C -0.09 -1.02 3.58 -9.91 -0.04 -1.05 16 6 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 7 C -0.14 -1.31 8.90 71.98 0.64 -0.67 16 8 C 0.03 0.51 5.65 86.45 0.49 1.00 16 9 N -0.43 -11.42 5.05 -670.09 -3.39 -14.80 16 10 C 0.34 12.31 6.47 260.13 1.68 13.99 16 11 N -0.32 -14.85 12.22 -58.03 -0.71 -15.56 16 12 N -0.33 -16.98 11.99 -50.79 -0.61 -17.59 16 13 C 0.24 11.14 7.70 136.23 1.05 12.19 16 14 C -0.03 -1.46 5.86 -20.13 -0.12 -1.57 16 15 C -0.22 -8.58 8.78 22.71 0.20 -8.38 16 16 C -0.09 -3.40 10.01 22.18 0.22 -3.18 16 17 C -0.22 -10.16 9.78 22.78 0.22 -9.93 16 18 C 0.07 4.06 5.55 -21.32 -0.12 3.94 16 19 C -0.50 -27.10 9.06 23.47 0.21 -26.89 16 20 H 0.08 4.30 7.88 -2.91 -0.02 4.28 16 21 C 0.03 1.50 5.21 85.25 0.44 1.95 16 22 N -0.83 -47.04 10.92 21.82 0.24 -46.80 16 23 Si 0.98 40.39 29.58 68.60 2.03 42.42 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 26 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 27 C -0.13 -7.48 8.30 22.99 0.19 -7.29 16 28 N -0.49 -17.04 3.15 -540.09 -1.70 -18.74 16 29 C 0.05 1.16 7.24 127.77 0.92 2.09 16 30 H 0.02 0.58 8.03 -2.39 -0.02 0.56 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 33 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.09 1.00 7.77 -2.39 -0.02 0.98 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.06 1.06 5.07 -2.39 -0.01 1.05 16 39 H 0.08 1.76 7.69 -2.39 -0.02 1.74 16 40 H 0.14 4.06 4.84 -2.91 -0.01 4.04 16 41 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 42 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 43 H 0.28 15.18 8.30 -92.71 -0.77 14.41 16 44 H 0.10 6.21 6.15 -2.91 -0.02 6.19 16 45 H 0.10 1.81 7.37 -2.38 -0.02 1.79 16 46 H 0.11 1.70 5.09 -2.38 -0.01 1.69 16 47 H 0.10 2.26 6.50 -2.39 -0.02 2.24 16 Total: -1.00 -75.17 367.88 3.85 -71.32 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.99 Total: 25.59 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 7.00 Total: -25.84 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -6.16 Total: -113.49 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -75.17 3.85 -71.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772158774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.153 kcal (2) G-P(sol) polarization free energy of solvation -75.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds