Wall clock time and date at job start Tue Mar 31 2020 15:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47209 * 2 1 4 4 C 1.52999 * 109.47614 * 240.00080 * 2 1 3 5 5 O 1.45208 * 109.47274 * 119.99746 * 2 1 3 6 6 C 1.34635 * 116.99647 * 59.99985 * 5 2 1 7 7 O 1.21514 * 120.00063 * 0.02562 * 6 5 2 8 8 N 1.34773 * 119.99822 * 180.02562 * 6 5 2 9 9 C 1.46500 * 120.00050 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.47197 * 325.00357 * 9 8 6 11 11 C 1.50696 * 109.47324 * 205.00095 * 9 8 6 12 12 O 1.21292 * 119.99879 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00137 * 180.02562 * 11 9 8 14 14 C 1.37105 * 119.99968 * 180.02562 * 13 11 9 15 15 H 1.08004 * 119.99700 * 359.71718 * 14 13 11 16 16 C 1.38942 * 119.99884 * 179.97438 * 14 13 11 17 17 N 1.31411 * 120.00042 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00016 * 179.97438 * 16 14 13 19 19 H 1.48511 * 109.47043 * 90.00180 * 18 16 14 20 20 H 1.48494 * 109.47357 * 209.99845 * 18 16 14 21 21 H 1.48494 * 109.47227 * 330.00363 * 18 16 14 22 22 C 1.53002 * 109.47317 * 85.00003 * 9 8 6 23 23 C 1.52997 * 109.46978 * 59.99868 * 22 9 8 24 24 C 1.53006 * 109.47445 * 180.02562 * 23 22 9 25 25 C 1.52996 * 109.46840 * 60.00155 * 24 23 22 26 26 C 1.53008 * 109.47219 * 300.00340 * 25 24 23 27 27 C 1.52997 * 109.47280 * 60.00059 * 26 25 24 28 28 H 1.08999 * 109.47407 * 300.00274 * 1 2 3 29 29 H 1.09003 * 109.47065 * 60.00273 * 1 2 3 30 30 H 1.09006 * 109.46922 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47682 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46885 * 299.99837 * 3 2 1 33 33 H 1.08999 * 109.47160 * 59.99575 * 3 2 1 34 34 H 1.09006 * 109.46840 * 299.99883 * 4 2 1 35 35 H 1.08994 * 109.46994 * 59.99654 * 4 2 1 36 36 H 1.09000 * 109.47427 * 180.02562 * 4 2 1 37 37 H 0.97002 * 119.99920 * 0.02562 * 8 6 5 38 38 H 0.96999 * 120.00047 * 359.97438 * 13 11 9 39 39 H 0.97005 * 120.00019 * 180.02562 * 17 16 14 40 40 H 1.08992 * 109.47513 * 179.97438 * 22 9 8 41 41 H 1.09001 * 109.47375 * 300.00092 * 23 22 9 42 42 H 1.09002 * 109.47497 * 60.00450 * 23 22 9 43 43 H 1.09001 * 109.46726 * 300.00265 * 24 23 22 44 44 H 1.08996 * 109.47165 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.47368 * 180.02562 * 25 24 23 46 46 H 1.08992 * 109.47549 * 59.99942 * 25 24 23 47 47 H 1.09001 * 109.46630 * 300.00058 * 26 25 24 48 48 H 1.09002 * 109.47288 * 180.02562 * 26 25 24 49 49 H 1.08993 * 109.47194 * 180.02562 * 27 26 25 50 50 H 1.08998 * 109.47076 * 59.99674 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0672 -2.6653 2.4172 9 6 1.6740 -4.0668 2.5832 10 1 0.6653 -4.2095 2.1957 11 6 1.7060 -4.4276 4.0460 12 8 2.0253 -3.5958 4.8690 13 7 1.3798 -5.6746 4.4398 14 6 1.4084 -6.0028 5.7707 15 1 1.6967 -5.2632 6.5031 16 6 1.0716 -7.2882 6.1766 17 7 0.7251 -8.1892 5.2850 18 14 1.1112 -7.7355 7.9898 19 1 -0.2171 -7.4636 8.5959 20 1 1.4367 -9.1768 8.1372 21 1 2.1451 -6.9216 8.6780 22 6 2.6469 -4.9639 1.8153 23 6 4.0629 -4.7636 2.3591 24 6 5.0360 -5.6601 1.5908 25 6 5.0034 -5.2932 0.1058 26 6 3.5873 -5.4935 -0.4381 27 6 2.6143 -4.5969 0.3302 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6768 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1391 36 1 3.1301 -0.7216 -1.2489 37 1 2.6262 -2.2362 3.0838 38 1 1.1241 -6.3398 3.7816 39 1 0.4896 -9.0865 5.5685 40 1 2.3547 -6.0066 1.9391 41 1 4.3555 -3.7208 2.2356 42 1 4.0861 -5.0246 3.4172 43 1 4.7436 -6.7029 1.7139 44 1 6.0446 -5.5177 1.9786 45 1 5.6963 -5.9322 -0.4417 46 1 5.2957 -4.2504 -0.0173 47 1 3.2950 -6.5363 -0.3150 48 1 3.5642 -5.2325 -1.4961 49 1 1.6056 -4.7399 -0.0569 50 1 2.9067 -3.5541 0.2072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073060580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:52 Heat of formation + Delta-G solvation = -147.711284 kcal Electronic energy + Delta-G solvation = -30332.496500 eV Core-core repulsion = 26358.666618 eV Total energy + Delta-G solvation = -3973.829882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.82659 -39.33764 -37.54887 -36.83537 -34.54483 -34.01537 -33.67950 -31.55197 -30.54588 -30.43739 -27.46882 -27.40202 -26.88960 -24.59331 -22.53223 -22.30896 -21.34463 -19.87885 -19.49120 -19.00142 -18.18558 -17.87968 -16.44979 -16.17184 -15.60490 -15.45759 -15.00726 -14.66024 -14.39065 -14.19868 -13.98608 -13.85713 -13.75930 -13.64838 -13.23287 -13.15670 -12.58707 -12.49934 -12.29000 -11.96440 -11.90982 -11.80958 -11.76578 -11.64385 -11.56875 -11.31651 -11.24817 -11.09540 -10.90082 -10.79167 -10.44962 -10.33911 -10.28612 -10.23195 -10.00606 -9.87449 -9.69525 -9.61031 -8.85864 -8.39928 -8.07709 -6.50023 -3.91566 2.37529 3.10003 3.13760 3.23094 3.28277 3.74938 4.09433 4.39560 4.68706 4.72219 4.73761 4.87050 4.91885 5.00143 5.08962 5.20029 5.38278 5.40982 5.47075 5.53359 5.57053 5.61408 5.62687 5.70059 5.75268 5.76778 5.81400 5.82744 5.89961 5.91783 6.00797 6.09346 6.17858 6.27350 6.27975 6.29456 6.35891 6.40711 6.46021 6.52778 6.64678 6.71392 6.75345 6.86050 7.47541 7.80913 7.94031 8.47042 8.68694 9.06696 9.41114 9.89389 10.66775 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013993 B = 0.003819 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.554657 B = 7329.728906 C = 8555.205134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.366 6.366 6 C 0.652 3.348 7 O -0.571 6.571 8 N -0.680 5.680 9 C 0.157 3.843 10 H 0.101 0.899 11 C 0.436 3.564 12 O -0.592 6.592 13 N -0.547 5.547 14 C -0.303 4.303 15 H 0.105 0.895 16 C 0.027 3.973 17 N -0.895 5.895 18 Si 0.931 3.069 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.269 1.269 22 C -0.092 4.092 23 C -0.112 4.112 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.103 4.103 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.413 0.587 38 H 0.395 0.605 39 H 0.273 0.727 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.055 0.945 49 H 0.070 0.930 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.398 10.143 -13.634 17.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.281 6.281 6 C 0.405 3.595 7 O -0.461 6.461 8 N -0.339 5.339 9 C 0.050 3.950 10 H 0.119 0.881 11 C 0.221 3.779 12 O -0.478 6.478 13 N -0.182 5.182 14 C -0.432 4.432 15 H 0.123 0.877 16 C -0.176 4.176 17 N -0.535 5.535 18 Si 0.757 3.243 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.193 1.193 22 C -0.112 4.112 23 C -0.150 4.150 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.157 4.157 27 C -0.140 4.140 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.250 0.750 38 H 0.229 0.771 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.089 0.911 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.202 10.277 -13.492 17.474 hybrid contribution 0.002 -0.504 0.759 0.911 sum 4.204 9.773 -12.733 16.593 Atomic orbital electron populations 1.22517 0.94140 1.05264 1.02137 1.21979 0.94293 0.91361 0.82361 1.21850 1.02146 0.92883 1.02890 1.22518 1.01382 1.03770 0.96304 1.86311 1.71711 1.23998 1.46121 1.17918 0.78956 0.80149 0.82467 1.90871 1.41630 1.70213 1.43418 1.44362 1.54728 1.11701 1.23152 1.20752 0.99785 0.79115 0.95397 0.88071 1.19608 0.85546 0.84145 0.88608 1.90525 1.54394 1.49280 1.53606 1.41776 1.58035 1.09390 1.08988 1.19714 1.43515 0.96750 0.83260 0.87736 1.25283 0.96690 0.95428 1.00187 1.69611 1.45024 1.04692 1.34150 0.85849 0.78835 0.77634 0.81942 1.20316 1.20846 1.19337 1.21586 0.95219 0.99424 0.95018 1.21531 0.93775 0.99554 1.00105 1.21506 0.99049 1.00090 0.94799 1.21524 0.96848 1.00887 0.96178 1.21567 0.95121 1.00217 0.98823 1.21619 0.99515 0.99198 0.93698 0.92277 0.91510 0.89107 0.91595 0.90412 0.91533 0.89022 0.91536 0.92381 0.75016 0.77142 0.91655 0.89638 0.92312 0.91093 0.91848 0.92428 0.92686 0.92558 0.92086 0.92634 0.91146 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 8.37 37.16 0.31 -1.82 16 2 C 0.14 1.61 1.13 -90.62 -0.10 1.51 16 3 C -0.14 -1.26 8.85 37.16 0.33 -0.93 16 4 C -0.18 -2.02 8.37 37.16 0.31 -1.71 16 5 O -0.37 -5.39 9.94 -40.31 -0.40 -5.79 16 6 C 0.65 10.56 6.41 54.05 0.35 10.91 16 7 O -0.57 -9.59 9.00 -19.28 -0.17 -9.77 16 8 N -0.68 -11.56 4.08 -59.87 -0.24 -11.81 16 9 C 0.16 2.85 2.42 -69.08 -0.17 2.69 16 10 H 0.10 1.87 7.58 -51.93 -0.39 1.48 16 11 C 0.44 9.80 5.91 -10.99 -0.06 9.73 16 12 O -0.59 -15.07 15.41 5.55 0.09 -14.99 16 13 N -0.55 -13.22 5.18 -10.96 -0.06 -13.27 16 14 C -0.30 -8.09 9.68 -14.93 -0.14 -8.24 16 15 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 16 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 17 N -0.89 -23.49 13.05 55.50 0.72 -22.76 16 18 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 C -0.09 -1.48 1.98 -90.62 -0.18 -1.66 16 23 C -0.11 -1.78 4.80 -26.73 -0.13 -1.91 16 24 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 25 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 26 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 27 C -0.10 -1.49 3.73 -26.73 -0.10 -1.59 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.27 5.88 -51.93 -0.31 0.97 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.22 5.88 -51.93 -0.31 0.91 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.41 7.17 7.90 -40.82 -0.32 6.85 16 38 H 0.39 9.24 7.32 -40.82 -0.30 8.94 16 39 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.09 1.43 7.56 -51.93 -0.39 1.03 16 41 H 0.06 0.92 7.60 -51.93 -0.39 0.52 16 42 H 0.07 1.32 7.22 -51.93 -0.37 0.94 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.07 1.08 7.53 -51.93 -0.39 0.69 16 50 H 0.06 0.91 5.77 -51.93 -0.30 0.61 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -28.49 383.99 -7.95 -36.44 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: -8.48 Total: 18.19 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -0.16 Total: 2.57 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.42 Total: -47.84 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.49 Total: -30.54 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.49 -7.95 -36.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073060580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.275 kcal (2) G-P(sol) polarization free energy of solvation -28.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds