Wall clock time and date at job start Tue Mar 31 2020 14:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99803 * 2 1 4 4 O 1.20822 * 120.00282 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99498 * 180.02562 * 3 2 1 6 6 H 1.08995 * 110.01962 * 301.38576 * 5 3 2 7 7 C 1.53875 * 110.03375 * 62.83140 * 5 3 2 8 8 C 1.54265 * 106.59976 * 119.28564 * 7 5 3 9 9 C 1.54890 * 104.19651 * 23.60511 * 8 7 5 10 10 H 1.09004 * 110.91151 * 80.45162 * 9 8 7 11 11 N 1.46498 * 110.75629 * 203.74451 * 9 8 7 12 12 C 1.34774 * 120.00479 * 268.33137 * 11 9 8 13 13 O 1.21592 * 119.99833 * 0.02562 * 12 11 9 14 14 N 1.34772 * 120.00792 * 180.02562 * 12 11 9 15 15 C 1.46496 * 120.00630 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47294 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47143 * 59.99994 * 16 15 14 18 18 C 1.52997 * 109.47232 * 299.99951 * 16 15 14 19 19 C 1.53006 * 109.47127 * 179.97438 * 16 15 14 20 20 C 1.50698 * 109.47184 * 179.97438 * 19 16 15 21 21 H 1.08005 * 119.99819 * 0.02562 * 20 19 16 22 22 C 1.37875 * 120.00046 * 179.97438 * 20 19 16 23 23 N 1.31511 * 120.00192 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99979 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47261 * 60.00310 * 24 22 20 27 27 H 1.48500 * 109.47454 * 300.00304 * 24 22 20 28 28 C 1.54273 * 110.03054 * 179.97438 * 5 3 2 29 29 H 1.09001 * 109.47475 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47383 * 300.00287 * 1 2 3 31 31 H 1.09002 * 109.47337 * 60.00129 * 1 2 3 32 32 H 1.09003 * 110.02920 * 238.56413 * 7 5 3 33 33 H 1.09002 * 110.03383 * 359.94823 * 7 5 3 34 34 H 1.09007 * 110.48293 * 264.92927 * 8 7 5 35 35 H 1.08998 * 110.49218 * 142.28832 * 8 7 5 36 36 H 0.97006 * 119.99928 * 88.33293 * 11 9 8 37 37 H 0.97006 * 119.99615 * 359.97438 * 14 12 11 38 38 H 1.09001 * 109.47059 * 59.99963 * 15 14 12 39 39 H 1.09004 * 109.47074 * 299.99919 * 15 14 12 40 40 H 1.09004 * 109.47059 * 179.97438 * 17 16 15 41 41 H 1.08992 * 109.47060 * 300.00021 * 17 16 15 42 42 H 1.09004 * 109.46930 * 59.99935 * 17 16 15 43 43 H 1.09001 * 109.47375 * 299.99867 * 18 16 15 44 44 H 1.09002 * 109.47045 * 59.99942 * 18 16 15 45 45 H 1.09000 * 109.47140 * 179.97438 * 18 16 15 46 46 H 1.09001 * 109.47002 * 60.00426 * 19 16 15 47 47 H 1.08993 * 109.46955 * 299.99989 * 19 16 15 48 48 H 0.97001 * 119.99934 * 359.97438 * 23 22 20 49 49 H 1.08995 * 110.48383 * 98.42319 * 28 5 3 50 50 H 1.09004 * 110.48411 * 335.78481 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9671 0.7615 0.8734 7 6 4.1267 0.6434 -1.2871 8 6 4.8996 1.7567 -2.0239 9 6 5.2741 2.7623 -0.9069 10 1 6.1514 2.4231 -0.3561 11 7 5.4985 4.0982 -1.4648 12 6 6.7374 4.4720 -1.8414 13 8 7.6689 3.7002 -1.7185 14 7 6.9439 5.7011 -2.3542 15 6 8.2907 6.1075 -2.7630 16 6 8.2490 7.5368 -3.3073 17 6 7.7394 8.4827 -2.2179 18 6 7.3102 7.5958 -4.5139 19 6 9.6557 7.9615 -3.7336 20 6 9.6145 9.3691 -4.2703 21 1 8.6786 9.9071 -4.3035 22 6 10.7717 9.9703 -4.7179 23 7 11.9114 9.3154 -4.6769 24 14 10.7207 11.7154 -5.3824 25 1 12.0861 12.1276 -5.7964 26 1 10.2252 12.6333 -4.3255 27 1 9.8104 11.7725 -6.5543 28 6 4.0182 2.7499 -0.0011 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 4.8003 -0.1765 -1.0378 33 1 3.3102 0.2792 -1.9106 34 1 4.2631 2.2340 -2.7691 35 1 5.7981 1.3529 -2.4905 36 1 4.7552 4.7138 -1.5632 37 1 6.2007 6.3167 -2.4526 38 1 8.6535 5.4339 -3.5394 39 1 8.9597 6.0651 -1.9034 40 1 7.7101 9.5010 -2.6056 41 1 6.7374 8.1803 -1.9138 42 1 8.4083 8.4406 -1.3582 43 1 7.6732 6.9220 -5.2900 44 1 6.3081 7.2934 -4.2098 45 1 7.2801 8.6142 -4.9014 46 1 10.0191 7.2877 -4.5096 47 1 10.3241 7.9195 -2.8737 48 1 11.9379 8.4094 -4.3315 49 1 4.2733 3.0710 1.0087 50 1 3.2393 3.3873 -0.4198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355600708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:51 Heat of formation + Delta-G solvation = -146.875122 kcal Electronic energy + Delta-G solvation = -27876.338181 eV Core-core repulsion = 23902.544558 eV Total energy + Delta-G solvation = -3973.793623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.18782 -40.03427 -38.34444 -37.19258 -36.70580 -33.92098 -33.61537 -32.07931 -29.74180 -28.89469 -27.60120 -26.64776 -26.56796 -25.83082 -23.06272 -22.75218 -21.25120 -20.76031 -20.26264 -18.90889 -18.06828 -17.88236 -17.34181 -16.91555 -16.47987 -16.00165 -15.81392 -15.24034 -14.72376 -14.43599 -14.01992 -14.00755 -13.77562 -13.64468 -13.61898 -13.43673 -12.90355 -12.74425 -12.53142 -12.38068 -12.08857 -11.87474 -11.74013 -11.71172 -11.33430 -11.27145 -11.19261 -11.16030 -11.11837 -11.00555 -10.67404 -10.64233 -10.22549 -10.10021 -10.06292 -9.97724 -9.44109 -9.19948 -8.61001 -8.46292 -8.30388 -6.31660 -4.00692 1.74450 2.19520 2.80908 3.33944 3.44432 3.45923 3.64567 3.92391 4.07839 4.27819 4.47645 4.56612 4.62041 4.66434 4.71055 4.84175 4.96307 5.01070 5.05793 5.09330 5.17366 5.41748 5.42426 5.42850 5.58046 5.60144 5.67114 5.71579 5.83382 5.88478 5.94649 6.12318 6.14838 6.21026 6.34558 6.47295 6.53278 6.57412 6.74719 6.96332 7.00642 7.02435 7.07561 7.27784 7.36599 7.51489 8.14154 8.23596 8.48860 8.74841 8.91599 9.70191 11.08253 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.035187 B = 0.001856 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.560588 B =15085.698392 C =15458.169350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.083 4.083 6 H 0.116 0.884 7 C -0.110 4.110 8 C -0.139 4.139 9 C 0.162 3.838 10 H 0.102 0.898 11 N -0.744 5.744 12 C 0.701 3.299 13 O -0.594 6.594 14 N -0.737 5.737 15 C 0.147 3.853 16 C -0.066 4.066 17 C -0.125 4.125 18 C -0.125 4.125 19 C 0.023 3.977 20 C -0.592 4.592 21 H 0.053 0.947 22 C 0.013 3.987 23 N -0.914 5.914 24 Si 1.066 2.934 25 H -0.284 1.284 26 H -0.289 1.289 27 H -0.289 1.289 28 C -0.123 4.123 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.395 0.605 37 H 0.394 0.606 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.029 0.971 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.029 0.971 45 H 0.067 0.933 46 H 0.009 0.991 47 H 0.009 0.991 48 H 0.269 0.731 49 H 0.082 0.918 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.644 -18.331 9.738 30.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.310 3.690 4 O -0.392 6.392 5 C -0.103 4.103 6 H 0.134 0.866 7 C -0.148 4.148 8 C -0.178 4.178 9 C 0.056 3.944 10 H 0.120 0.880 11 N -0.399 5.399 12 C 0.401 3.599 13 O -0.472 6.472 14 N -0.392 5.392 15 C 0.023 3.977 16 C -0.066 4.066 17 C -0.183 4.183 18 C -0.183 4.183 19 C -0.014 4.014 20 C -0.630 4.630 21 H 0.071 0.929 22 C -0.191 4.191 23 N -0.550 5.550 24 Si 0.895 3.105 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.216 1.216 28 C -0.161 4.161 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.229 0.771 37 H 0.229 0.771 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.048 0.952 45 H 0.086 0.914 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.079 0.921 49 H 0.101 0.899 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.036 -17.525 9.200 28.884 hybrid contribution -1.984 -0.645 0.595 2.169 sum -23.020 -18.170 9.795 30.920 Atomic orbital electron populations 1.23296 0.76200 1.03815 1.02650 1.86513 1.23515 1.33389 1.84029 1.23736 0.92068 0.81303 0.71904 1.90669 1.67087 1.36349 1.45095 1.21640 0.87037 0.99250 1.02381 0.86595 1.22064 1.00191 0.98578 0.93985 1.22838 1.00657 0.95987 0.98311 1.21689 0.97702 0.81702 0.93273 0.87998 1.45063 1.08775 1.16737 1.69315 1.16006 0.82981 0.82533 0.78371 1.90911 1.41656 1.53013 1.61643 1.45349 1.12259 1.14151 1.67417 1.21477 0.81086 0.96065 0.99063 1.20770 0.99648 0.91261 0.94965 1.21743 0.97927 1.00672 0.97925 1.21741 0.96253 1.02751 0.97508 1.19210 0.89421 0.97115 0.95700 1.21974 0.96471 0.99168 1.45365 0.92896 1.25785 0.92502 1.05209 0.95585 1.70770 1.26998 1.13502 1.43761 0.83579 0.75857 0.74842 0.76234 1.20901 1.21564 1.21574 1.22659 0.97896 0.94071 1.01458 0.87982 0.91840 0.91814 0.89772 0.90854 0.91052 0.90193 0.77109 0.77111 0.92116 0.92104 0.91364 0.95152 0.93478 0.93483 0.95166 0.91366 0.97278 0.97268 0.92059 0.89905 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.24 16 2 O -0.36 -2.69 10.54 -39.26 -0.41 -3.11 16 3 C 0.47 3.95 7.00 36.01 0.25 4.21 16 4 O -0.50 -5.62 15.15 -18.75 -0.28 -5.91 16 5 C -0.08 -0.55 3.41 -90.65 -0.31 -0.86 16 6 H 0.12 0.55 8.14 -51.93 -0.42 0.12 16 7 C -0.11 -0.70 6.43 -25.61 -0.16 -0.87 16 8 C -0.14 -1.18 6.51 -25.07 -0.16 -1.34 16 9 C 0.16 1.51 3.27 -65.96 -0.22 1.30 16 10 H 0.10 1.10 7.55 -51.93 -0.39 0.71 16 11 N -0.74 -7.97 5.18 -56.75 -0.29 -8.26 16 12 C 0.70 10.52 8.57 -86.92 -0.74 9.78 16 13 O -0.59 -11.33 15.99 5.28 0.08 -11.24 16 14 N -0.74 -10.73 4.96 -65.23 -0.32 -11.05 16 15 C 0.15 2.62 4.56 -4.05 -0.02 2.60 16 16 C -0.07 -1.26 0.54 -154.51 -0.08 -1.34 16 17 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 18 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 19 C 0.02 0.56 3.35 -27.88 -0.09 0.47 16 20 C -0.59 -15.89 7.65 -34.44 -0.26 -16.15 16 21 H 0.05 1.38 5.68 -52.48 -0.30 1.08 16 22 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 23 N -0.91 -27.75 13.65 55.43 0.76 -27.00 16 24 Si 1.07 24.93 29.90 -169.99 -5.08 19.84 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 28 C -0.12 -0.92 5.77 -25.09 -0.14 -1.06 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.06 0.34 8.13 -51.93 -0.42 -0.09 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.46 7.66 -51.93 -0.40 0.07 16 34 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.40 3.31 8.58 -40.82 -0.35 2.96 16 37 H 0.39 4.84 6.18 -40.82 -0.25 4.58 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16 41 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 45 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16 46 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 47 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 48 H 0.27 8.17 7.22 -40.82 -0.29 7.88 16 49 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.09 0.77 6.75 -51.93 -0.35 0.42 16 LS Contribution 396.15 15.07 5.97 5.97 Total: -1.00 -34.08 396.15 -8.40 -42.48 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -8.43 Total: 3.89 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.38 Total: -5.62 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.14 Total: -46.31 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.61 Total: -20.25 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.08 -8.40 -42.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355600708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.392 kcal (2) G-P(sol) polarization free energy of solvation -34.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds