Wall clock time and date at job start Tue Mar 31 2020 14:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00108 * 2 1 4 4 H 1.48496 * 109.47209 * 269.99609 * 3 2 1 5 5 H 1.48500 * 109.46933 * 29.99713 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99495 * 3 2 1 7 7 C 1.37878 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00253 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99617 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46977 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46948 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47046 * 180.02562 * 11 10 9 13 13 C 1.34780 * 120.00038 * 179.97438 * 12 11 10 14 14 O 1.21347 * 119.99693 * 0.02562 * 13 12 11 15 15 C 1.49447 * 119.99807 * 179.97438 * 13 12 11 16 16 O 1.21342 * 120.00133 * 0.02562 * 15 13 12 17 17 N 1.34780 * 119.99807 * 180.02562 * 15 13 12 18 18 C 1.46501 * 120.00038 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47046 * 180.02562 * 18 17 15 20 20 C 1.53007 * 109.46948 * 179.97438 * 19 18 17 21 21 O 1.42897 * 109.47093 * 179.97438 * 20 19 18 22 22 C 1.42898 * 114.00017 * 179.97438 * 21 20 19 23 23 C 1.54894 * 110.48190 * 93.24436 * 22 21 20 24 24 C 1.55238 * 102.58338 * 156.67678 * 23 22 21 25 25 C 1.54266 * 104.23333 * 322.08174 * 24 23 22 26 26 C 1.53869 * 106.59800 * 23.61579 * 25 24 23 27 27 H 0.97005 * 120.00074 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46861 * 60.00316 * 9 7 2 29 29 H 1.08999 * 109.47436 * 300.00498 * 9 7 2 30 30 H 1.08997 * 109.46546 * 60.00245 * 10 9 7 31 31 H 1.08991 * 109.46926 * 300.00422 * 10 9 7 32 32 H 1.08999 * 109.47091 * 60.00272 * 11 10 9 33 33 H 1.08999 * 109.47236 * 300.00436 * 11 10 9 34 34 H 0.97003 * 119.99978 * 0.02562 * 12 11 10 35 35 H 0.97003 * 119.99984 * 0.02562 * 17 15 13 36 36 H 1.08999 * 109.47099 * 60.00301 * 18 17 15 37 37 H 1.08999 * 109.46805 * 300.00555 * 18 17 15 38 38 H 1.08999 * 109.47091 * 60.00094 * 19 18 17 39 39 H 1.08991 * 109.47437 * 299.99668 * 19 18 17 40 40 H 1.08999 * 109.47003 * 60.00218 * 20 19 18 41 41 H 1.08999 * 109.47000 * 300.00412 * 20 19 18 42 42 H 1.09002 * 110.43427 * 330.70321 * 22 21 20 43 43 H 1.08996 * 110.75388 * 275.06031 * 23 22 21 44 44 H 1.08993 * 110.76071 * 38.44257 * 23 22 21 45 45 H 1.09005 * 110.46917 * 203.39204 * 24 23 22 46 46 H 1.09007 * 110.58541 * 80.83124 * 24 23 22 47 47 H 1.08999 * 110.03060 * 264.32313 * 25 24 23 48 48 H 1.09006 * 110.06829 * 142.91691 * 25 24 23 49 49 H 1.09001 * 110.02983 * 240.71432 * 26 25 24 50 50 H 1.08996 * 110.07773 * 119.30576 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4802 -4.9871 0.0020 12 7 2.4322 -6.1006 0.0024 13 6 1.9829 -7.3713 0.0034 14 8 0.7898 -7.5930 0.0035 15 6 2.9540 -8.5072 0.0032 16 8 4.1470 -8.2855 0.0026 17 7 2.5047 -9.7779 0.0037 18 6 3.4567 -10.8915 0.0041 19 6 2.6917 -12.2164 0.0040 20 6 3.6859 -13.3794 0.0037 21 8 2.9714 -14.6170 0.0042 22 6 3.8113 -15.7730 0.0035 23 6 4.0646 -16.2599 1.4519 24 6 4.4233 -17.7564 1.2478 25 6 3.4865 -18.2197 0.1132 26 6 3.0974 -16.9587 -0.6780 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5574 -0.8880 29 1 0.6246 -2.5563 0.8919 30 1 2.8725 -3.6039 0.8909 31 1 2.8712 -3.6047 -0.8889 32 1 0.8532 -5.0449 -0.8877 33 1 0.8539 -5.0446 0.8922 34 1 3.3859 -5.9234 0.0026 35 1 1.5510 -9.9552 0.0038 36 1 4.0834 -10.8335 0.8940 37 1 4.0834 -10.8340 -0.8859 38 1 2.0653 -12.2742 -0.8862 39 1 2.0648 -12.2742 0.8937 40 1 4.3126 -13.3218 0.8937 41 1 4.3125 -13.3215 -0.8863 42 1 4.7553 -15.5573 -0.4971 43 1 4.8970 -15.7184 1.9014 44 1 3.1639 -16.1575 2.0570 45 1 4.2285 -18.3227 2.1586 46 1 5.4662 -17.8633 0.9491 47 1 2.5956 -18.6875 0.5322 48 1 4.0064 -18.9231 -0.5374 49 1 2.0176 -16.8144 -0.6430 50 1 3.4284 -17.0491 -1.7126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358009833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:55 Heat of formation + Delta-G solvation = -154.612120 kcal Electronic energy + Delta-G solvation = -25870.967898 eV Core-core repulsion = 21896.838774 eV Total energy + Delta-G solvation = -3974.129124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.63681 -39.49442 -38.59026 -36.96885 -35.94095 -35.32499 -33.35419 -32.18112 -31.25126 -29.26011 -28.34048 -27.35569 -26.13410 -24.11347 -22.54723 -22.12873 -21.25687 -20.79374 -20.76684 -20.06748 -18.35964 -17.63017 -16.88894 -16.66536 -16.37047 -16.22592 -15.91944 -15.67786 -15.16588 -15.00826 -14.77542 -14.44651 -14.28138 -13.87948 -13.80211 -13.66977 -13.41801 -12.98962 -12.34700 -12.31445 -12.17937 -11.91194 -11.86915 -11.80162 -11.75789 -11.67382 -11.63295 -11.42658 -11.13068 -10.97052 -10.91565 -10.76544 -10.60748 -9.96378 -9.90708 -9.80836 -9.53550 -9.38742 -9.13690 -8.98934 -8.38202 -6.02975 -4.06028 1.39812 2.25501 3.10230 3.20846 3.31014 3.37441 3.40524 3.67400 4.02621 4.07296 4.33890 4.41382 4.41970 4.45391 4.56536 4.61198 4.71357 4.88196 4.92946 4.93591 4.98307 5.09599 5.11716 5.18204 5.33107 5.33146 5.39023 5.50558 5.53395 5.56009 5.58803 5.65320 5.67484 5.68685 5.78364 5.92703 6.07576 6.26092 6.53610 6.68041 6.77282 6.88429 6.94725 7.38185 7.61394 7.69440 7.73019 7.95334 8.03653 8.36625 9.00510 9.58460 11.08329 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.057235 B = 0.001241 C = 0.001227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.090023 B =22550.930692 C =22815.655794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.691 5.691 13 C 0.500 3.500 14 O -0.526 6.526 15 C 0.509 3.491 16 O -0.520 6.520 17 N -0.704 5.704 18 C 0.121 3.879 19 C -0.133 4.133 20 C 0.067 3.933 21 O -0.379 6.379 22 C 0.083 3.917 23 C -0.148 4.148 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.123 4.123 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.411 0.589 35 H 0.415 0.585 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.077 0.923 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.666 -36.738 0.436 37.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.343 5.343 13 C 0.280 3.720 14 O -0.403 6.403 15 C 0.290 3.710 16 O -0.395 6.395 17 N -0.358 5.358 18 C -0.003 4.003 19 C -0.171 4.171 20 C -0.011 4.011 21 O -0.298 6.298 22 C 0.025 3.975 23 C -0.186 4.186 24 C -0.162 4.162 25 C -0.161 4.161 26 C -0.161 4.161 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.247 0.753 35 H 0.251 0.749 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.314 -36.609 0.434 37.544 hybrid contribution 0.716 0.970 0.000 1.206 sum 9.031 -35.638 0.434 36.767 Atomic orbital electron populations 1.69961 1.06073 1.26721 1.50558 1.25016 0.94843 0.99298 0.95205 0.86580 0.79832 0.83389 0.78121 1.20644 1.21195 1.19855 1.21203 0.93059 0.90896 1.50997 0.92570 1.19033 0.93796 0.90779 0.97718 1.21929 0.99885 0.92953 1.01320 1.21853 0.91739 0.84704 1.02568 1.46073 1.12240 1.04984 1.70971 1.19977 0.88431 0.84509 0.79104 1.90764 1.15980 1.84696 1.48849 1.20346 0.88791 0.84361 0.77502 1.90761 1.16262 1.84790 1.47735 1.45692 1.11680 1.04770 1.73671 1.21282 0.91738 0.84052 1.03203 1.21685 0.98952 0.91754 1.04661 1.22345 0.94253 0.83788 1.00677 1.87905 1.33688 1.13191 1.94999 1.23037 0.93341 0.85580 0.95509 1.23061 1.02124 0.96054 0.97316 1.22337 0.99510 0.95580 0.98784 1.22086 0.99711 0.97100 0.97187 1.22187 1.01883 0.92977 0.99054 0.92912 0.96200 0.96185 0.92417 0.92422 0.91053 0.91064 0.75302 0.74881 0.90686 0.90693 0.89993 0.89986 0.92873 0.92846 0.91487 0.91412 0.90346 0.91296 0.91479 0.91442 0.91551 0.90400 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.11 1.94 5.67 -4.04 -0.02 1.91 16 12 N -0.69 -10.30 5.55 -60.73 -0.34 -10.63 16 13 C 0.50 7.40 7.89 -11.58 -0.09 7.30 16 14 O -0.53 -8.85 16.48 5.50 0.09 -8.76 16 15 C 0.51 6.55 7.89 -11.58 -0.09 6.46 16 16 O -0.52 -7.64 16.48 5.50 0.09 -7.55 16 17 N -0.70 -6.80 5.55 -60.73 -0.34 -7.13 16 18 C 0.12 0.89 5.67 -4.04 -0.02 0.87 16 19 C -0.13 -0.78 5.70 -26.73 -0.15 -0.94 16 20 C 0.07 0.39 5.79 37.16 0.22 0.60 16 21 O -0.38 -2.86 10.05 -35.23 -0.35 -3.21 16 22 C 0.08 0.49 3.33 -25.07 -0.08 0.41 16 23 C -0.15 -0.78 6.65 -24.55 -0.16 -0.94 16 24 C -0.12 -0.52 6.84 -24.88 -0.17 -0.69 16 25 C -0.12 -0.52 6.80 -25.62 -0.17 -0.70 16 26 C -0.12 -0.65 6.56 -25.62 -0.17 -0.82 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.41 5.58 7.94 -40.82 -0.32 5.26 16 35 H 0.41 3.59 7.95 -40.82 -0.32 3.26 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.05 0.27 8.10 -51.93 -0.42 -0.15 16 42 H 0.07 0.34 7.84 -51.93 -0.41 -0.07 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 50 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 414.35 15.07 6.24 6.24 Total: -1.00 -32.46 414.35 -9.55 -42.01 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -9.05 Total: 0.43 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -1.62 Total: -1.90 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.06 Total: -43.69 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.17 Total: -19.52 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.46 -9.55 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358009833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.602 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds