Wall clock time and date at job start Tue Mar 31 2020 15:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47209 * 2 1 4 4 C 1.52999 * 109.47614 * 240.00080 * 2 1 3 5 5 O 1.45208 * 109.47274 * 119.99746 * 2 1 3 6 6 C 1.34635 * 116.99647 * 59.99985 * 5 2 1 7 7 O 1.21514 * 120.00063 * 0.02562 * 6 5 2 8 8 N 1.34773 * 119.99822 * 180.02562 * 6 5 2 9 9 C 1.46500 * 120.00050 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.47197 * 325.00357 * 9 8 6 11 11 C 1.50696 * 109.47324 * 205.00095 * 9 8 6 12 12 O 1.21292 * 119.99879 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00137 * 180.02562 * 11 9 8 14 14 C 1.37105 * 119.99968 * 180.02562 * 13 11 9 15 15 H 1.08004 * 119.99700 * 359.71718 * 14 13 11 16 16 C 1.38942 * 119.99884 * 179.97438 * 14 13 11 17 17 N 1.31411 * 120.00042 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00016 * 179.97438 * 16 14 13 19 19 H 1.48511 * 109.47043 * 90.00180 * 18 16 14 20 20 H 1.48494 * 109.47357 * 209.99845 * 18 16 14 21 21 H 1.48494 * 109.47227 * 330.00363 * 18 16 14 22 22 C 1.53002 * 109.47317 * 85.00003 * 9 8 6 23 23 C 1.52997 * 109.46978 * 59.99868 * 22 9 8 24 24 C 1.53006 * 109.47445 * 180.02562 * 23 22 9 25 25 C 1.52996 * 109.46840 * 60.00155 * 24 23 22 26 26 C 1.53008 * 109.47219 * 300.00340 * 25 24 23 27 27 C 1.52997 * 109.47280 * 60.00059 * 26 25 24 28 28 H 1.08999 * 109.47407 * 300.00274 * 1 2 3 29 29 H 1.09003 * 109.47065 * 60.00273 * 1 2 3 30 30 H 1.09006 * 109.46922 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47682 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46885 * 299.99837 * 3 2 1 33 33 H 1.08999 * 109.47160 * 59.99575 * 3 2 1 34 34 H 1.09006 * 109.46840 * 299.99883 * 4 2 1 35 35 H 1.08994 * 109.46994 * 59.99654 * 4 2 1 36 36 H 1.09000 * 109.47427 * 180.02562 * 4 2 1 37 37 H 0.97002 * 119.99920 * 0.02562 * 8 6 5 38 38 H 0.96999 * 120.00047 * 359.97438 * 13 11 9 39 39 H 0.97005 * 120.00019 * 180.02562 * 17 16 14 40 40 H 1.08992 * 109.47513 * 179.97438 * 22 9 8 41 41 H 1.09001 * 109.47375 * 300.00092 * 23 22 9 42 42 H 1.09002 * 109.47497 * 60.00450 * 23 22 9 43 43 H 1.09001 * 109.46726 * 300.00265 * 24 23 22 44 44 H 1.08996 * 109.47165 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.47368 * 180.02562 * 25 24 23 46 46 H 1.08992 * 109.47549 * 59.99942 * 25 24 23 47 47 H 1.09001 * 109.46630 * 300.00058 * 26 25 24 48 48 H 1.09002 * 109.47288 * 180.02562 * 26 25 24 49 49 H 1.08993 * 109.47194 * 180.02562 * 27 26 25 50 50 H 1.08998 * 109.47076 * 59.99674 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0672 -2.6653 2.4172 9 6 1.6740 -4.0668 2.5832 10 1 0.6653 -4.2095 2.1957 11 6 1.7060 -4.4276 4.0460 12 8 2.0253 -3.5958 4.8690 13 7 1.3798 -5.6746 4.4398 14 6 1.4084 -6.0028 5.7707 15 1 1.6967 -5.2632 6.5031 16 6 1.0716 -7.2882 6.1766 17 7 0.7251 -8.1892 5.2850 18 14 1.1112 -7.7355 7.9898 19 1 -0.2171 -7.4636 8.5959 20 1 1.4367 -9.1768 8.1372 21 1 2.1451 -6.9216 8.6780 22 6 2.6469 -4.9639 1.8153 23 6 4.0629 -4.7636 2.3591 24 6 5.0360 -5.6601 1.5908 25 6 5.0034 -5.2932 0.1058 26 6 3.5873 -5.4935 -0.4381 27 6 2.6143 -4.5969 0.3302 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6768 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1391 36 1 3.1301 -0.7216 -1.2489 37 1 2.6262 -2.2362 3.0838 38 1 1.1241 -6.3398 3.7816 39 1 0.4896 -9.0865 5.5685 40 1 2.3547 -6.0066 1.9391 41 1 4.3555 -3.7208 2.2356 42 1 4.0861 -5.0246 3.4172 43 1 4.7436 -6.7029 1.7139 44 1 6.0446 -5.5177 1.9786 45 1 5.6963 -5.9322 -0.4417 46 1 5.2957 -4.2504 -0.0173 47 1 3.2950 -6.5363 -0.3150 48 1 3.5642 -5.2325 -1.4961 49 1 1.6056 -4.7399 -0.0569 50 1 2.9067 -3.5541 0.2072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073060580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:51 Heat of formation + Delta-G solvation = -164.744487 kcal Electronic energy + Delta-G solvation = -30333.235115 eV Core-core repulsion = 26358.666618 eV Total energy + Delta-G solvation = -3974.568497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.12194 -40.78411 -39.10458 -38.00128 -36.21163 -35.56079 -34.85453 -33.42149 -31.92343 -31.61371 -28.46655 -28.28782 -28.23606 -26.41904 -23.73838 -23.49687 -22.69270 -21.06317 -20.94244 -20.42530 -19.99771 -19.29206 -17.63620 -17.53765 -17.23725 -16.82503 -16.47124 -16.20346 -15.75252 -15.44719 -15.29259 -15.20037 -15.03099 -14.83806 -14.66499 -14.39196 -14.02990 -13.54181 -13.29446 -13.24314 -13.07852 -13.06392 -12.93552 -12.82846 -12.80890 -12.74205 -12.45476 -12.38724 -12.23330 -12.12732 -12.04809 -11.96572 -11.55687 -11.41523 -11.31042 -11.21172 -11.07888 -10.92102 -10.46797 -10.07822 -10.00168 -8.49107 -5.98560 1.14148 1.36249 1.42965 1.55096 1.80442 1.94052 2.28362 3.00245 3.16734 3.21295 3.66314 3.79776 3.81733 3.86222 3.86703 4.01013 4.17302 4.19361 4.37962 4.40487 4.44968 4.59205 4.62155 4.64684 4.66990 4.68206 4.78627 4.81368 4.82108 4.90215 4.93603 4.99613 5.08342 5.17919 5.19711 5.26757 5.28318 5.29978 5.36000 5.39544 5.40875 5.44064 5.48859 5.56600 5.64114 5.93826 6.44032 6.51442 7.05986 7.36976 7.47320 7.97236 8.67596 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013993 B = 0.003819 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.554657 B = 7329.728906 C = 8555.205134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.123 3.877 3 C -0.136 4.136 4 C -0.177 4.177 5 O -0.372 6.372 6 C 0.655 3.345 7 O -0.577 6.577 8 N -0.684 5.684 9 C 0.171 3.829 10 H 0.098 0.902 11 C 0.440 3.560 12 O -0.623 6.623 13 N -0.554 5.554 14 C -0.334 4.334 15 H 0.083 0.917 16 C -0.007 4.007 17 N -0.914 5.914 18 Si 0.992 3.008 19 H -0.272 1.272 20 H -0.271 1.271 21 H -0.271 1.271 22 C -0.086 4.086 23 C -0.106 4.106 24 C -0.115 4.115 25 C -0.111 4.111 26 C -0.117 4.117 27 C -0.091 4.091 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.410 0.590 38 H 0.397 0.603 39 H 0.279 0.721 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.036 0.964 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.061 0.939 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.062 10.693 -15.270 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.087 3.913 3 C -0.193 4.193 4 C -0.234 4.234 5 O -0.287 6.287 6 C 0.408 3.592 7 O -0.467 6.467 8 N -0.343 5.343 9 C 0.063 3.937 10 H 0.116 0.884 11 C 0.227 3.773 12 O -0.511 6.511 13 N -0.189 5.189 14 C -0.464 4.464 15 H 0.101 0.899 16 C -0.208 4.208 17 N -0.554 5.554 18 Si 0.816 3.184 19 H -0.197 1.197 20 H -0.196 1.196 21 H -0.196 1.196 22 C -0.106 4.106 23 C -0.144 4.144 24 C -0.152 4.152 25 C -0.148 4.148 26 C -0.155 4.155 27 C -0.129 4.129 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.247 0.753 38 H 0.231 0.769 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.079 0.921 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.859 10.835 -15.164 19.261 hybrid contribution -0.237 -0.580 1.223 1.375 sum 4.622 10.255 -13.941 17.913 Atomic orbital electron populations 1.22481 0.94170 1.03776 1.03322 1.22451 0.94521 0.92712 0.81622 1.21886 1.02403 0.90779 1.04187 1.22461 1.01530 1.02509 0.96937 1.86330 1.71749 1.22905 1.47765 1.17877 0.78644 0.80691 0.81944 1.90878 1.41762 1.70606 1.43497 1.44297 1.55037 1.11306 1.23696 1.20527 1.00447 0.80476 0.92262 0.88372 1.20296 0.83564 0.83180 0.90282 1.90493 1.55305 1.50043 1.55233 1.41779 1.58652 1.10062 1.08402 1.19687 1.45466 0.97151 0.84059 0.89855 1.26034 0.95733 0.94827 1.04178 1.69673 1.44924 1.05030 1.35737 0.84938 0.78784 0.77688 0.77017 1.19745 1.19556 1.19572 1.21535 0.94676 0.98324 0.96040 1.21449 0.94368 1.00207 0.98379 1.21498 0.98749 0.99095 0.95865 1.21492 0.96948 1.01568 0.94832 1.21564 0.94744 0.99709 0.99442 1.21489 0.99744 0.99344 0.92303 0.92665 0.88773 0.91821 0.91237 0.87632 0.91705 0.91436 0.88991 0.92059 0.75318 0.76893 0.91119 0.90394 0.92146 0.94503 0.92369 0.91391 0.90529 0.92222 0.91949 0.90901 0.92055 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.96 8.37 71.98 0.60 -3.36 16 2 C 0.12 2.70 1.13 -10.79 -0.01 2.68 16 3 C -0.14 -2.08 8.85 71.98 0.64 -1.44 16 4 C -0.18 -3.57 8.37 71.98 0.60 -2.96 16 5 O -0.37 -10.77 9.94 -55.45 -0.55 -11.32 16 6 C 0.65 21.32 6.41 129.79 0.83 22.16 16 7 O -0.58 -19.46 9.00 19.80 0.18 -19.28 16 8 N -0.68 -23.84 4.08 -573.74 -2.34 -26.18 16 9 C 0.17 6.41 2.42 44.24 0.11 6.52 16 10 H 0.10 3.76 7.58 -2.39 -0.02 3.74 16 11 C 0.44 20.66 5.91 87.66 0.52 21.17 16 12 O -0.62 -33.11 15.41 -3.07 -0.05 -33.16 16 13 N -0.55 -27.86 5.18 -306.99 -1.59 -29.45 16 14 C -0.33 -18.47 9.68 84.04 0.81 -17.66 16 15 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 16 C -0.01 -0.36 5.50 84.92 0.47 0.11 16 17 N -0.91 -48.24 13.05 21.66 0.28 -47.95 16 18 Si 0.99 42.00 29.55 68.60 2.03 44.02 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 22 C -0.09 -2.80 1.98 -10.79 -0.02 -2.82 16 23 C -0.11 -3.43 4.80 30.60 0.15 -3.28 16 24 C -0.11 -3.02 5.92 30.59 0.18 -2.84 16 25 C -0.11 -2.45 5.92 30.60 0.18 -2.27 16 26 C -0.12 -2.74 5.92 30.60 0.18 -2.56 16 27 C -0.09 -2.59 3.73 30.60 0.11 -2.48 16 28 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.77 5.88 -2.38 -0.01 1.75 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.72 5.88 -2.38 -0.01 1.70 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.41 14.75 7.90 -92.71 -0.73 14.01 16 38 H 0.40 19.31 7.32 -92.71 -0.68 18.63 16 39 H 0.28 13.81 8.31 -92.70 -0.77 13.04 16 40 H 0.08 2.67 7.56 -2.39 -0.02 2.65 16 41 H 0.06 1.90 7.60 -2.39 -0.02 1.88 16 42 H 0.04 1.42 7.22 -2.39 -0.02 1.41 16 43 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.06 1.86 7.53 -2.39 -0.02 1.84 16 50 H 0.05 1.61 5.77 -2.39 -0.01 1.60 16 Total: -1.00 -62.53 383.99 2.85 -59.68 By element: Atomic # 1 Polarization: 53.13 SS G_CDS: -0.47 Total: 52.67 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 5.35 Total: 10.98 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -3.65 Total: -103.59 kcal Atomic # 8 Polarization: -63.34 SS G_CDS: -0.42 Total: -63.76 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -62.53 2.85 -59.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073060580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.065 kcal (2) G-P(sol) polarization free energy of solvation -62.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds