Wall clock time and date at job start Tue Mar 31 2020 15:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.28729 * 2 1 4 4 C 1.54256 * 110.32565 * 122.23210 * 2 1 3 5 5 C 1.54386 * 105.06122 * 118.89782 * 4 2 1 6 6 H 1.09001 * 110.40839 * 265.07793 * 5 4 2 7 7 C 1.52997 * 110.41165 * 142.63181 * 5 4 2 8 8 N 1.48560 * 104.58963 * 23.85173 * 5 4 2 9 9 C 1.38409 * 110.99823 * 200.96122 * 8 5 4 10 10 N 1.31376 * 126.37034 * 6.13104 * 9 8 5 11 11 N 1.28510 * 110.08033 * 180.26452 * 10 9 8 12 12 C 1.31258 * 109.93292 * 0.02562 * 11 10 9 13 13 C 1.47865 * 126.47111 * 179.97438 * 12 11 10 14 14 C 1.39960 * 120.02458 * 198.84315 * 13 12 11 15 15 C 1.38328 * 120.35468 * 179.97438 * 14 13 12 16 16 C 1.37752 * 120.40620 * 0.02854 * 15 14 13 17 17 C 1.40783 * 120.03446 * 359.97438 * 16 15 14 18 18 C 1.41435 * 120.17503 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00142 * 29.39693 * 18 17 16 20 20 C 1.39916 * 120.00149 * 209.39575 * 18 17 16 21 21 N 1.30838 * 119.99917 * 11.53597 * 20 18 17 22 22 Si 1.86794 * 120.00069 * 191.53809 * 20 18 17 23 23 H 1.48494 * 109.47496 * 59.99738 * 22 20 18 24 24 H 1.48501 * 109.47309 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47127 * 299.99794 * 22 20 18 26 26 C 1.38968 * 120.02675 * 18.57351 * 13 12 11 27 27 N 1.36458 * 126.37206 * 186.44466 * 9 8 5 28 28 C 1.46506 * 127.16277 * 359.70375 * 27 9 8 29 29 C 1.48557 * 104.22611 * 320.51768 * 8 5 4 30 30 H 1.08999 * 109.46768 * 180.67933 * 1 2 3 31 31 H 1.09006 * 109.46931 * 300.67260 * 1 2 3 32 32 H 1.08998 * 109.47113 * 60.67593 * 1 2 3 33 33 H 1.08998 * 110.32697 * 237.78931 * 4 2 1 34 34 H 1.09003 * 110.32554 * 359.90198 * 4 2 1 35 35 H 1.09003 * 109.47092 * 303.36923 * 7 5 4 36 36 H 1.08992 * 109.47405 * 63.37489 * 7 5 4 37 37 H 1.09005 * 109.46657 * 183.37625 * 7 5 4 38 38 H 1.08002 * 119.82186 * 0.02562 * 14 13 12 39 39 H 1.07998 * 119.79555 * 180.02562 * 15 14 13 40 40 H 1.08004 * 119.98137 * 180.02562 * 16 15 14 41 41 H 0.97000 * 119.99646 * 179.97438 * 21 20 18 42 42 H 1.08006 * 120.19058 * 359.97438 * 26 13 12 43 43 H 1.08998 * 109.47230 * 95.35567 * 28 27 9 44 44 H 1.09001 * 109.46743 * 215.35187 * 28 27 9 45 45 H 1.08993 * 109.47078 * 335.34765 * 28 27 9 46 46 H 1.08998 * 110.41131 * 158.26481 * 29 8 5 47 47 H 1.08997 * 110.41089 * 280.70610 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0658 -0.7715 1.2236 5 6 2.8808 -1.9427 0.6340 6 1 2.2649 -2.8397 0.5694 7 6 4.1249 -2.2082 1.4839 8 7 3.2694 -1.4821 -0.7239 9 6 3.5873 -2.5543 -1.5393 10 7 3.4565 -3.8267 -1.2395 11 7 3.8506 -4.5545 -2.2226 12 6 4.2575 -3.7909 -3.2097 13 6 4.7846 -4.2466 -4.5138 14 6 5.5367 -3.3741 -5.3088 15 6 6.0335 -3.7935 -6.5297 16 6 5.7936 -5.0740 -6.9774 17 6 5.0392 -5.9655 -6.1914 18 6 4.7915 -7.2811 -6.6479 19 1 5.5035 -7.7709 -7.2956 20 6 3.6242 -7.9479 -6.2604 21 7 2.6604 -7.2897 -5.6691 22 14 3.4417 -9.7780 -6.5872 23 1 4.5249 -10.5159 -5.8892 24 1 2.1232 -10.2415 -6.0851 25 1 3.5316 -10.0314 -8.0477 26 6 4.5385 -5.5434 -4.9485 27 7 4.1005 -2.4866 -2.8018 28 6 4.4181 -1.2766 -3.5644 29 6 2.0662 -0.7699 -1.2260 30 1 -0.3633 -1.0276 0.0122 31 1 -0.3633 0.5243 0.8839 32 1 -0.3633 0.5033 -0.8960 33 1 2.7082 -0.1284 1.8251 34 1 1.2388 -1.1488 1.8252 35 1 4.7197 -1.2973 1.5518 36 1 3.8224 -2.5200 2.4835 37 1 4.7192 -2.9965 1.0216 38 1 5.7308 -2.3682 -4.9668 39 1 6.6131 -3.1128 -7.1357 40 1 6.1852 -5.3943 -7.9316 41 1 1.8509 -7.7520 -5.4007 42 1 3.9627 -6.2215 -4.3360 43 1 5.4743 -1.0367 -3.4420 44 1 4.2037 -1.4455 -4.6197 45 1 3.8124 -0.4474 -3.1989 46 1 2.3394 -0.0760 -2.0210 47 1 1.3229 -1.4834 -1.5817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772158775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:37 Heat of formation + Delta-G solvation = 89.056053 kcal Electronic energy + Delta-G solvation = -27745.593096 eV Core-core repulsion = 24121.631888 eV Total energy + Delta-G solvation = -3623.961209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.95283 -40.50024 -39.33665 -36.23282 -35.51191 -34.74765 -33.08926 -32.17229 -31.50574 -29.46939 -28.67019 -27.55452 -27.23394 -26.22077 -24.30993 -23.19195 -22.62575 -21.64322 -21.44703 -20.44502 -19.25580 -18.31440 -17.47324 -17.22520 -16.94737 -16.74622 -16.53628 -16.07359 -15.73142 -15.13940 -14.78989 -14.55623 -14.43038 -14.27819 -14.05260 -13.84710 -13.72850 -13.54855 -13.44346 -13.18185 -13.00130 -12.82045 -12.80879 -12.61006 -12.49071 -12.45533 -12.20927 -11.89384 -11.81270 -11.55463 -11.50557 -11.41999 -11.41175 -11.18707 -11.09234 -10.90186 -9.89506 -9.34838 -8.92956 -8.59528 -6.39408 0.16947 0.98922 1.09920 1.26936 1.37134 1.48935 1.50284 1.92166 2.20732 2.65531 2.77157 3.31431 3.45989 3.59269 3.66185 3.68456 3.91172 4.07088 4.09292 4.16534 4.25193 4.30319 4.40075 4.44680 4.51939 4.54776 4.55949 4.67538 4.70301 4.78040 4.82943 4.86555 4.92600 4.99694 5.05819 5.11694 5.16162 5.22893 5.23646 5.26680 5.33460 5.36985 5.42021 5.57290 5.61874 5.86797 6.00578 6.07355 6.13919 6.31221 6.60675 6.90934 6.95257 7.69499 8.35405 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016454 B = 0.003171 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.259277 B = 8828.592850 C = 9589.354345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 H 0.108 0.892 4 C -0.108 4.108 5 C 0.069 3.931 6 H 0.050 0.950 7 C -0.129 4.129 8 N -0.421 5.421 9 C 0.344 3.656 10 N -0.354 5.354 11 N -0.325 5.325 12 C 0.237 3.763 13 C -0.029 4.029 14 C -0.216 4.216 15 C -0.089 4.089 16 C -0.218 4.218 17 C 0.075 3.925 18 C -0.498 4.498 19 H 0.083 0.917 20 C 0.030 3.970 21 N -0.833 5.833 22 Si 0.982 3.018 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.253 1.253 26 C -0.132 4.132 27 N -0.473 5.473 28 C 0.067 3.933 29 C 0.033 3.967 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.024 0.976 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.110 0.890 41 H 0.283 0.717 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.113 0.887 46 H 0.104 0.896 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.333 18.515 9.810 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 H 0.126 0.874 4 C -0.146 4.146 5 C -0.038 4.038 6 H 0.068 0.932 7 C -0.186 4.186 8 N -0.146 5.146 9 C -0.013 4.013 10 N -0.198 5.198 11 N -0.164 5.164 12 C -0.029 4.029 13 C -0.032 4.032 14 C -0.236 4.236 15 C -0.107 4.107 16 C -0.238 4.238 17 C 0.073 3.927 18 C -0.528 4.528 19 H 0.101 0.899 20 C -0.184 4.184 21 N -0.460 5.460 22 Si 0.803 3.197 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.177 1.177 26 C -0.154 4.154 27 N -0.166 5.166 28 C -0.073 4.073 29 C -0.094 4.094 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.043 0.957 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.128 0.872 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.132 0.868 46 H 0.122 0.878 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.449 17.646 10.737 20.800 hybrid contribution -0.524 -0.863 -1.043 1.451 sum -2.973 16.783 9.694 19.608 Atomic orbital electron populations 1.21873 0.93400 1.01625 1.03238 1.21895 0.96416 1.00177 0.91790 0.87420 1.22532 0.99545 0.95070 0.97481 1.22750 0.97446 0.98326 0.85306 0.93225 1.21643 0.96270 1.01515 0.99214 1.62377 1.34641 1.15718 1.01909 1.22967 1.00664 0.92523 0.85153 1.74414 1.23349 0.99782 1.22291 1.74297 1.16841 1.26849 0.98397 1.23148 1.02638 0.80091 0.96985 1.17558 1.01297 0.95446 0.88868 1.20983 1.05800 0.99695 0.97142 1.20865 0.98794 0.95504 0.95516 1.21451 1.07577 0.94636 1.00159 1.17897 0.90690 0.93852 0.90280 1.19808 1.05287 0.99306 1.28386 0.89870 1.26776 0.94378 1.04864 0.92378 1.69870 1.05481 1.39476 1.31131 0.85247 0.78250 0.76242 0.79970 1.18606 1.19858 1.17675 1.21300 1.03295 0.94364 0.96436 1.46213 1.48814 1.08243 1.13348 1.22610 1.04278 0.83287 0.97167 1.23539 0.88590 0.97022 1.00213 0.93982 0.90202 0.91858 0.88471 0.89339 0.90770 0.89861 0.95668 0.84717 0.84174 0.87199 0.90618 0.88298 0.88221 0.88325 0.86827 0.87831 0.94867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.90 71.98 0.64 -1.10 16 2 C -0.08 -1.14 3.65 -9.90 -0.04 -1.18 16 3 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 4 C -0.11 -1.59 6.20 31.49 0.20 -1.40 16 5 C 0.07 1.65 2.57 45.06 0.12 1.77 16 6 H 0.05 1.50 7.33 -2.39 -0.02 1.48 16 7 C -0.13 -2.96 9.33 71.98 0.67 -2.29 16 8 N -0.42 -11.10 5.08 -668.62 -3.39 -14.49 16 9 C 0.34 12.45 6.66 260.13 1.73 14.18 16 10 N -0.35 -15.88 10.78 -58.03 -0.63 -16.50 16 11 N -0.32 -16.65 11.99 -50.80 -0.61 -17.26 16 12 C 0.24 11.02 7.69 136.23 1.05 12.06 16 13 C -0.03 -1.39 5.86 -20.14 -0.12 -1.51 16 14 C -0.22 -8.63 8.73 22.71 0.20 -8.43 16 15 C -0.09 -3.51 10.01 22.18 0.22 -3.29 16 16 C -0.22 -10.17 9.79 22.78 0.22 -9.95 16 17 C 0.07 4.09 5.53 -21.32 -0.12 3.98 16 18 C -0.50 -27.34 9.05 23.46 0.21 -27.12 16 19 H 0.08 4.30 7.87 -2.91 -0.02 4.28 16 20 C 0.03 1.58 5.23 85.25 0.45 2.02 16 21 N -0.83 -47.01 10.95 21.82 0.24 -46.77 16 22 Si 0.98 40.47 29.57 68.60 2.03 42.50 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 26 C -0.13 -7.38 8.29 22.99 0.19 -7.19 16 27 N -0.47 -17.04 3.23 -540.09 -1.75 -18.78 16 28 C 0.07 1.60 9.38 127.77 1.20 2.80 16 29 C 0.03 0.68 5.61 86.45 0.49 1.16 16 30 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.10 1.09 7.84 -2.39 -0.02 1.07 16 34 H 0.09 1.13 7.71 -2.39 -0.02 1.12 16 35 H 0.07 1.46 8.12 -2.39 -0.02 1.44 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.02 0.75 7.90 -2.38 -0.02 0.73 16 38 H 0.14 4.23 4.96 -2.91 -0.01 4.22 16 39 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 40 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 41 H 0.28 14.89 8.30 -92.71 -0.77 14.12 16 42 H 0.10 6.16 6.22 -2.91 -0.02 6.14 16 43 H 0.10 2.00 7.78 -2.39 -0.02 1.99 16 44 H 0.10 2.36 6.51 -2.39 -0.02 2.34 16 45 H 0.11 1.98 6.09 -2.39 -0.01 1.96 16 46 H 0.10 1.71 6.54 -2.39 -0.02 1.70 16 47 H 0.03 0.85 7.69 -2.39 -0.02 0.83 16 Total: -1.00 -73.28 373.10 4.18 -69.10 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.98 Total: 27.68 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 7.31 Total: -25.48 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -6.14 Total: -113.80 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -73.28 4.18 -69.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772158775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.160 kcal (2) G-P(sol) polarization free energy of solvation -73.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds