Wall clock time and date at job start Tue Mar 31 2020 14:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47124 * 2 1 4 4 C 1.52993 * 109.47267 * 120.00205 * 2 1 3 5 5 C 1.52999 * 109.47019 * 174.36855 * 4 2 1 6 6 H 1.08996 * 109.47295 * 53.97321 * 5 4 2 7 7 C 1.52995 * 109.47502 * 293.97097 * 5 4 2 8 8 N 1.46498 * 109.47567 * 175.00144 * 7 5 4 9 9 C 1.34775 * 120.00411 * 179.97438 * 8 7 5 10 10 O 1.21591 * 119.99739 * 4.95840 * 9 8 7 11 11 N 1.34771 * 120.00346 * 184.95664 * 9 8 7 12 12 C 1.46925 * 120.63092 * 174.82008 * 11 9 8 13 13 C 1.53195 * 108.88988 * 126.46209 * 12 11 9 14 14 C 1.53034 * 109.31425 * 54.56549 * 13 12 11 15 15 C 1.50710 * 109.45902 * 178.62843 * 14 13 12 16 16 H 1.07993 * 120.00041 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99627 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00486 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99804 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46658 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47324 * 119.99525 * 19 17 15 22 22 H 1.48496 * 109.46860 * 239.99614 * 19 17 15 23 23 C 1.53043 * 109.53783 * 298.63212 * 14 13 12 24 24 C 1.46962 * 120.65136 * 354.63672 * 11 9 8 25 25 C 1.50701 * 109.47229 * 173.96976 * 5 4 2 26 26 O 1.20826 * 120.00205 * 113.97828 * 25 5 4 27 27 O 1.34231 * 120.00151 * 293.98580 * 25 5 4 28 28 H 1.08995 * 109.47009 * 299.99588 * 1 2 3 29 29 H 1.09001 * 109.47109 * 59.99718 * 1 2 3 30 30 H 1.08998 * 109.46917 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46819 * 240.00671 * 2 1 3 32 32 H 1.09002 * 109.47348 * 185.26982 * 3 2 1 33 33 H 1.09005 * 109.46936 * 305.27537 * 3 2 1 34 34 H 1.09004 * 109.46799 * 65.26519 * 3 2 1 35 35 H 1.09001 * 109.47375 * 54.37079 * 4 2 1 36 36 H 1.09001 * 109.47234 * 294.37038 * 4 2 1 37 37 H 1.09000 * 109.46977 * 54.99737 * 7 5 4 38 38 H 1.09010 * 109.47024 * 295.00107 * 7 5 4 39 39 H 0.97004 * 119.99885 * 359.97438 * 8 7 5 40 40 H 1.08999 * 109.58957 * 6.60853 * 12 11 9 41 41 H 1.09000 * 109.58848 * 246.31627 * 12 11 9 42 42 H 1.09002 * 109.49654 * 174.51769 * 13 12 11 43 43 H 1.08996 * 109.49901 * 294.57769 * 13 12 11 44 44 H 1.09000 * 109.46311 * 58.65247 * 14 13 12 45 45 H 0.96998 * 120.00180 * 180.02562 * 18 17 15 46 46 H 1.09002 * 109.49962 * 181.31801 * 23 14 13 47 47 H 1.09002 * 109.49532 * 301.41655 * 23 14 13 48 48 H 1.08995 * 109.46752 * 113.75509 * 24 11 9 49 49 H 1.09001 * 109.71311 * 353.46689 * 24 11 9 50 50 H 0.96695 * 117.00407 * 185.00289 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5635 -0.8450 1.1803 6 1 4.0012 0.1404 1.0210 7 6 3.9485 -1.7674 0.0220 8 7 5.4065 -1.7918 -0.1191 9 6 5.9780 -2.5429 -1.0811 10 8 5.2827 -3.1288 -1.8884 11 7 7.3202 -2.6446 -1.1485 12 6 7.9548 -3.5474 -2.1184 13 6 8.9716 -2.7528 -2.9441 14 6 9.9532 -2.0533 -2.0012 15 6 10.9754 -1.2978 -2.8109 16 1 10.9297 -1.3152 -3.8898 17 6 11.9694 -0.5853 -2.1743 18 7 12.0253 -0.5645 -0.8605 19 14 13.2360 0.3517 -3.1780 20 1 12.9544 0.1695 -4.6246 21 1 13.1673 1.7956 -2.8380 22 1 14.5933 -0.1655 -2.8692 23 6 9.1916 -1.0762 -1.1026 24 6 8.1774 -1.8517 -0.2560 25 6 4.0797 -1.4206 2.4738 26 8 4.5964 -2.5128 2.4855 27 8 3.9653 -0.7202 3.6132 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1259 1.4440 -0.0944 33 1 1.6016 1.9829 -0.8390 34 1 1.7557 1.9283 0.9334 35 1 1.5968 -1.7157 1.3010 36 1 1.7614 -0.1526 2.1363 37 1 3.5003 -1.3986 -0.9006 38 1 3.5862 -2.7754 0.2244 39 1 5.9605 -1.2672 0.4800 40 1 7.1955 -3.9664 -2.7788 41 1 8.4637 -4.3530 -1.5892 42 1 9.5176 -3.4313 -3.5996 43 1 8.4498 -2.0079 -3.5448 44 1 10.4567 -2.7973 -1.3839 45 1 12.7244 -0.0629 -0.4127 46 1 9.8943 -0.5613 -0.4473 47 1 8.6678 -0.3467 -1.7202 48 1 8.7047 -2.5175 0.4271 49 1 7.5666 -1.1520 0.3144 50 1 4.3766 -1.0966 4.4032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566850708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:25 Heat of formation + Delta-G solvation = -143.689041 kcal Electronic energy + Delta-G solvation = -29074.439246 eV Core-core repulsion = 25100.783782 eV Total energy + Delta-G solvation = -3973.655464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.86849 -39.74043 -37.75323 -36.79890 -36.36153 -34.57708 -33.46796 -31.98849 -30.80321 -29.95317 -27.48698 -26.67655 -25.60783 -24.88566 -22.87741 -22.21489 -21.11272 -20.22266 -20.06538 -18.74888 -18.36742 -17.59232 -17.08859 -16.54882 -16.23572 -15.60031 -15.25408 -15.00906 -14.60141 -14.39982 -14.28746 -13.91170 -13.58875 -13.50476 -13.14505 -13.03129 -12.83475 -12.60609 -12.55979 -12.45111 -12.16212 -12.08348 -11.75811 -11.64112 -11.53571 -11.39459 -11.29420 -10.99575 -10.96140 -10.86012 -10.59759 -10.52116 -10.34797 -10.14444 -9.71874 -9.52667 -9.12685 -8.93632 -8.85300 -8.37132 -7.83727 -6.02719 -4.08532 1.94711 2.71995 3.03444 3.27111 3.35641 3.40073 3.63969 4.16789 4.20407 4.41298 4.44167 4.50656 4.63995 4.81405 4.99977 5.06885 5.26037 5.26594 5.30927 5.39315 5.50150 5.56657 5.57929 5.63362 5.65374 5.74124 5.84831 5.85883 5.98848 5.99656 6.06094 6.12258 6.22287 6.26031 6.30353 6.51741 6.66881 6.71758 6.89961 7.02688 7.16867 7.25061 7.48604 7.64567 7.68342 7.93914 8.04400 8.35583 8.41756 8.95302 9.00366 9.56490 11.02731 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.002760 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.129940 B =10143.237308 C =10241.379832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.152 4.152 4 C -0.102 4.102 5 C -0.095 4.095 6 H 0.118 0.882 7 C 0.153 3.847 8 N -0.747 5.747 9 C 0.710 3.290 10 O -0.605 6.605 11 N -0.618 5.618 12 C 0.130 3.870 13 C -0.123 4.123 14 C 0.049 3.951 15 C -0.509 4.509 16 H 0.055 0.945 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.123 4.123 24 C 0.113 3.887 25 C 0.475 3.525 26 O -0.497 6.497 27 O -0.518 6.518 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.393 0.607 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.027 0.973 45 H 0.259 0.741 46 H 0.103 0.897 47 H 0.038 0.962 48 H 0.060 0.940 49 H 0.053 0.947 50 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.370 2.840 8.544 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.210 4.210 4 C -0.140 4.140 5 C -0.114 4.114 6 H 0.135 0.865 7 C 0.029 3.971 8 N -0.405 5.405 9 C 0.412 3.588 10 O -0.485 6.485 11 N -0.354 5.354 12 C 0.007 3.993 13 C -0.162 4.162 14 C 0.030 3.970 15 C -0.547 4.547 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.161 4.161 24 C -0.010 4.010 25 C 0.316 3.684 26 O -0.383 6.383 27 O -0.330 6.330 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.229 0.771 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.045 0.955 45 H 0.069 0.931 46 H 0.121 0.879 47 H 0.057 0.943 48 H 0.079 0.921 49 H 0.071 0.929 50 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -20.812 2.309 7.757 22.330 hybrid contribution 1.426 0.662 0.521 1.656 sum -19.386 2.971 8.279 21.288 Atomic orbital electron populations 1.21823 0.94730 1.01920 1.01932 1.21227 0.96154 0.96652 0.97982 1.21928 1.01353 0.95625 1.02049 1.21603 0.90518 1.02125 0.99756 1.21464 0.99064 1.01925 0.88971 0.86470 1.21076 0.80693 0.99391 0.95975 1.45122 1.06804 1.51855 1.36766 1.15742 0.82248 0.79634 0.81205 1.90844 1.62079 1.52429 1.43193 1.47376 1.03201 1.45443 1.39380 1.21556 0.95706 0.91309 0.90718 1.22015 0.96747 0.98890 0.98532 1.18628 0.91686 0.93753 0.92919 1.21262 1.10680 1.29776 0.93006 0.92634 1.24968 0.97610 0.96570 0.94905 1.69850 1.33636 1.42414 1.07273 0.86565 0.81457 0.79617 0.80536 1.19826 1.21107 1.21078 1.22015 0.96063 0.98680 0.99372 1.21857 0.92752 0.93836 0.92566 1.23444 0.76011 0.83376 0.85562 1.90806 1.40232 1.20860 1.86391 1.84513 1.73741 1.54507 1.20236 0.92642 0.92415 0.92540 0.90146 0.92328 0.92397 0.92455 0.90755 0.89985 0.89924 0.90841 0.77050 0.90273 0.92532 0.92170 0.92966 0.95459 0.93093 0.87879 0.94300 0.92119 0.92892 0.73067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.19 37.16 0.34 -0.52 16 2 C -0.10 -0.68 2.81 -90.62 -0.25 -0.93 16 3 C -0.15 -0.99 8.84 37.16 0.33 -0.66 16 4 C -0.10 -0.70 4.12 -26.74 -0.11 -0.81 16 5 C -0.09 -0.83 2.22 -91.77 -0.20 -1.03 16 6 H 0.12 0.90 6.44 -51.93 -0.33 0.57 16 7 C 0.15 1.85 4.51 -4.04 -0.02 1.83 16 8 N -0.75 -11.16 4.84 -65.23 -0.32 -11.47 16 9 C 0.71 13.46 8.29 -86.92 -0.72 12.74 16 10 O -0.61 -13.10 15.77 5.29 0.08 -13.01 16 11 N -0.62 -11.83 2.98 -178.47 -0.53 -12.36 16 12 C 0.13 2.51 6.44 -3.71 -0.02 2.48 16 13 C -0.12 -2.60 5.30 -26.61 -0.14 -2.74 16 14 C 0.05 1.17 2.06 -91.73 -0.19 0.98 16 15 C -0.51 -13.63 8.56 -34.44 -0.29 -13.93 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -24.49 11.31 55.43 0.63 -23.87 16 19 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.12 -2.73 5.15 -26.61 -0.14 -2.87 16 24 C 0.11 2.09 6.38 -3.69 -0.02 2.07 16 25 C 0.48 4.81 7.19 36.01 0.26 5.07 16 26 O -0.50 -6.92 16.22 -18.75 -0.30 -7.23 16 27 O -0.52 -3.88 13.40 -39.26 -0.53 -4.40 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.61 6.27 -51.92 -0.33 0.29 16 32 H 0.06 0.41 6.71 -51.93 -0.35 0.06 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 37 H 0.08 0.97 6.28 -51.93 -0.33 0.64 16 38 H 0.07 1.00 7.87 -51.92 -0.41 0.59 16 39 H 0.39 5.41 5.73 -40.82 -0.23 5.17 16 40 H 0.08 1.53 7.00 -51.93 -0.36 1.17 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 46 H 0.10 2.54 6.03 -51.93 -0.31 2.22 16 47 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.05 0.84 5.66 -51.93 -0.29 0.55 16 50 H 0.41 1.62 9.10 45.56 0.41 2.03 16 LS Contribution 390.72 15.07 5.89 5.89 Total: -1.00 -32.78 390.72 -8.95 -41.73 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -7.57 Total: 5.64 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -1.28 Total: 3.20 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: -0.22 Total: -47.70 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.75 Total: -24.64 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.78 -8.95 -41.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566850708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.956 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds