Wall clock time and date at job start Tue Mar 31 2020 14:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 119.99576 * 2 1 4 4 H 1.48507 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47251 * 299.99994 * 3 2 1 6 6 H 1.48503 * 109.47325 * 60.00225 * 3 2 1 7 7 C 1.38813 * 120.00378 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99791 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99740 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99712 * 174.37848 * 9 7 2 11 11 C 1.52994 * 110.01936 * 61.55417 * 10 9 7 12 12 N 1.46501 * 109.47078 * 55.26880 * 11 10 9 13 13 C 1.34778 * 120.00046 * 175.52933 * 12 11 10 14 14 O 1.21285 * 120.00075 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00118 * 179.72695 * 13 12 11 16 16 O 1.42897 * 109.47338 * 180.27783 * 15 13 12 17 17 C 1.42897 * 114.00189 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.47275 * 179.97438 * 17 16 15 19 19 H 1.09002 * 109.87020 * 53.99731 * 18 17 16 20 20 C 1.54101 * 109.87788 * 174.99822 * 18 17 16 21 21 C 1.54812 * 104.18798 * 121.45654 * 20 18 17 22 22 C 1.54996 * 102.09034 * 20.87741 * 21 20 18 23 23 O 1.43741 * 109.88261 * 292.82965 * 18 17 16 24 24 C 1.54267 * 110.03359 * 182.94397 * 10 9 7 25 25 C 1.54970 * 104.15898 * 95.75430 * 24 10 9 26 26 C 1.54883 * 102.77638 * 37.88898 * 25 24 10 27 27 C 1.53873 * 110.03411 * 300.16159 * 10 9 7 28 28 H 0.96996 * 120.00731 * 0.02562 * 1 2 3 29 29 H 0.97004 * 120.00196 * 354.37979 * 9 7 2 30 30 H 1.09002 * 109.47011 * 295.27098 * 11 10 9 31 31 H 1.09001 * 109.47708 * 175.27327 * 11 10 9 32 32 H 0.96994 * 120.00288 * 355.53176 * 12 11 10 33 33 H 1.09004 * 109.47359 * 300.27819 * 15 13 12 34 34 H 1.09001 * 109.47186 * 60.27393 * 15 13 12 35 35 H 1.09005 * 109.47318 * 299.99692 * 17 16 15 36 36 H 1.09003 * 109.47480 * 59.99265 * 17 16 15 37 37 H 1.09001 * 110.49231 * 240.12991 * 20 18 17 38 38 H 1.08999 * 110.48928 * 2.78030 * 20 18 17 39 39 H 1.09000 * 110.91136 * 139.07903 * 21 20 18 40 40 H 1.08998 * 110.90739 * 262.64639 * 21 20 18 41 41 H 1.09004 * 110.61583 * 81.48319 * 22 21 20 42 42 H 1.09005 * 110.61851 * 204.47400 * 22 21 20 43 43 H 1.08999 * 110.48864 * 214.40073 * 24 10 9 44 44 H 1.09003 * 110.48572 * 337.04984 * 24 10 9 45 45 H 1.08999 * 110.71863 * 279.57448 * 25 24 10 46 46 H 1.08998 * 110.91978 * 156.30386 * 25 24 10 47 47 H 1.09002 * 110.48423 * 203.40266 * 26 25 24 48 48 H 1.08998 * 110.59727 * 80.81829 * 26 25 24 49 49 H 1.08998 * 110.03149 * 359.95042 * 27 10 9 50 50 H 1.09003 * 110.03417 * 121.33609 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0529 -3.6536 -0.1254 11 6 3.0121 -3.8250 1.0541 12 7 2.2661 -3.7152 2.3102 13 6 2.8914 -3.9236 3.4858 14 8 4.0719 -4.2016 3.5039 15 6 2.1255 -3.8047 4.7781 16 8 3.0020 -4.0626 5.8768 17 6 2.3716 -3.9755 7.1562 18 6 3.3983 -4.2692 8.2519 19 1 4.2616 -3.6138 8.1360 20 6 2.7607 -4.0556 9.6384 21 6 2.9095 -5.4276 10.3399 22 6 4.0587 -6.0825 9.5319 23 8 3.8114 -5.6441 8.1788 24 6 1.0585 -4.8320 -0.1733 25 6 0.8682 -5.1062 -1.6866 26 6 2.2902 -4.8795 -2.2572 27 6 2.8355 -3.6834 -1.4499 28 1 -0.4851 0.8399 -0.0004 29 1 0.3591 -2.3901 0.0821 30 1 3.7765 -3.0489 1.0165 31 1 3.4862 -4.8049 0.9975 32 1 1.3222 -3.4926 2.2958 33 1 1.7176 -2.7978 4.8674 34 1 1.3107 -4.5287 4.7856 35 1 1.9685 -2.9723 7.2952 36 1 1.5621 -4.7033 7.2128 37 1 3.2979 -3.2846 10.1907 38 1 1.7082 -3.7908 9.5376 39 1 3.1916 -5.3016 11.3852 40 1 1.9920 -6.0099 10.2541 41 1 5.0267 -5.7230 9.8811 42 1 4.0046 -7.1691 9.5994 43 1 1.4792 -5.7067 0.3227 44 1 0.1109 -4.5506 0.2862 45 1 0.1606 -4.3998 -2.1206 46 1 0.5420 -6.1320 -1.8583 47 1 2.2407 -4.6331 -3.3179 48 1 2.9116 -5.7610 -2.0998 49 1 2.6735 -2.7566 -2.0002 50 1 3.8989 -3.8191 -1.2523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753670910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:01 Heat of formation + Delta-G solvation = -125.837790 kcal Electronic energy + Delta-G solvation = -28377.510325 eV Core-core repulsion = 24404.628949 eV Total energy + Delta-G solvation = -3972.881376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.81834 -39.38716 -38.24565 -37.04615 -34.03731 -33.28475 -32.46572 -31.11622 -30.64296 -28.64655 -28.28194 -27.04623 -25.24868 -24.04481 -23.07967 -22.32774 -21.29356 -20.49814 -19.79066 -18.59794 -17.26918 -17.18102 -16.77864 -16.45418 -16.13684 -15.86162 -15.53098 -15.33058 -14.83448 -14.50840 -14.13181 -14.09097 -13.93482 -13.69583 -13.24952 -13.13345 -12.82531 -12.53448 -12.30883 -12.08257 -11.77157 -11.74389 -11.59819 -11.53067 -11.41733 -11.02871 -10.99535 -10.84084 -10.67668 -10.57282 -10.49044 -10.33900 -10.05825 -9.85446 -9.82942 -9.69926 -9.66300 -9.31506 -8.94073 -8.40833 -7.03400 -5.82906 -3.11992 3.05439 3.13427 3.39965 3.47980 3.49320 3.62245 4.09529 4.21844 4.52654 4.55606 4.62130 4.87541 4.97359 5.03460 5.09902 5.11232 5.15606 5.24894 5.26411 5.26965 5.31328 5.35575 5.38098 5.44687 5.55998 5.57160 5.67443 5.68261 5.77398 5.78316 5.97576 6.00313 6.11075 6.17148 6.26539 6.34883 6.44362 6.58745 6.63942 6.68970 6.74578 6.84834 6.99338 7.07378 7.18301 7.71812 8.08614 8.35994 8.74135 9.47821 10.01777 10.37590 11.39113 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012483 B = 0.002754 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.452107 B =10163.549228 C =11672.714722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.188 3.812 11 C 0.121 3.879 12 N -0.701 5.701 13 C 0.509 3.491 14 O -0.535 6.535 15 C 0.044 3.956 16 O -0.355 6.355 17 C 0.062 3.938 18 C 0.079 3.921 19 H 0.079 0.921 20 C -0.150 4.150 21 C -0.155 4.155 22 C 0.042 3.958 23 O -0.361 6.361 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.130 4.130 28 H 0.254 0.746 29 H 0.384 0.616 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.403 0.597 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.082 0.918 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.600 -11.712 14.731 18.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.362 4.362 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.096 3.904 11 C -0.005 4.005 12 N -0.353 5.353 13 C 0.294 3.706 14 O -0.412 6.412 15 C -0.036 4.036 16 O -0.273 6.273 17 C -0.015 4.015 18 C 0.021 3.979 19 H 0.097 0.903 20 C -0.188 4.188 21 C -0.193 4.193 22 C -0.035 4.035 23 O -0.280 6.280 24 C -0.160 4.160 25 C -0.157 4.157 26 C -0.158 4.158 27 C -0.170 4.170 28 H 0.064 0.936 29 H 0.218 0.782 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.238 0.762 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.110 0.890 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.101 0.899 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.790 -11.919 14.502 18.856 hybrid contribution -0.637 1.475 0.254 1.627 sum 1.153 -10.444 14.756 18.115 Atomic orbital electron populations 1.69656 1.05010 1.25511 1.57797 1.24700 0.95423 0.97535 1.02919 0.86208 0.79053 0.84414 0.77103 1.20526 1.21945 1.22010 1.19155 0.91072 0.83785 1.42199 0.91172 1.42557 1.06054 0.99505 1.87266 1.20459 0.91045 0.87277 0.91600 1.21937 0.95186 1.00054 0.83301 1.45647 1.14272 1.70201 1.05147 1.20071 0.87829 0.77871 0.84842 1.90690 1.15646 1.47558 1.87333 1.22226 0.92938 1.01798 0.86633 1.88059 1.34808 1.91852 1.12539 1.22761 0.95066 1.00282 0.83434 1.22739 0.96957 0.84968 0.93202 0.90349 1.22943 1.02440 0.98368 0.95012 1.23143 1.00013 0.96120 1.00039 1.23578 0.97265 1.00193 0.82447 1.89038 1.87870 1.25505 1.25549 1.22590 0.99352 0.97619 0.96487 1.22421 0.97309 1.00180 0.95755 1.22303 0.96249 0.98169 0.99110 1.22657 0.98522 0.98856 0.96954 0.93636 0.78172 0.91925 0.92659 0.76172 0.90209 0.90664 0.91843 0.92507 0.90060 0.90078 0.90140 0.90402 0.92154 0.88965 0.91774 0.91559 0.91300 0.92622 0.92472 0.92573 0.89921 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.41 13.07 55.49 0.73 -25.69 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.90 21.94 29.55 -169.99 -5.02 16.91 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.23 -5.90 8.52 -15.06 -0.13 -6.03 16 8 H 0.07 1.83 7.27 -52.49 -0.38 1.45 16 9 N -0.71 -15.75 4.53 -46.20 -0.21 -15.96 16 10 C 0.19 3.41 0.68 -130.71 -0.09 3.32 16 11 C 0.12 2.26 4.04 -4.04 -0.02 2.24 16 12 N -0.70 -12.32 5.23 -60.29 -0.32 -12.63 16 13 C 0.51 9.41 7.91 -10.99 -0.09 9.32 16 14 O -0.54 -12.11 16.50 -14.36 -0.24 -12.35 16 15 C 0.04 0.64 6.42 36.00 0.23 0.87 16 16 O -0.35 -5.73 9.87 -58.40 -0.58 -6.31 16 17 C 0.06 0.71 5.39 37.16 0.20 0.91 16 18 C 0.08 0.87 3.71 -26.16 -0.10 0.78 16 19 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 20 C -0.15 -1.09 6.64 -25.20 -0.17 -1.26 16 21 C -0.16 -1.02 7.15 -24.72 -0.18 -1.20 16 22 C 0.04 0.36 7.72 38.21 0.29 0.66 16 23 O -0.36 -4.73 11.18 -36.85 -0.41 -5.14 16 24 C -0.12 -1.87 5.72 -25.03 -0.14 -2.01 16 25 C -0.12 -1.72 6.91 -24.70 -0.17 -1.89 16 26 C -0.12 -1.76 6.83 -25.08 -0.17 -1.93 16 27 C -0.13 -2.28 5.93 -25.61 -0.15 -2.43 16 28 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 29 H 0.38 9.05 7.44 -40.82 -0.30 8.75 16 30 H 0.06 1.33 7.46 -51.93 -0.39 0.94 16 31 H 0.06 0.99 8.05 -51.93 -0.42 0.58 16 32 H 0.40 6.66 7.99 -40.82 -0.33 6.34 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.51 7.70 -51.93 -0.40 0.11 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.91 7.79 -51.93 -0.40 0.51 16 44 H 0.07 1.01 7.72 -51.93 -0.40 0.61 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.08 1.67 7.36 -51.93 -0.38 1.29 16 50 H 0.05 0.87 7.67 -51.93 -0.40 0.47 16 LS Contribution 399.05 15.07 6.01 6.01 Total: -1.00 -32.79 399.05 -9.66 -42.44 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -8.86 Total: 11.72 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -0.77 Total: 0.99 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.20 Total: -54.28 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -1.23 Total: -23.80 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.79 -9.66 -42.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.394 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds