Wall clock time and date at job start Tue Mar 31 2020 15:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46984 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00054 * 2 1 3 5 5 O 1.45195 * 109.46942 * 120.00192 * 2 1 3 6 6 C 1.34631 * 117.00392 * 59.99701 * 5 2 1 7 7 O 1.21512 * 120.00090 * 0.02562 * 6 5 2 8 8 N 1.34781 * 120.00363 * 179.97438 * 6 5 2 9 9 C 1.46501 * 119.99999 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47028 * 35.00577 * 9 8 6 11 11 C 1.50707 * 109.46688 * 154.99874 * 9 8 6 12 12 O 1.21294 * 120.00021 * 0.02562 * 11 9 8 13 13 N 1.34774 * 119.99391 * 179.97438 * 11 9 8 14 14 C 1.37105 * 119.99366 * 180.02562 * 13 11 9 15 15 H 1.07999 * 120.00065 * 359.97438 * 14 13 11 16 16 C 1.38957 * 119.99556 * 180.02562 * 14 13 11 17 17 N 1.31410 * 120.00114 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99791 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47008 * 89.99625 * 18 16 14 20 20 H 1.48492 * 109.47119 * 209.99980 * 18 16 14 21 21 H 1.48502 * 109.46857 * 330.00128 * 18 16 14 22 22 C 1.52997 * 109.47384 * 275.00079 * 9 8 6 23 23 C 1.52996 * 109.46975 * 64.99993 * 22 9 8 24 24 C 1.53000 * 109.47328 * 180.02562 * 23 22 9 25 25 C 1.52997 * 109.47060 * 60.00126 * 24 23 22 26 26 C 1.53006 * 109.47127 * 300.00449 * 25 24 23 27 27 C 1.52997 * 109.47164 * 59.99836 * 26 25 24 28 28 H 1.09001 * 109.47110 * 300.00383 * 1 2 3 29 29 H 1.09003 * 109.47011 * 60.00037 * 1 2 3 30 30 H 1.08997 * 109.47510 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46832 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47216 * 299.99837 * 3 2 1 33 33 H 1.08991 * 109.47633 * 59.99927 * 3 2 1 34 34 H 1.08999 * 109.47142 * 299.99798 * 4 2 1 35 35 H 1.08994 * 109.47534 * 60.00328 * 4 2 1 36 36 H 1.09003 * 109.46651 * 180.02562 * 4 2 1 37 37 H 0.96994 * 119.99617 * 0.02562 * 8 6 5 38 38 H 0.97001 * 120.00649 * 0.02562 * 13 11 9 39 39 H 0.96998 * 120.00058 * 180.02562 * 17 16 14 40 40 H 1.08992 * 109.47280 * 185.00528 * 22 9 8 41 41 H 1.09004 * 109.47368 * 60.00217 * 23 22 9 42 42 H 1.09001 * 109.47372 * 300.00372 * 23 22 9 43 43 H 1.09002 * 109.47398 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.47194 * 300.00476 * 24 23 22 45 45 H 1.08998 * 109.47533 * 59.99948 * 25 24 23 46 46 H 1.08996 * 109.47853 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47002 * 299.99574 * 26 25 24 48 48 H 1.09000 * 109.47050 * 179.97438 * 26 25 24 49 49 H 1.09002 * 109.47045 * 180.02562 * 27 26 25 50 50 H 1.09001 * 109.47375 * 59.99966 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5036 8 7 2.0680 -2.6657 2.4167 9 6 1.6747 -4.0672 2.5826 10 1 1.6282 -4.5495 1.6063 11 6 2.6885 -4.7746 3.4446 12 8 3.6451 -4.1677 3.8780 13 7 2.5316 -6.0814 3.7346 14 6 3.4536 -6.7249 4.5192 15 1 4.3058 -6.1847 4.9044 16 6 3.2922 -8.0723 4.8178 17 7 2.2555 -8.7297 4.3486 18 14 4.5487 -8.9493 5.8862 19 1 4.1482 -8.8404 7.3121 20 1 4.6149 -10.3811 5.4985 21 1 5.8820 -8.3231 5.6974 22 6 0.3003 -4.1355 3.2513 23 6 -0.7506 -3.5278 2.3201 24 6 -2.1250 -3.5955 2.9889 25 6 -2.0924 -2.8109 4.3020 26 6 -1.0413 -3.4186 5.2333 27 6 0.3330 -3.3509 4.5643 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 2.6275 -2.2369 3.0828 38 1 1.7664 -6.5667 3.3883 39 1 2.1426 -9.6702 4.5574 40 1 0.0469 -5.1757 3.4554 41 1 -0.7736 -4.0865 1.3844 42 1 -0.4971 -2.4875 2.1159 43 1 -2.8738 -3.1630 2.3254 44 1 -2.3787 -4.6357 3.1935 45 1 -1.8386 -1.7708 4.0977 46 1 -3.0713 -2.8595 4.7789 47 1 -1.2950 -4.4588 5.4378 48 1 -1.0178 -2.8594 6.1686 49 1 1.0816 -3.7842 5.2276 50 1 0.5867 -2.3107 4.3598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073060582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:56 Heat of formation + Delta-G solvation = -147.750128 kcal Electronic energy + Delta-G solvation = -30322.805034 eV Core-core repulsion = 26348.973468 eV Total energy + Delta-G solvation = -3973.831566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.81997 -39.33176 -37.55923 -36.83334 -34.55053 -34.01669 -33.68173 -31.55061 -30.55592 -30.43691 -27.46984 -27.40282 -26.89351 -24.58830 -22.54743 -22.29536 -21.35592 -19.87845 -19.46292 -19.02729 -18.18573 -17.87853 -16.44988 -16.16713 -15.61065 -15.46404 -15.00177 -14.65581 -14.41441 -14.19872 -13.99304 -13.85879 -13.73914 -13.65709 -13.23505 -13.15335 -12.59138 -12.49813 -12.28712 -11.95873 -11.91662 -11.81851 -11.79306 -11.64006 -11.55864 -11.31592 -11.25442 -11.09744 -10.91119 -10.80832 -10.45164 -10.34242 -10.29204 -10.23202 -9.97717 -9.86424 -9.70904 -9.60953 -8.86284 -8.39653 -8.07820 -6.50131 -3.91653 2.37428 3.09995 3.13474 3.22980 3.28465 3.74659 4.09412 4.39431 4.68621 4.72147 4.73718 4.86940 4.92173 4.99739 5.07935 5.19987 5.38149 5.41625 5.46985 5.53520 5.56688 5.61328 5.62600 5.69956 5.74784 5.76875 5.81263 5.82737 5.89610 5.91671 6.01030 6.08791 6.18045 6.27134 6.27544 6.29332 6.35628 6.40504 6.46847 6.52771 6.63019 6.71352 6.74056 6.86657 7.47477 7.80757 7.93976 8.46923 8.68508 9.06600 9.41003 9.89279 10.66682 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.003818 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.666783 B = 7332.311561 C = 8551.131745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.366 6.366 6 C 0.652 3.348 7 O -0.571 6.571 8 N -0.680 5.680 9 C 0.158 3.842 10 H 0.102 0.898 11 C 0.435 3.565 12 O -0.592 6.592 13 N -0.547 5.547 14 C -0.303 4.303 15 H 0.105 0.895 16 C 0.027 3.973 17 N -0.894 5.894 18 Si 0.931 3.069 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.269 1.269 22 C -0.093 4.093 23 C -0.104 4.104 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.111 4.111 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.413 0.587 38 H 0.395 0.605 39 H 0.274 0.726 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.069 0.931 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.835 14.481 -6.236 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.405 3.595 7 O -0.461 6.461 8 N -0.339 5.339 9 C 0.050 3.950 10 H 0.119 0.881 11 C 0.220 3.780 12 O -0.478 6.478 13 N -0.182 5.182 14 C -0.433 4.433 15 H 0.123 0.877 16 C -0.176 4.176 17 N -0.535 5.535 18 Si 0.757 3.243 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.193 1.193 22 C -0.113 4.113 23 C -0.141 4.141 24 C -0.157 4.157 25 C -0.154 4.154 26 C -0.155 4.155 27 C -0.149 4.149 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.250 0.750 38 H 0.229 0.771 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.088 0.912 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.584 14.456 -6.375 17.525 hybrid contribution 0.370 -0.643 0.537 0.915 sum -7.215 13.813 -5.838 16.641 Atomic orbital electron populations 1.22519 0.94151 1.05244 1.02060 1.21977 0.94232 0.91364 0.82421 1.21850 1.02259 0.92841 1.02817 1.22516 1.01558 1.03708 0.96278 1.86306 1.71703 1.24037 1.46083 1.17932 0.78975 0.80352 0.82282 1.90873 1.41417 1.70201 1.43578 1.44367 1.54467 1.11665 1.23421 1.20752 0.93543 0.80142 1.00593 0.88054 1.19621 0.88135 0.83652 0.86558 1.90525 1.33447 1.66098 1.57735 1.41777 1.24449 1.07483 1.44476 1.19719 1.04993 0.92604 1.25943 0.87729 1.25288 0.97614 0.96601 0.98084 1.69608 1.28419 1.10721 1.44726 0.85848 0.80529 0.78247 0.79633 1.20300 1.20840 1.19341 1.21597 0.93195 1.01019 0.95492 1.21628 0.93159 1.01687 0.97664 1.21566 0.97531 1.00321 0.96329 1.21520 0.98458 0.99366 0.96070 1.21511 0.95010 1.01124 0.97824 1.21513 0.97076 1.00204 0.96086 0.92376 0.91537 0.89033 0.91529 0.90417 0.91592 0.89108 0.91511 0.92274 0.75002 0.77133 0.91648 0.89618 0.91428 0.91825 0.92615 0.92091 0.92564 0.92681 0.91840 0.92440 0.91244 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 8.37 37.16 0.31 -1.70 16 2 C 0.14 1.61 1.13 -90.62 -0.10 1.51 16 3 C -0.14 -1.25 8.85 37.16 0.33 -0.93 16 4 C -0.18 -2.13 8.37 37.16 0.31 -1.82 16 5 O -0.37 -5.37 9.94 -40.30 -0.40 -5.78 16 6 C 0.65 10.54 6.62 54.06 0.36 10.90 16 7 O -0.57 -9.57 9.02 -19.28 -0.17 -9.75 16 8 N -0.68 -11.55 3.93 -59.87 -0.24 -11.78 16 9 C 0.16 2.86 2.36 -69.08 -0.16 2.69 16 10 H 0.10 1.88 7.58 -51.93 -0.39 1.48 16 11 C 0.44 9.80 6.15 -10.98 -0.07 9.73 16 12 O -0.59 -15.09 15.41 5.55 0.09 -15.01 16 13 N -0.55 -13.24 5.15 -10.96 -0.06 -13.30 16 14 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 15 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 16 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 17 N -0.89 -23.50 13.05 55.50 0.72 -22.78 16 18 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 C -0.09 -1.49 1.97 -90.62 -0.18 -1.67 16 23 C -0.10 -1.51 3.80 -26.73 -0.10 -1.61 16 24 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 25 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 26 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 27 C -0.11 -1.74 4.80 -26.73 -0.13 -1.87 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.21 5.88 -51.93 -0.31 0.91 16 31 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.27 5.88 -51.93 -0.31 0.97 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.41 7.16 7.90 -40.82 -0.32 6.84 16 38 H 0.39 9.25 7.26 -40.82 -0.30 8.96 16 39 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.09 1.44 7.43 -51.93 -0.39 1.06 16 41 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 42 H 0.06 0.98 5.64 -51.93 -0.29 0.68 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.07 1.27 7.38 -51.93 -0.38 0.88 16 50 H 0.06 0.91 7.47 -51.93 -0.39 0.52 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -28.53 384.33 -7.92 -36.45 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: -8.49 Total: 18.17 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -0.15 Total: 2.57 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.43 Total: -47.86 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.49 Total: -30.53 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.53 -7.92 -36.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073060582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.301 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds