Wall clock time and date at job start Tue Mar 31 2020 14:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00108 * 2 1 4 4 H 1.48496 * 109.47209 * 269.99609 * 3 2 1 5 5 H 1.48500 * 109.46933 * 29.99713 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99495 * 3 2 1 7 7 C 1.37878 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00253 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99617 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46977 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46948 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47046 * 180.02562 * 11 10 9 13 13 C 1.34780 * 120.00038 * 179.97438 * 12 11 10 14 14 O 1.21347 * 119.99693 * 0.02562 * 13 12 11 15 15 C 1.49447 * 119.99807 * 179.97438 * 13 12 11 16 16 O 1.21342 * 120.00133 * 0.02562 * 15 13 12 17 17 N 1.34780 * 119.99807 * 180.02562 * 15 13 12 18 18 C 1.46501 * 120.00038 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47046 * 180.02562 * 18 17 15 20 20 C 1.53007 * 109.46948 * 179.97438 * 19 18 17 21 21 O 1.42897 * 109.47093 * 179.97438 * 20 19 18 22 22 C 1.42898 * 114.00017 * 179.97438 * 21 20 19 23 23 C 1.54894 * 110.48190 * 93.24436 * 22 21 20 24 24 C 1.55238 * 102.58338 * 156.67678 * 23 22 21 25 25 C 1.54266 * 104.23333 * 322.08174 * 24 23 22 26 26 C 1.53869 * 106.59800 * 23.61579 * 25 24 23 27 27 H 0.97005 * 120.00074 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46861 * 60.00316 * 9 7 2 29 29 H 1.08999 * 109.47436 * 300.00498 * 9 7 2 30 30 H 1.08997 * 109.46546 * 60.00245 * 10 9 7 31 31 H 1.08991 * 109.46926 * 300.00422 * 10 9 7 32 32 H 1.08999 * 109.47091 * 60.00272 * 11 10 9 33 33 H 1.08999 * 109.47236 * 300.00436 * 11 10 9 34 34 H 0.97003 * 119.99978 * 0.02562 * 12 11 10 35 35 H 0.97003 * 119.99984 * 0.02562 * 17 15 13 36 36 H 1.08999 * 109.47099 * 60.00301 * 18 17 15 37 37 H 1.08999 * 109.46805 * 300.00555 * 18 17 15 38 38 H 1.08999 * 109.47091 * 60.00094 * 19 18 17 39 39 H 1.08991 * 109.47437 * 299.99668 * 19 18 17 40 40 H 1.08999 * 109.47003 * 60.00218 * 20 19 18 41 41 H 1.08999 * 109.47000 * 300.00412 * 20 19 18 42 42 H 1.09002 * 110.43427 * 330.70321 * 22 21 20 43 43 H 1.08996 * 110.75388 * 275.06031 * 23 22 21 44 44 H 1.08993 * 110.76071 * 38.44257 * 23 22 21 45 45 H 1.09005 * 110.46917 * 203.39204 * 24 23 22 46 46 H 1.09007 * 110.58541 * 80.83124 * 24 23 22 47 47 H 1.08999 * 110.03060 * 264.32313 * 25 24 23 48 48 H 1.09006 * 110.06829 * 142.91691 * 25 24 23 49 49 H 1.09001 * 110.02983 * 240.71432 * 26 25 24 50 50 H 1.08996 * 110.07773 * 119.30576 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4802 -4.9871 0.0020 12 7 2.4322 -6.1006 0.0024 13 6 1.9829 -7.3713 0.0034 14 8 0.7898 -7.5930 0.0035 15 6 2.9540 -8.5072 0.0032 16 8 4.1470 -8.2855 0.0026 17 7 2.5047 -9.7779 0.0037 18 6 3.4567 -10.8915 0.0041 19 6 2.6917 -12.2164 0.0040 20 6 3.6859 -13.3794 0.0037 21 8 2.9714 -14.6170 0.0042 22 6 3.8113 -15.7730 0.0035 23 6 4.0646 -16.2599 1.4519 24 6 4.4233 -17.7564 1.2478 25 6 3.4865 -18.2197 0.1132 26 6 3.0974 -16.9587 -0.6780 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5574 -0.8880 29 1 0.6246 -2.5563 0.8919 30 1 2.8725 -3.6039 0.8909 31 1 2.8712 -3.6047 -0.8889 32 1 0.8532 -5.0449 -0.8877 33 1 0.8539 -5.0446 0.8922 34 1 3.3859 -5.9234 0.0026 35 1 1.5510 -9.9552 0.0038 36 1 4.0834 -10.8335 0.8940 37 1 4.0834 -10.8340 -0.8859 38 1 2.0653 -12.2742 -0.8862 39 1 2.0648 -12.2742 0.8937 40 1 4.3126 -13.3218 0.8937 41 1 4.3125 -13.3215 -0.8863 42 1 4.7553 -15.5573 -0.4971 43 1 4.8970 -15.7184 1.9014 44 1 3.1639 -16.1575 2.0570 45 1 4.2285 -18.3227 2.1586 46 1 5.4662 -17.8633 0.9491 47 1 2.5956 -18.6875 0.5322 48 1 4.0064 -18.9231 -0.5374 49 1 2.0176 -16.8144 -0.6430 50 1 3.4284 -17.0491 -1.7126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358009833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:55 Heat of formation + Delta-G solvation = -176.410950 kcal Electronic energy + Delta-G solvation = -25871.913167 eV Core-core repulsion = 21896.838774 eV Total energy + Delta-G solvation = -3975.074392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.73427 -39.97581 -39.67785 -37.54432 -37.15111 -36.30285 -35.19908 -33.06524 -32.83826 -29.64059 -29.13450 -28.64021 -27.09759 -25.48374 -23.84132 -22.78899 -22.36572 -21.65099 -21.31972 -21.09397 -19.48524 -18.52328 -18.17753 -17.81880 -17.40940 -16.89187 -16.74241 -16.57833 -16.41630 -16.14441 -16.10841 -15.48726 -15.22702 -14.87389 -14.58428 -14.26928 -14.22121 -14.16535 -13.77600 -13.53936 -13.46090 -12.92538 -12.87944 -12.75619 -12.65928 -12.54754 -12.39938 -12.28473 -12.09429 -12.03364 -11.86986 -11.69641 -11.55592 -11.52574 -11.32584 -11.23360 -10.73512 -10.54334 -10.42159 -10.38103 -10.27738 -8.19075 -6.30034 0.29078 1.24564 1.42727 1.43421 1.54552 2.09100 2.41158 2.47829 2.80144 3.15122 3.39960 3.64952 3.69945 3.90837 3.93393 4.02351 4.08636 4.16499 4.18609 4.31452 4.43528 4.49103 4.52940 4.53533 4.57924 4.60206 4.72119 4.77513 4.86801 4.91989 4.94342 4.98082 5.05754 5.06096 5.14547 5.15729 5.19341 5.22995 5.24297 5.28002 5.44656 5.52059 5.71227 5.84909 5.86853 6.23214 6.31065 6.33144 6.68249 6.87012 6.89427 7.39570 8.92898 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.057235 B = 0.001241 C = 0.001227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.090023 B =22550.930692 C =22815.655794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.686 5.686 13 C 0.501 3.499 14 O -0.548 6.548 15 C 0.515 3.485 16 O -0.539 6.539 17 N -0.689 5.689 18 C 0.121 3.879 19 C -0.123 4.123 20 C 0.065 3.935 21 O -0.398 6.398 22 C 0.077 3.923 23 C -0.148 4.148 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.125 4.125 27 H 0.263 0.737 28 H -0.004 1.004 29 H -0.004 1.004 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.420 0.580 35 H 0.420 0.580 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.065 0.935 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.526 -37.697 0.380 39.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.338 5.338 13 C 0.282 3.718 14 O -0.427 6.427 15 C 0.295 3.705 16 O -0.417 6.417 17 N -0.342 5.342 18 C -0.001 4.001 19 C -0.161 4.161 20 C -0.012 4.012 21 O -0.318 6.318 22 C 0.020 3.980 23 C -0.186 4.186 24 C -0.160 4.160 25 C -0.160 4.160 26 C -0.163 4.163 27 H 0.072 0.928 28 H 0.014 0.986 29 H 0.015 0.985 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.257 0.743 35 H 0.258 0.742 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.094 0.906 49 H 0.083 0.917 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.190 -37.612 0.378 38.970 hybrid contribution 0.095 1.191 0.014 1.195 sum 10.285 -36.422 0.393 37.848 Atomic orbital electron populations 1.70097 1.07836 1.27782 1.51664 1.25959 0.95705 1.03342 0.94738 0.85459 0.78708 0.78510 0.78445 1.19855 1.20945 1.18618 1.21687 0.93723 0.92150 1.50552 0.91767 1.18935 0.94349 0.92594 0.95415 1.21641 0.98631 0.91881 1.02243 1.21483 0.91605 0.84535 1.02016 1.45883 1.12275 1.04661 1.71018 1.20339 0.88510 0.84831 0.78164 1.90755 1.17078 1.85050 1.49768 1.19892 0.87918 0.84662 0.77983 1.90761 1.16598 1.85027 1.49281 1.45719 1.12523 1.04251 1.71732 1.21421 0.91445 0.83655 1.03601 1.21576 0.98789 0.91029 1.04672 1.22403 0.94170 0.83163 1.01508 1.87874 1.34787 1.14007 1.95153 1.23186 0.93573 0.85255 0.96008 1.23050 1.01755 0.96929 0.96841 1.22348 0.99923 0.94798 0.98959 1.22093 0.99844 0.96781 0.97270 1.22213 1.01063 0.93373 0.99614 0.92791 0.98551 0.98535 0.91440 0.91427 0.91703 0.91719 0.74306 0.74204 0.90284 0.90248 0.89961 0.90030 0.92137 0.91933 0.90570 0.90936 0.91539 0.90896 0.90675 0.91537 0.90570 0.91667 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.96 43.75 29.54 68.60 2.03 45.77 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.11 -4.06 5.27 30.60 0.16 -3.90 16 11 C 0.13 4.30 5.67 86.38 0.49 4.79 16 12 N -0.69 -19.79 5.55 -464.42 -2.58 -22.36 16 13 C 0.50 14.36 7.89 87.27 0.69 15.05 16 14 O -0.55 -18.13 16.48 -3.24 -0.05 -18.19 16 15 C 0.52 12.56 7.89 87.27 0.69 13.24 16 16 O -0.54 -15.03 16.48 -3.22 -0.05 -15.08 16 17 N -0.69 -12.25 5.55 -464.42 -2.58 -14.82 16 18 C 0.12 1.57 5.67 86.38 0.49 2.06 16 19 C -0.12 -1.26 5.70 30.60 0.17 -1.09 16 20 C 0.06 0.66 5.79 71.98 0.42 1.07 16 21 O -0.40 -5.65 10.05 -148.98 -1.50 -7.15 16 22 C 0.08 0.83 3.33 31.67 0.11 0.94 16 23 C -0.15 -1.42 6.65 32.01 0.21 -1.21 16 24 C -0.12 -0.87 6.84 31.79 0.22 -0.66 16 25 C -0.12 -0.91 6.80 31.32 0.21 -0.69 16 26 C -0.12 -1.23 6.56 31.32 0.21 -1.02 16 27 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 28 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 29 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.42 10.80 7.94 -92.71 -0.74 10.06 16 35 H 0.42 6.68 7.95 -92.71 -0.74 5.95 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.06 0.52 8.10 -2.39 -0.02 0.50 16 42 H 0.08 0.66 7.84 -2.39 -0.02 0.64 16 43 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 46 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 47 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 49 H 0.06 0.80 8.07 -2.39 -0.02 0.78 16 50 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -68.96 414.35 -0.09 -69.05 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -0.55 Total: 18.50 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 4.91 Total: 0.50 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -4.87 Total: -93.41 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -1.60 Total: -40.41 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -68.96 -0.09 -69.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358009833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.361 kcal (2) G-P(sol) polarization free energy of solvation -68.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds