Wall clock time and date at job start Tue Mar 31 2020 15:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.28729 * 2 1 4 4 C 1.54256 * 110.32565 * 122.23210 * 2 1 3 5 5 C 1.54386 * 105.06122 * 118.89782 * 4 2 1 6 6 H 1.09001 * 110.40839 * 265.07793 * 5 4 2 7 7 C 1.52997 * 110.41165 * 142.63181 * 5 4 2 8 8 N 1.48560 * 104.58963 * 23.85173 * 5 4 2 9 9 C 1.38409 * 110.99823 * 200.96122 * 8 5 4 10 10 N 1.31376 * 126.37034 * 6.13104 * 9 8 5 11 11 N 1.28510 * 110.08033 * 180.26452 * 10 9 8 12 12 C 1.31258 * 109.93292 * 0.02562 * 11 10 9 13 13 C 1.47865 * 126.47111 * 179.97438 * 12 11 10 14 14 C 1.39960 * 120.02458 * 198.84315 * 13 12 11 15 15 C 1.38328 * 120.35468 * 179.97438 * 14 13 12 16 16 C 1.37752 * 120.40620 * 0.02854 * 15 14 13 17 17 C 1.40783 * 120.03446 * 359.97438 * 16 15 14 18 18 C 1.41435 * 120.17503 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00142 * 29.39693 * 18 17 16 20 20 C 1.39916 * 120.00149 * 209.39575 * 18 17 16 21 21 N 1.30838 * 119.99917 * 11.53597 * 20 18 17 22 22 Si 1.86794 * 120.00069 * 191.53809 * 20 18 17 23 23 H 1.48494 * 109.47496 * 59.99738 * 22 20 18 24 24 H 1.48501 * 109.47309 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47127 * 299.99794 * 22 20 18 26 26 C 1.38968 * 120.02675 * 18.57351 * 13 12 11 27 27 N 1.36458 * 126.37206 * 186.44466 * 9 8 5 28 28 C 1.46506 * 127.16277 * 359.70375 * 27 9 8 29 29 C 1.48557 * 104.22611 * 320.51768 * 8 5 4 30 30 H 1.08999 * 109.46768 * 180.67933 * 1 2 3 31 31 H 1.09006 * 109.46931 * 300.67260 * 1 2 3 32 32 H 1.08998 * 109.47113 * 60.67593 * 1 2 3 33 33 H 1.08998 * 110.32697 * 237.78931 * 4 2 1 34 34 H 1.09003 * 110.32554 * 359.90198 * 4 2 1 35 35 H 1.09003 * 109.47092 * 303.36923 * 7 5 4 36 36 H 1.08992 * 109.47405 * 63.37489 * 7 5 4 37 37 H 1.09005 * 109.46657 * 183.37625 * 7 5 4 38 38 H 1.08002 * 119.82186 * 0.02562 * 14 13 12 39 39 H 1.07998 * 119.79555 * 180.02562 * 15 14 13 40 40 H 1.08004 * 119.98137 * 180.02562 * 16 15 14 41 41 H 0.97000 * 119.99646 * 179.97438 * 21 20 18 42 42 H 1.08006 * 120.19058 * 359.97438 * 26 13 12 43 43 H 1.08998 * 109.47230 * 95.35567 * 28 27 9 44 44 H 1.09001 * 109.46743 * 215.35187 * 28 27 9 45 45 H 1.08993 * 109.47078 * 335.34765 * 28 27 9 46 46 H 1.08998 * 110.41131 * 158.26481 * 29 8 5 47 47 H 1.08997 * 110.41089 * 280.70610 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0658 -0.7715 1.2236 5 6 2.8808 -1.9427 0.6340 6 1 2.2649 -2.8397 0.5694 7 6 4.1249 -2.2082 1.4839 8 7 3.2694 -1.4821 -0.7239 9 6 3.5873 -2.5543 -1.5393 10 7 3.4565 -3.8267 -1.2395 11 7 3.8506 -4.5545 -2.2226 12 6 4.2575 -3.7909 -3.2097 13 6 4.7846 -4.2466 -4.5138 14 6 5.5367 -3.3741 -5.3088 15 6 6.0335 -3.7935 -6.5297 16 6 5.7936 -5.0740 -6.9774 17 6 5.0392 -5.9655 -6.1914 18 6 4.7915 -7.2811 -6.6479 19 1 5.5035 -7.7709 -7.2956 20 6 3.6242 -7.9479 -6.2604 21 7 2.6604 -7.2897 -5.6691 22 14 3.4417 -9.7780 -6.5872 23 1 4.5249 -10.5159 -5.8892 24 1 2.1232 -10.2415 -6.0851 25 1 3.5316 -10.0314 -8.0477 26 6 4.5385 -5.5434 -4.9485 27 7 4.1005 -2.4866 -2.8018 28 6 4.4181 -1.2766 -3.5644 29 6 2.0662 -0.7699 -1.2260 30 1 -0.3633 -1.0276 0.0122 31 1 -0.3633 0.5243 0.8839 32 1 -0.3633 0.5033 -0.8960 33 1 2.7082 -0.1284 1.8251 34 1 1.2388 -1.1488 1.8252 35 1 4.7197 -1.2973 1.5518 36 1 3.8224 -2.5200 2.4835 37 1 4.7192 -2.9965 1.0216 38 1 5.7308 -2.3682 -4.9668 39 1 6.6131 -3.1128 -7.1357 40 1 6.1852 -5.3943 -7.9316 41 1 1.8509 -7.7520 -5.4007 42 1 3.9627 -6.2215 -4.3360 43 1 5.4743 -1.0367 -3.4420 44 1 4.2037 -1.4455 -4.6197 45 1 3.8124 -0.4474 -3.1989 46 1 2.3394 -0.0760 -2.0210 47 1 1.3229 -1.4834 -1.5817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772158775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:38 Heat of formation + Delta-G solvation = 103.630099 kcal Electronic energy + Delta-G solvation = -27744.961118 eV Core-core repulsion = 24121.631888 eV Total energy + Delta-G solvation = -3623.329231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.42495 -39.48206 -37.54289 -34.74090 -33.95325 -33.52242 -31.92149 -30.69727 -29.67383 -28.03858 -27.37306 -26.69941 -25.36669 -25.21341 -22.66709 -21.87778 -20.98749 -20.50139 -20.03567 -19.21119 -17.51840 -16.96869 -16.11673 -15.84312 -15.51630 -15.41166 -14.89130 -14.79295 -14.33037 -13.82150 -13.54003 -13.34180 -13.00783 -12.92647 -12.85862 -12.70747 -12.64344 -12.36316 -12.28231 -11.88302 -11.70278 -11.63296 -11.23427 -11.16220 -11.09986 -11.04454 -10.75072 -10.69311 -10.61140 -10.53812 -10.29269 -9.81102 -9.72485 -9.61129 -9.48212 -9.21967 -8.41388 -7.48776 -7.19528 -6.73767 -4.43184 1.82431 2.52242 2.73982 2.87824 3.09814 3.11574 3.16403 3.60872 3.84441 3.94722 4.21837 4.42593 4.61658 4.63216 4.82942 4.96108 5.03716 5.13154 5.18551 5.23021 5.28819 5.35179 5.41950 5.47364 5.53366 5.55473 5.58390 5.68653 5.71240 5.77967 5.80685 5.95061 5.98374 6.12209 6.15486 6.23600 6.26020 6.32566 6.60081 6.63274 6.93205 6.99224 7.08705 7.22889 7.40625 7.49488 7.68013 7.86020 7.95398 8.17740 8.50091 8.82376 8.83363 9.28908 10.20470 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016454 B = 0.003171 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.259277 B = 8828.592850 C = 9589.354345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.083 0.917 4 C -0.118 4.118 5 C 0.077 3.923 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.428 5.428 9 C 0.322 3.678 10 N -0.317 5.317 11 N -0.281 5.281 12 C 0.261 3.739 13 C -0.024 4.024 14 C -0.233 4.233 15 C -0.094 4.094 16 C -0.212 4.212 17 C 0.106 3.894 18 C -0.461 4.461 19 H 0.080 0.920 20 C 0.073 3.927 21 N -0.793 5.793 22 Si 0.913 3.087 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.266 1.266 26 C -0.097 4.097 27 N -0.478 5.478 28 C 0.079 3.921 29 C 0.038 3.962 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.283 0.717 42 H 0.134 0.866 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.799 14.698 9.447 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.101 0.899 4 C -0.156 4.156 5 C -0.030 4.030 6 H 0.097 0.903 7 C -0.192 4.192 8 N -0.153 5.153 9 C -0.034 4.034 10 N -0.162 5.162 11 N -0.120 5.120 12 C -0.003 4.003 13 C -0.027 4.027 14 C -0.254 4.254 15 C -0.112 4.112 16 C -0.232 4.232 17 C 0.104 3.896 18 C -0.491 4.491 19 H 0.098 0.902 20 C -0.145 4.145 21 N -0.418 5.418 22 Si 0.737 3.263 23 H -0.187 1.187 24 H -0.203 1.203 25 H -0.191 1.191 26 C -0.119 4.119 27 N -0.172 5.172 28 C -0.064 4.064 29 C -0.090 4.090 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.152 0.848 43 H 0.097 0.903 44 H 0.115 0.885 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.923 13.792 10.384 17.510 hybrid contribution -0.423 0.054 -1.039 1.123 sum -3.346 13.846 9.345 17.037 Atomic orbital electron populations 1.21879 0.94218 1.02244 1.01983 1.21860 0.95839 0.99679 0.93870 0.89859 1.22525 0.99428 0.96467 0.97171 1.22602 0.97074 0.97619 0.85702 0.90295 1.21669 0.96790 1.02122 0.98607 1.62136 1.33480 1.17817 1.01858 1.22491 1.03315 0.92376 0.85268 1.74503 1.21420 0.98095 1.22222 1.74408 1.15817 1.24696 0.97091 1.23353 1.01295 0.78313 0.97329 1.17341 1.01381 0.95918 0.88049 1.20500 1.08403 0.98596 0.97946 1.20386 0.99540 0.95937 0.95343 1.21163 1.08382 0.93783 0.99874 1.17557 0.89456 0.92838 0.89791 1.19527 1.04385 0.98268 1.26892 0.90180 1.25912 0.95092 1.00481 0.92988 1.69751 1.04896 1.37774 1.29393 0.86293 0.78386 0.82036 0.79587 1.18742 1.20276 1.19078 1.21534 1.01253 0.93159 0.95956 1.46046 1.49579 1.08349 1.13179 1.22200 1.02238 0.84468 0.97466 1.23348 0.90224 0.97338 0.98052 0.92373 0.92124 0.92421 0.90572 0.90543 0.92307 0.91885 0.91935 0.88776 0.88812 0.88526 0.90551 0.84793 0.90324 0.88463 0.89994 0.89784 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.90 37.16 0.33 -0.76 16 2 C -0.09 -0.80 3.65 -89.24 -0.33 -1.13 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.12 -1.05 6.20 -25.35 -0.16 -1.21 16 5 C 0.08 0.97 2.57 -66.07 -0.17 0.80 16 6 H 0.08 1.15 7.33 -51.93 -0.38 0.77 16 7 C -0.13 -1.60 9.33 37.16 0.35 -1.26 16 8 N -0.43 -5.97 5.08 -162.69 -0.83 -6.80 16 9 C 0.32 5.80 6.66 -318.92 -2.13 3.68 16 10 N -0.32 -6.77 10.78 30.31 0.33 -6.44 16 11 N -0.28 -6.77 11.99 32.59 0.39 -6.38 16 12 C 0.26 5.87 7.69 -153.78 -1.18 4.69 16 13 C -0.02 -0.56 5.86 -105.04 -0.62 -1.18 16 14 C -0.23 -4.90 8.73 -38.90 -0.34 -5.24 16 15 C -0.09 -1.97 10.01 -39.73 -0.40 -2.37 16 16 C -0.21 -4.96 9.79 -38.80 -0.38 -5.34 16 17 C 0.11 2.77 5.53 -106.87 -0.59 2.18 16 18 C -0.46 -12.04 9.05 -37.74 -0.34 -12.38 16 19 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 20 C 0.07 1.85 5.23 -17.35 -0.09 1.76 16 21 N -0.79 -20.90 10.95 55.55 0.61 -20.29 16 22 Si 0.91 18.90 29.57 -169.99 -5.03 13.87 16 23 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 24 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 C -0.10 -2.56 8.29 -38.47 -0.32 -2.88 16 27 N -0.48 -8.77 3.23 -122.06 -0.39 -9.16 16 28 C 0.08 1.07 9.38 59.85 0.56 1.63 16 29 C 0.04 0.43 5.61 -2.18 -0.01 0.42 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.60 7.84 -51.93 -0.41 0.20 16 34 H 0.08 0.61 7.71 -51.93 -0.40 0.20 16 35 H 0.06 0.65 8.12 -51.93 -0.42 0.22 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.93 7.90 -51.93 -0.41 0.52 16 38 H 0.09 1.67 4.96 -52.49 -0.26 1.41 16 39 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 41 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 42 H 0.13 3.81 6.22 -52.48 -0.33 3.48 16 43 H 0.08 0.96 7.78 -51.93 -0.40 0.56 16 44 H 0.10 1.33 6.51 -51.93 -0.34 0.99 16 45 H 0.08 0.89 6.09 -51.93 -0.32 0.57 16 46 H 0.08 0.85 6.54 -51.93 -0.34 0.51 16 47 H 0.06 0.75 7.69 -51.93 -0.40 0.35 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -30.13 373.10 -12.02 -42.15 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.91 Total: 6.02 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -5.81 Total: -18.59 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.11 Total: -49.07 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.13 -12.02 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772158775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.777 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds