Wall clock time and date at job start Tue Mar 31 2020 14:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99789 * 2 1 4 4 H 1.48497 * 109.46986 * 270.00096 * 3 2 1 5 5 H 1.48501 * 109.46940 * 30.00055 * 3 2 1 6 6 H 1.48495 * 109.46868 * 150.00167 * 3 2 1 7 7 C 1.38814 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99461 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00230 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99810 * 174.61147 * 9 7 2 11 11 C 1.53006 * 110.01441 * 301.52580 * 10 9 7 12 12 N 1.46507 * 109.46905 * 303.89790 * 11 10 9 13 13 C 1.34769 * 119.99664 * 175.12891 * 12 11 10 14 14 O 1.21286 * 120.00496 * 0.02562 * 13 12 11 15 15 C 1.50695 * 120.00177 * 180.02562 * 13 12 11 16 16 O 1.42903 * 109.47571 * 180.02562 * 15 13 12 17 17 C 1.42899 * 114.00244 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47335 * 179.97438 * 17 16 15 19 19 H 1.09002 * 110.32997 * 305.70429 * 18 17 16 20 20 C 1.54479 * 110.37492 * 183.44802 * 18 17 16 21 21 C 1.54504 * 104.06286 * 217.19062 * 20 18 17 22 22 C 1.54480 * 104.06587 * 0.02562 * 21 20 18 23 23 O 1.44430 * 110.37059 * 67.94987 * 18 17 16 24 24 C 1.54266 * 110.02884 * 62.91474 * 10 9 7 25 25 C 1.54968 * 104.15685 * 95.75698 * 24 10 9 26 26 C 1.54884 * 102.77910 * 37.88662 * 25 24 10 27 27 C 1.53867 * 110.02859 * 180.13243 * 10 9 7 28 28 H 0.97000 * 120.00254 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99669 * 354.61457 * 9 7 2 30 30 H 1.08996 * 109.46716 * 183.90562 * 11 10 9 31 31 H 1.08991 * 109.47420 * 63.90008 * 11 10 9 32 32 H 0.97001 * 119.99805 * 355.12942 * 12 11 10 33 33 H 1.09001 * 109.47167 * 299.99900 * 15 13 12 34 34 H 1.08999 * 109.47439 * 60.00022 * 15 13 12 35 35 H 1.09000 * 109.46786 * 300.00163 * 17 16 15 36 36 H 1.09004 * 109.47229 * 59.99607 * 17 16 15 37 37 H 1.09007 * 110.50748 * 335.83418 * 20 18 17 38 38 H 1.08995 * 110.50759 * 98.54387 * 20 18 17 39 39 H 1.08999 * 110.51197 * 118.64328 * 21 20 18 40 40 H 1.09004 * 110.51087 * 241.35055 * 21 20 18 41 41 H 1.08994 * 110.37423 * 142.81420 * 22 21 20 42 42 H 1.09007 * 110.36986 * 265.03786 * 22 21 20 43 43 H 1.09008 * 110.48213 * 214.40055 * 24 10 9 44 44 H 1.08994 * 110.49108 * 337.04127 * 24 10 9 45 45 H 1.08996 * 110.71573 * 279.56638 * 25 24 10 46 46 H 1.09004 * 110.91916 * 156.29270 * 25 24 10 47 47 H 1.09001 * 110.48391 * 203.40960 * 26 25 24 48 48 H 1.08994 * 110.60569 * 80.81683 * 26 25 24 49 49 H 1.09000 * 110.03921 * 359.95617 * 27 10 9 50 50 H 1.09015 * 110.03108 * 121.33482 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0534 -3.6539 -0.1213 11 6 2.8639 -3.6713 -1.4189 12 7 1.9709 -3.4329 -2.5557 13 6 2.4796 -3.3066 -3.7972 14 8 3.6767 -3.3908 -3.9737 15 6 1.5613 -3.0607 -4.9665 16 8 2.3322 -2.9647 -6.1659 17 6 1.5530 -2.7302 -7.3405 18 6 2.4770 -2.6452 -8.5570 19 1 3.2528 -1.8975 -8.3918 20 6 1.6649 -2.3062 -9.8266 21 6 2.3454 -3.1340 -10.9397 22 6 3.4877 -3.8758 -10.2108 23 8 3.0703 -3.9337 -8.8287 24 6 2.9905 -3.8412 1.0897 25 6 2.1720 -4.7186 2.0703 26 6 1.4371 -5.6980 1.1218 27 6 1.0657 -4.8336 -0.1008 28 1 -0.4850 0.8400 0.0004 29 1 0.3588 -2.3899 0.0769 30 1 3.3460 -4.6422 -1.5331 31 1 3.6233 -2.8904 -1.3835 32 1 1.0135 -3.3659 -2.4146 33 1 0.8554 -3.8867 -5.0540 34 1 1.0148 -2.1307 -4.8100 35 1 0.8463 -3.5488 -7.4771 36 1 1.0070 -1.7930 -7.2332 37 1 0.6247 -2.6094 -9.7069 38 1 1.7302 -1.2411 -10.0486 39 1 1.6417 -3.8464 -11.3703 40 1 2.7470 -2.4781 -11.7121 41 1 3.6059 -4.8811 -10.6150 42 1 4.4204 -3.3189 -10.3018 43 1 3.9037 -4.3551 0.7894 44 1 3.2251 -2.8782 1.5430 45 1 1.4584 -4.1115 2.6272 46 1 2.8299 -5.2599 2.7502 47 1 0.5387 -6.0895 1.5992 48 1 2.0970 -6.5135 0.8261 49 1 0.0450 -4.4644 -0.0010 50 1 1.1632 -5.4182 -1.0158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753670911.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:06 Heat of formation + Delta-G solvation = -125.245829 kcal Electronic energy + Delta-G solvation = -28448.052976 eV Core-core repulsion = 24475.197269 eV Total energy + Delta-G solvation = -3972.855706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.75172 -39.35876 -38.24128 -37.02785 -34.01263 -33.27986 -32.39954 -31.10649 -30.63584 -28.64346 -28.23026 -27.02870 -25.29044 -24.12462 -23.06671 -22.19028 -21.27779 -20.53824 -19.68263 -18.60000 -17.20918 -17.05118 -16.83441 -16.49140 -16.02700 -15.89236 -15.52350 -15.31796 -14.82725 -14.61981 -14.12903 -14.05302 -13.95545 -13.65414 -13.32292 -12.94254 -12.79117 -12.55507 -12.26305 -12.06232 -11.78864 -11.73274 -11.46675 -11.45433 -11.40494 -11.09515 -10.90677 -10.77613 -10.72238 -10.63384 -10.50776 -10.23027 -10.12990 -9.92351 -9.85409 -9.67385 -9.64524 -9.29281 -8.90845 -8.37666 -7.01400 -5.81465 -3.10085 3.08364 3.17704 3.42300 3.48502 3.49889 3.67135 4.09501 4.30320 4.55792 4.57957 4.64781 4.91061 4.99274 5.06298 5.11040 5.11991 5.16765 5.23908 5.27128 5.29994 5.34082 5.41298 5.43188 5.49875 5.56137 5.59366 5.68021 5.69500 5.76988 5.78854 5.94908 5.95991 6.09670 6.19324 6.27383 6.32009 6.44883 6.57313 6.62296 6.64508 6.78107 6.83603 7.01027 7.05179 7.17969 7.71251 8.11049 8.37396 8.78286 9.49404 10.03120 10.38631 11.40599 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012176 B = 0.002864 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.055602 B = 9772.718255 C =11346.901137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.009 4.009 3 Si 0.901 3.099 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.230 4.230 8 H 0.070 0.930 9 N -0.711 5.711 10 C 0.189 3.811 11 C 0.123 3.877 12 N -0.699 5.699 13 C 0.511 3.489 14 O -0.535 6.535 15 C 0.044 3.956 16 O -0.355 6.355 17 C 0.066 3.934 18 C 0.077 3.923 19 H 0.079 0.921 20 C -0.149 4.149 21 C -0.154 4.154 22 C 0.041 3.959 23 O -0.360 6.360 24 C -0.131 4.131 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.126 4.126 28 H 0.254 0.746 29 H 0.384 0.616 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.401 0.599 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.059 0.941 49 H 0.068 0.932 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.697 -9.360 -14.706 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.205 4.205 3 Si 0.732 3.268 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.362 4.362 8 H 0.088 0.912 9 N -0.352 5.352 10 C 0.096 3.904 11 C -0.003 4.003 12 N -0.351 5.351 13 C 0.296 3.704 14 O -0.412 6.412 15 C -0.036 4.036 16 O -0.273 6.273 17 C -0.011 4.011 18 C 0.020 3.980 19 H 0.097 0.903 20 C -0.186 4.186 21 C -0.192 4.192 22 C -0.036 4.036 23 O -0.279 6.279 24 C -0.172 4.172 25 C -0.154 4.154 26 C -0.158 4.158 27 C -0.164 4.164 28 H 0.064 0.936 29 H 0.219 0.781 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.236 0.764 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.498 -9.460 -14.689 17.479 hybrid contribution -0.668 1.379 -0.103 1.536 sum -0.170 -8.081 -14.792 16.857 Atomic orbital electron populations 1.69650 1.04986 1.25570 1.57902 1.24673 0.95414 0.97474 1.02953 0.86283 0.78811 0.84151 0.77547 1.21807 1.21906 1.20754 1.19102 0.91045 0.83841 1.42170 0.91250 1.42549 1.05950 0.99459 1.87253 1.20473 0.91335 0.87186 0.91374 1.21874 0.93134 0.99590 0.85735 1.45583 1.11449 1.72194 1.05842 1.20030 0.88972 0.77495 0.83919 1.90686 1.15645 1.49850 1.85024 1.22227 0.93766 1.02254 0.85311 1.88055 1.32384 1.93364 1.13514 1.22597 0.93368 1.00535 0.84606 1.22996 0.95002 0.86956 0.93093 0.90284 1.22923 1.00557 1.01130 0.94030 1.22935 0.98446 0.99469 0.98369 1.23424 0.96610 1.01285 0.82313 1.89284 1.79016 1.32861 1.26710 1.22834 0.97322 1.00289 0.96726 1.22392 0.98770 0.97059 0.97221 1.22298 0.99598 0.97627 0.96305 1.22433 0.99802 0.96340 0.97816 0.93630 0.78137 0.93112 0.91468 0.76383 0.90714 0.90095 0.92378 0.91644 0.90312 0.90020 0.90590 0.90445 0.89114 0.92231 0.92888 0.90269 0.91438 0.92735 0.92397 0.92271 0.91301 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.49 13.06 55.49 0.73 -25.77 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.90 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.23 -5.93 8.39 -15.06 -0.13 -6.06 16 8 H 0.07 1.82 7.22 -52.49 -0.38 1.44 16 9 N -0.71 -15.79 4.76 -46.20 -0.22 -16.01 16 10 C 0.19 3.40 0.68 -130.70 -0.09 3.31 16 11 C 0.12 2.30 3.99 -4.03 -0.02 2.29 16 12 N -0.70 -12.53 5.10 -60.29 -0.31 -12.83 16 13 C 0.51 9.74 7.91 -10.99 -0.09 9.65 16 14 O -0.54 -12.42 16.50 -14.36 -0.24 -12.66 16 15 C 0.04 0.67 6.42 36.00 0.23 0.90 16 16 O -0.36 -5.92 9.88 -57.52 -0.57 -6.49 16 17 C 0.07 0.79 5.54 37.16 0.21 1.00 16 18 C 0.08 0.88 3.57 -25.96 -0.09 0.79 16 19 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 20 C -0.15 -1.16 6.63 -25.17 -0.17 -1.33 16 21 C -0.15 -1.08 7.09 -25.17 -0.18 -1.26 16 22 C 0.04 0.37 7.63 37.93 0.29 0.66 16 23 O -0.36 -4.85 11.35 -35.63 -0.40 -5.26 16 24 C -0.13 -2.27 5.95 -25.03 -0.15 -2.42 16 25 C -0.12 -1.75 6.91 -24.70 -0.17 -1.92 16 26 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 27 C -0.13 -1.90 5.80 -25.61 -0.15 -2.05 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.38 9.11 7.28 -40.82 -0.30 8.81 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.46 7.48 -51.93 -0.39 1.07 16 32 H 0.40 6.68 7.99 -40.82 -0.33 6.35 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.55 7.87 -51.93 -0.41 0.14 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 43 H 0.05 0.84 7.86 -51.92 -0.41 0.43 16 44 H 0.08 1.56 7.12 -51.93 -0.37 1.19 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.07 1.07 7.44 -51.93 -0.39 0.68 16 50 H 0.06 0.86 7.55 -51.92 -0.39 0.47 16 LS Contribution 398.60 15.07 6.01 6.01 Total: -1.00 -32.93 398.60 -9.63 -42.55 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -8.83 Total: 11.88 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.76 Total: 1.43 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.20 Total: -54.61 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -1.21 Total: -24.40 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.93 -9.63 -42.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670911.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.691 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds