Wall clock time and date at job start Tue Mar 31 2020 14:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48495 * 109.47528 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47031 * 299.99853 * 3 2 1 6 6 H 1.48500 * 109.47201 * 59.99439 * 3 2 1 7 7 C 1.37884 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99656 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99623 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46913 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46992 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47018 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00121 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99667 * 5.08442 * 13 12 11 15 15 N 1.34770 * 120.00272 * 185.08432 * 13 12 11 16 16 C 1.47152 * 120.98104 * 354.98490 * 15 13 12 17 17 C 1.53300 * 108.38312 * 129.48612 * 16 15 13 18 18 O 1.42965 * 109.21824 * 52.30804 * 17 16 15 19 19 C 1.42959 * 114.16587 * 297.41185 * 18 17 16 20 20 H 1.08997 * 109.55951 * 302.63897 * 19 18 17 21 21 C 1.52996 * 109.51148 * 182.50587 * 19 18 17 22 22 O 1.42899 * 109.47043 * 65.25994 * 21 19 18 23 23 C 1.42905 * 114.00042 * 179.97438 * 22 21 19 24 24 C 1.52999 * 109.47119 * 179.97438 * 23 22 21 25 25 C 1.52993 * 117.50072 * 243.62277 * 24 23 22 26 26 C 1.52994 * 117.49964 * 174.99777 * 24 23 22 27 27 C 1.47150 * 120.98612 * 175.01290 * 15 13 12 28 28 H 0.96996 * 120.00136 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47240 * 59.99578 * 9 7 2 30 30 H 1.08996 * 109.47147 * 299.99641 * 9 7 2 31 31 H 1.09000 * 109.47030 * 60.00040 * 10 9 7 32 32 H 1.08996 * 109.47403 * 300.00075 * 10 9 7 33 33 H 1.09000 * 109.47225 * 60.00130 * 11 10 9 34 34 H 1.09004 * 109.46892 * 299.99972 * 11 10 9 35 35 H 0.97000 * 119.99983 * 0.02562 * 12 11 10 36 36 H 1.09001 * 109.68795 * 249.21568 * 16 15 13 37 37 H 1.09005 * 109.68279 * 9.73141 * 16 15 13 38 38 H 1.09000 * 109.51093 * 172.22555 * 17 16 15 39 39 H 1.08993 * 109.51410 * 292.38115 * 17 16 15 40 40 H 1.09000 * 109.47318 * 305.25495 * 21 19 18 41 41 H 1.09004 * 109.47038 * 185.25718 * 21 19 18 42 42 H 1.08996 * 109.46846 * 300.00109 * 23 22 21 43 43 H 1.08998 * 109.47107 * 60.00067 * 23 22 21 44 44 H 1.09001 * 115.54760 * 29.33226 * 24 23 22 45 45 H 1.09000 * 117.49958 * 359.97438 * 25 24 23 46 46 H 1.08999 * 117.50033 * 145.02109 * 25 24 23 47 47 H 1.08997 * 117.50255 * 214.97841 * 26 24 23 48 48 H 1.09005 * 117.50017 * 359.97438 * 26 24 23 49 49 H 1.09002 * 109.68174 * 110.78769 * 27 15 13 50 50 H 1.09001 * 109.67865 * 350.23448 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4324 -6.1006 0.0005 13 6 1.9832 -7.3713 0.0006 14 8 0.7917 -7.5949 -0.0931 15 7 2.8546 -8.3941 0.1046 16 6 4.3065 -8.1548 0.1091 17 6 4.9137 -8.8882 1.3105 18 8 4.4957 -10.2552 1.2877 19 6 3.0833 -10.4375 1.4126 20 1 2.7358 -9.9743 2.3360 21 6 2.7613 -11.9330 1.4383 22 8 3.3181 -12.5199 2.6162 23 6 3.0728 -13.9224 2.7384 24 6 3.7113 -14.4413 4.0284 25 6 4.8370 -15.4688 3.8958 26 6 3.4603 -15.9035 4.4023 27 6 2.3823 -9.7833 0.2164 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5570 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8720 -3.6043 0.8905 32 1 2.8721 -3.6043 -0.8894 33 1 0.8540 -5.0446 -0.8903 34 1 0.8534 -5.0451 0.8897 35 1 3.3861 -5.9233 0.0016 36 1 4.7444 -8.5360 -0.8134 37 1 4.5021 -7.0858 0.1938 38 1 6.0012 -8.8392 1.2554 39 1 4.5736 -8.4188 2.2335 40 1 3.1882 -12.4118 0.5570 41 1 1.6801 -12.0719 1.4393 42 1 1.9982 -14.1022 2.7666 43 1 3.5060 -14.4428 1.8842 44 1 3.7820 -13.7189 4.8415 45 1 5.1226 -15.7755 2.8895 46 1 5.6488 -15.4225 4.6217 47 1 3.3664 -16.1431 5.4615 48 1 2.8400 -16.4957 3.7296 49 1 2.6264 -10.3285 -0.6953 50 1 1.3037 -9.7928 0.3728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362744708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:24 Heat of formation + Delta-G solvation = -97.596653 kcal Electronic energy + Delta-G solvation = -27187.488998 eV Core-core repulsion = 23215.832250 eV Total energy + Delta-G solvation = -3971.656748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.65419 -39.10629 -38.42490 -36.85300 -35.54030 -34.83850 -33.40339 -32.57944 -31.08382 -28.93677 -27.78051 -26.67948 -25.35984 -23.67637 -22.99629 -22.82869 -21.74309 -20.96297 -20.64971 -19.65847 -18.24108 -17.41174 -17.10564 -16.57550 -16.33795 -15.92588 -15.91994 -15.58086 -15.19329 -15.09032 -14.63814 -14.54522 -14.46898 -14.27606 -13.90930 -13.39989 -13.24896 -12.97861 -12.57313 -12.28340 -12.02224 -11.99544 -11.81420 -11.73777 -11.66149 -11.40470 -11.07233 -10.93338 -10.86186 -10.73742 -10.67081 -10.57913 -10.38938 -10.10912 -9.89050 -9.88506 -9.46533 -9.12442 -8.98429 -8.53576 -8.38405 -6.02819 -4.05929 2.43045 3.01927 3.23906 3.29196 3.32347 3.36793 3.40113 3.44916 3.87778 4.28898 4.41714 4.43265 4.43671 4.51275 4.61122 4.68106 4.76807 4.84084 4.86731 4.88801 5.02677 5.04760 5.12901 5.17242 5.20827 5.31171 5.33109 5.39703 5.43038 5.43362 5.62381 5.64122 5.66664 5.75247 5.78561 6.14428 6.16636 6.47980 6.59520 6.70908 6.76759 6.85184 6.93637 6.99682 7.62824 7.75135 7.95865 7.96576 8.36750 8.62636 9.00916 9.58358 11.08478 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.029655 B = 0.001626 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.949009 B =17220.274581 C =17399.804533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.133 3.867 12 N -0.740 5.740 13 C 0.707 3.293 14 O -0.588 6.588 15 N -0.637 5.637 16 C 0.075 3.925 17 C 0.049 3.951 18 O -0.367 6.367 19 C 0.080 3.920 20 H 0.073 0.927 21 C 0.074 3.926 22 O -0.376 6.376 23 C 0.093 3.907 24 C -0.153 4.153 25 C -0.177 4.177 26 C -0.175 4.175 27 C 0.107 3.893 28 H 0.261 0.739 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.393 0.607 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.114 0.886 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.074 0.926 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.571 -30.819 4.551 32.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.010 3.990 12 N -0.396 5.396 13 C 0.408 3.592 14 O -0.465 6.465 15 N -0.376 5.376 16 C -0.049 4.049 17 C -0.029 4.029 18 O -0.286 6.286 19 C 0.021 3.979 20 H 0.091 0.909 21 C -0.003 4.003 22 O -0.295 6.295 23 C 0.017 3.983 24 C -0.171 4.171 25 C -0.214 4.214 26 C -0.212 4.212 27 C -0.017 4.017 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.229 0.771 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.132 0.868 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.116 0.884 48 H 0.113 0.887 49 H 0.092 0.908 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.735 -30.862 4.604 32.687 hybrid contribution 0.667 1.201 -0.190 1.387 sum 10.402 -29.661 4.414 31.740 Atomic orbital electron populations 1.69974 1.06055 1.26580 1.50601 1.25030 0.94851 0.99303 0.95269 0.86529 0.80035 0.83766 0.77603 1.19769 1.21000 1.21007 1.21237 0.93021 0.90921 1.50874 0.92596 1.19034 0.93851 0.90793 0.97734 1.21895 0.99820 0.93301 1.00816 1.21555 0.91308 0.84107 1.01985 1.45553 1.10569 1.04379 1.79134 1.15860 0.84750 0.80722 0.77849 1.90913 1.14183 1.83696 1.57757 1.47214 1.05513 1.05860 1.79048 1.22366 0.80913 1.01516 1.00060 1.22977 1.00274 0.82603 0.97031 1.88010 1.21518 1.24792 1.94259 1.22469 0.82559 0.94645 0.98253 0.90889 1.22384 0.97720 0.91616 0.88627 1.87930 1.77679 1.21639 1.42281 1.22002 0.98681 0.81843 0.95823 1.22126 1.03132 0.92485 0.99382 1.23069 0.92231 1.03225 1.02843 1.22979 0.99744 0.96263 1.02200 1.21941 1.01111 0.80862 0.97836 0.92978 0.96202 0.96212 0.92777 0.92752 0.91765 0.91940 0.77134 0.90370 0.89170 0.87415 0.92353 0.92085 0.91300 0.92843 0.93113 0.86805 0.88656 0.88571 0.88369 0.88661 0.90827 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.13 2.38 5.68 -4.04 -0.02 2.36 16 12 N -0.74 -10.96 5.47 -65.22 -0.36 -11.32 16 13 C 0.71 11.11 8.31 -86.92 -0.72 10.39 16 14 O -0.59 -11.52 15.85 5.29 0.08 -11.44 16 15 N -0.64 -7.60 3.02 -178.00 -0.54 -8.14 16 16 C 0.08 0.65 6.63 -3.53 -0.02 0.63 16 17 C 0.05 0.41 6.99 37.31 0.26 0.67 16 18 O -0.37 -3.83 10.35 -39.71 -0.41 -4.24 16 19 C 0.08 0.78 3.06 -26.58 -0.08 0.69 16 20 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 21 C 0.07 0.60 5.60 37.16 0.21 0.81 16 22 O -0.38 -3.72 10.31 -39.71 -0.41 -4.13 16 23 C 0.09 0.68 6.22 37.16 0.23 0.91 16 24 C -0.15 -1.07 6.06 -90.63 -0.55 -1.62 16 25 C -0.18 -1.04 10.18 -26.74 -0.27 -1.31 16 26 C -0.17 -0.92 10.25 -26.74 -0.27 -1.19 16 27 C 0.11 1.10 5.91 -3.53 -0.02 1.08 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.39 4.69 5.98 -40.82 -0.24 4.44 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.68 5.66 -51.93 -0.29 0.38 16 38 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.05 0.33 7.87 -51.93 -0.41 -0.08 16 44 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.09 0.52 8.03 -51.93 -0.42 0.10 16 46 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.10 1.19 7.12 -51.93 -0.37 0.82 16 LS Contribution 406.11 15.07 6.12 6.12 Total: -1.00 -34.36 406.11 -10.64 -45.00 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -8.88 Total: -0.32 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.96 Total: -1.91 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.16 Total: -45.46 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.74 Total: -19.81 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.36 -10.64 -45.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362744708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.597 kcal (2) G-P(sol) polarization free energy of solvation -34.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds