Wall clock time and date at job start Tue Mar 31 2020 14:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48495 * 109.47528 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47031 * 299.99853 * 3 2 1 6 6 H 1.48500 * 109.47201 * 59.99439 * 3 2 1 7 7 C 1.37884 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99656 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99623 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46913 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46992 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47018 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00121 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99667 * 5.08442 * 13 12 11 15 15 N 1.34770 * 120.00272 * 185.08432 * 13 12 11 16 16 C 1.47152 * 120.98104 * 354.98490 * 15 13 12 17 17 C 1.53300 * 108.38312 * 129.48612 * 16 15 13 18 18 O 1.42965 * 109.21824 * 52.30804 * 17 16 15 19 19 C 1.42959 * 114.16587 * 297.41185 * 18 17 16 20 20 H 1.08997 * 109.55951 * 302.63897 * 19 18 17 21 21 C 1.52996 * 109.51148 * 182.50587 * 19 18 17 22 22 O 1.42899 * 109.47043 * 65.25994 * 21 19 18 23 23 C 1.42905 * 114.00042 * 179.97438 * 22 21 19 24 24 C 1.52999 * 109.47119 * 179.97438 * 23 22 21 25 25 C 1.52993 * 117.50072 * 243.62277 * 24 23 22 26 26 C 1.52994 * 117.49964 * 174.99777 * 24 23 22 27 27 C 1.47150 * 120.98612 * 175.01290 * 15 13 12 28 28 H 0.96996 * 120.00136 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47240 * 59.99578 * 9 7 2 30 30 H 1.08996 * 109.47147 * 299.99641 * 9 7 2 31 31 H 1.09000 * 109.47030 * 60.00040 * 10 9 7 32 32 H 1.08996 * 109.47403 * 300.00075 * 10 9 7 33 33 H 1.09000 * 109.47225 * 60.00130 * 11 10 9 34 34 H 1.09004 * 109.46892 * 299.99972 * 11 10 9 35 35 H 0.97000 * 119.99983 * 0.02562 * 12 11 10 36 36 H 1.09001 * 109.68795 * 249.21568 * 16 15 13 37 37 H 1.09005 * 109.68279 * 9.73141 * 16 15 13 38 38 H 1.09000 * 109.51093 * 172.22555 * 17 16 15 39 39 H 1.08993 * 109.51410 * 292.38115 * 17 16 15 40 40 H 1.09000 * 109.47318 * 305.25495 * 21 19 18 41 41 H 1.09004 * 109.47038 * 185.25718 * 21 19 18 42 42 H 1.08996 * 109.46846 * 300.00109 * 23 22 21 43 43 H 1.08998 * 109.47107 * 60.00067 * 23 22 21 44 44 H 1.09001 * 115.54760 * 29.33226 * 24 23 22 45 45 H 1.09000 * 117.49958 * 359.97438 * 25 24 23 46 46 H 1.08999 * 117.50033 * 145.02109 * 25 24 23 47 47 H 1.08997 * 117.50255 * 214.97841 * 26 24 23 48 48 H 1.09005 * 117.50017 * 359.97438 * 26 24 23 49 49 H 1.09002 * 109.68174 * 110.78769 * 27 15 13 50 50 H 1.09001 * 109.67865 * 350.23448 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4324 -6.1006 0.0005 13 6 1.9832 -7.3713 0.0006 14 8 0.7917 -7.5949 -0.0931 15 7 2.8546 -8.3941 0.1046 16 6 4.3065 -8.1548 0.1091 17 6 4.9137 -8.8882 1.3105 18 8 4.4957 -10.2552 1.2877 19 6 3.0833 -10.4375 1.4126 20 1 2.7358 -9.9743 2.3360 21 6 2.7613 -11.9330 1.4383 22 8 3.3181 -12.5199 2.6162 23 6 3.0728 -13.9224 2.7384 24 6 3.7113 -14.4413 4.0284 25 6 4.8370 -15.4688 3.8958 26 6 3.4603 -15.9035 4.4023 27 6 2.3823 -9.7833 0.2164 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5570 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8720 -3.6043 0.8905 32 1 2.8721 -3.6043 -0.8894 33 1 0.8540 -5.0446 -0.8903 34 1 0.8534 -5.0451 0.8897 35 1 3.3861 -5.9233 0.0016 36 1 4.7444 -8.5360 -0.8134 37 1 4.5021 -7.0858 0.1938 38 1 6.0012 -8.8392 1.2554 39 1 4.5736 -8.4188 2.2335 40 1 3.1882 -12.4118 0.5570 41 1 1.6801 -12.0719 1.4393 42 1 1.9982 -14.1022 2.7666 43 1 3.5060 -14.4428 1.8842 44 1 3.7820 -13.7189 4.8415 45 1 5.1226 -15.7755 2.8895 46 1 5.6488 -15.4225 4.6217 47 1 3.3664 -16.1431 5.4615 48 1 2.8400 -16.4957 3.7296 49 1 2.6264 -10.3285 -0.6953 50 1 1.3037 -9.7928 0.3728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362744708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:24 Heat of formation + Delta-G solvation = -119.948905 kcal Electronic energy + Delta-G solvation = -27188.458264 eV Core-core repulsion = 23215.832250 eV Total energy + Delta-G solvation = -3972.626015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.67693 -39.97685 -39.11696 -37.41842 -37.05657 -35.87097 -35.20282 -33.53717 -32.73103 -29.71848 -28.93318 -27.90330 -26.35018 -24.80947 -24.32662 -23.24865 -22.59522 -22.32242 -21.51858 -20.79535 -19.35478 -18.51188 -18.10698 -17.77426 -17.34738 -17.04538 -16.80097 -16.46948 -16.38147 -16.01218 -15.83785 -15.76057 -15.38027 -15.23719 -14.96682 -14.53053 -14.29539 -13.89547 -13.73700 -13.60403 -13.46790 -13.25411 -12.78287 -12.76346 -12.51875 -12.39614 -12.34600 -12.27969 -11.99468 -11.87890 -11.68596 -11.59249 -11.36458 -11.33413 -11.23911 -11.14138 -11.08786 -10.55540 -10.45891 -10.26138 -9.54332 -8.18983 -6.30340 1.39154 1.42362 1.42977 1.55743 1.99092 2.41847 2.45090 2.65561 2.81726 2.94511 3.15087 3.66549 3.79007 3.85007 3.94881 3.96373 3.99833 4.08334 4.15075 4.21738 4.24886 4.28393 4.33674 4.36002 4.44555 4.53965 4.54784 4.57377 4.68465 4.73775 4.76302 4.78124 4.89879 4.94825 4.96438 5.01697 5.15933 5.23196 5.24476 5.28509 5.42614 5.53019 5.71134 5.76499 5.84813 6.06385 6.22858 6.23781 6.82994 6.88022 7.39244 7.42343 8.93315 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.029655 B = 0.001626 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.949009 B =17220.274581 C =17399.804533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.149 3.851 12 N -0.729 5.729 13 C 0.703 3.297 14 O -0.633 6.633 15 N -0.632 5.632 16 C 0.072 3.928 17 C 0.048 3.952 18 O -0.379 6.379 19 C 0.086 3.914 20 H 0.056 0.944 21 C 0.074 3.926 22 O -0.402 6.402 23 C 0.091 3.909 24 C -0.172 4.172 25 C -0.179 4.179 26 C -0.163 4.163 27 C 0.106 3.894 28 H 0.263 0.737 29 H -0.007 1.007 30 H -0.007 1.007 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.409 0.591 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.135 0.865 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.106 0.894 49 H 0.092 0.908 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.108 -31.636 4.291 34.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.024 3.976 12 N -0.387 5.387 13 C 0.404 3.596 14 O -0.514 6.514 15 N -0.370 5.370 16 C -0.050 4.050 17 C -0.030 4.030 18 O -0.298 6.298 19 C 0.027 3.973 20 H 0.074 0.926 21 C -0.003 4.003 22 O -0.321 6.321 23 C 0.015 3.985 24 C -0.191 4.191 25 C -0.216 4.216 26 C -0.200 4.200 27 C -0.017 4.017 28 H 0.071 0.929 29 H 0.011 0.989 30 H 0.011 0.989 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.248 0.752 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.153 0.847 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.123 0.877 48 H 0.124 0.876 49 H 0.110 0.890 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.347 -31.715 4.349 34.310 hybrid contribution -0.111 1.389 -0.089 1.396 sum 12.236 -30.326 4.260 32.978 Atomic orbital electron populations 1.70118 1.07948 1.27695 1.51756 1.26016 0.95724 1.03525 0.94798 0.85368 0.79243 0.78662 0.77562 1.18128 1.20646 1.20665 1.21709 0.93784 0.91945 1.50338 0.91445 1.18949 0.94461 0.92925 0.95157 1.21591 0.98467 0.91575 1.02173 1.21122 0.91333 0.84553 1.00579 1.45201 1.10916 1.03509 1.79065 1.16003 0.84577 0.81352 0.77661 1.90883 1.16389 1.84424 1.59742 1.47273 1.06609 1.05524 1.77628 1.22637 0.78608 1.02658 1.01132 1.23138 1.01789 0.81596 0.96429 1.88004 1.21596 1.26017 1.94179 1.22379 0.82339 0.95596 0.96964 0.92631 1.22442 0.98660 0.90536 0.88673 1.87889 1.78161 1.23091 1.42987 1.22129 0.99411 0.80699 0.96272 1.22140 1.04664 0.93145 0.99109 1.23148 0.92489 1.02605 1.03311 1.23065 0.99262 0.94788 1.02891 1.22034 1.00469 0.80213 0.99012 0.92854 0.98902 0.98884 0.91271 0.91299 0.93388 0.93418 0.75161 0.88609 0.87818 0.84689 0.93097 0.90883 0.89863 0.91919 0.92176 0.88229 0.88131 0.88349 0.87692 0.87561 0.89018 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 3 Si 0.97 43.59 29.54 68.60 2.03 45.61 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.54 -29.92 9.11 25.60 0.23 -29.69 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.82 5.27 30.60 0.16 -3.66 16 11 C 0.15 5.33 5.68 86.38 0.49 5.82 16 12 N -0.73 -20.86 5.47 -478.53 -2.62 -23.47 16 13 C 0.70 21.80 8.31 179.06 1.49 23.28 16 14 O -0.63 -25.32 15.85 -3.99 -0.06 -25.39 16 15 N -0.63 -14.33 3.02 -835.33 -2.52 -16.85 16 16 C 0.07 1.07 6.63 86.36 0.57 1.64 16 17 C 0.05 0.69 6.99 72.08 0.50 1.19 16 18 O -0.38 -7.29 10.35 -144.69 -1.50 -8.79 16 19 C 0.09 1.61 3.06 30.69 0.09 1.71 16 20 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 21 C 0.07 1.13 5.60 71.98 0.40 1.53 16 22 O -0.40 -7.70 10.31 -144.69 -1.49 -9.19 16 23 C 0.09 1.24 6.22 71.98 0.45 1.69 16 24 C -0.17 -2.30 6.06 -10.80 -0.07 -2.37 16 25 C -0.18 -1.90 10.18 30.59 0.31 -1.59 16 26 C -0.16 -1.49 10.25 30.59 0.31 -1.18 16 27 C 0.11 2.11 5.91 86.36 0.51 2.62 16 28 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 29 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.41 8.82 5.98 -92.71 -0.55 8.27 16 36 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 1.24 5.66 -2.38 -0.01 1.23 16 38 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.68 7.87 -2.39 -0.02 0.67 16 44 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.10 0.95 8.03 -2.39 -0.02 0.93 16 46 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 49 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.09 2.09 7.12 -2.39 -0.02 2.07 16 Total: -1.00 -75.30 406.11 0.55 -74.75 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.35 Total: 17.41 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 6.07 Total: 2.63 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -4.86 Total: -97.03 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -3.05 Total: -43.37 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -75.30 0.55 -74.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362744708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.196 kcal (2) G-P(sol) polarization free energy of solvation -75.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds