Wall clock time and date at job start Tue Mar 31 2020 15:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46984 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00054 * 2 1 3 5 5 O 1.45195 * 109.46942 * 120.00192 * 2 1 3 6 6 C 1.34631 * 117.00392 * 59.99701 * 5 2 1 7 7 O 1.21512 * 120.00090 * 0.02562 * 6 5 2 8 8 N 1.34781 * 120.00363 * 179.97438 * 6 5 2 9 9 C 1.46501 * 119.99999 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47028 * 35.00577 * 9 8 6 11 11 C 1.50707 * 109.46688 * 154.99874 * 9 8 6 12 12 O 1.21294 * 120.00021 * 0.02562 * 11 9 8 13 13 N 1.34774 * 119.99391 * 179.97438 * 11 9 8 14 14 C 1.37105 * 119.99366 * 180.02562 * 13 11 9 15 15 H 1.07999 * 120.00065 * 359.97438 * 14 13 11 16 16 C 1.38957 * 119.99556 * 180.02562 * 14 13 11 17 17 N 1.31410 * 120.00114 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99791 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47008 * 89.99625 * 18 16 14 20 20 H 1.48492 * 109.47119 * 209.99980 * 18 16 14 21 21 H 1.48502 * 109.46857 * 330.00128 * 18 16 14 22 22 C 1.52997 * 109.47384 * 275.00079 * 9 8 6 23 23 C 1.52996 * 109.46975 * 64.99993 * 22 9 8 24 24 C 1.53000 * 109.47328 * 180.02562 * 23 22 9 25 25 C 1.52997 * 109.47060 * 60.00126 * 24 23 22 26 26 C 1.53006 * 109.47127 * 300.00449 * 25 24 23 27 27 C 1.52997 * 109.47164 * 59.99836 * 26 25 24 28 28 H 1.09001 * 109.47110 * 300.00383 * 1 2 3 29 29 H 1.09003 * 109.47011 * 60.00037 * 1 2 3 30 30 H 1.08997 * 109.47510 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46832 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47216 * 299.99837 * 3 2 1 33 33 H 1.08991 * 109.47633 * 59.99927 * 3 2 1 34 34 H 1.08999 * 109.47142 * 299.99798 * 4 2 1 35 35 H 1.08994 * 109.47534 * 60.00328 * 4 2 1 36 36 H 1.09003 * 109.46651 * 180.02562 * 4 2 1 37 37 H 0.96994 * 119.99617 * 0.02562 * 8 6 5 38 38 H 0.97001 * 120.00649 * 0.02562 * 13 11 9 39 39 H 0.96998 * 120.00058 * 180.02562 * 17 16 14 40 40 H 1.08992 * 109.47280 * 185.00528 * 22 9 8 41 41 H 1.09004 * 109.47368 * 60.00217 * 23 22 9 42 42 H 1.09001 * 109.47372 * 300.00372 * 23 22 9 43 43 H 1.09002 * 109.47398 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.47194 * 300.00476 * 24 23 22 45 45 H 1.08998 * 109.47533 * 59.99948 * 25 24 23 46 46 H 1.08996 * 109.47853 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47002 * 299.99574 * 26 25 24 48 48 H 1.09000 * 109.47050 * 179.97438 * 26 25 24 49 49 H 1.09002 * 109.47045 * 180.02562 * 27 26 25 50 50 H 1.09001 * 109.47375 * 59.99966 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5036 8 7 2.0680 -2.6657 2.4167 9 6 1.6747 -4.0672 2.5826 10 1 1.6282 -4.5495 1.6063 11 6 2.6885 -4.7746 3.4446 12 8 3.6451 -4.1677 3.8780 13 7 2.5316 -6.0814 3.7346 14 6 3.4536 -6.7249 4.5192 15 1 4.3058 -6.1847 4.9044 16 6 3.2922 -8.0723 4.8178 17 7 2.2555 -8.7297 4.3486 18 14 4.5487 -8.9493 5.8862 19 1 4.1482 -8.8404 7.3121 20 1 4.6149 -10.3811 5.4985 21 1 5.8820 -8.3231 5.6974 22 6 0.3003 -4.1355 3.2513 23 6 -0.7506 -3.5278 2.3201 24 6 -2.1250 -3.5955 2.9889 25 6 -2.0924 -2.8109 4.3020 26 6 -1.0413 -3.4186 5.2333 27 6 0.3330 -3.3509 4.5643 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 2.6275 -2.2369 3.0828 38 1 1.7664 -6.5667 3.3883 39 1 2.1426 -9.6702 4.5574 40 1 0.0469 -5.1757 3.4554 41 1 -0.7736 -4.0865 1.3844 42 1 -0.4971 -2.4875 2.1159 43 1 -2.8738 -3.1630 2.3254 44 1 -2.3787 -4.6357 3.1935 45 1 -1.8386 -1.7708 4.0977 46 1 -3.0713 -2.8595 4.7789 47 1 -1.2950 -4.4588 5.4378 48 1 -1.0178 -2.8594 6.1686 49 1 1.0816 -3.7842 5.2276 50 1 0.5867 -2.3107 4.3598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073060582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:55 Heat of formation + Delta-G solvation = -164.681814 kcal Electronic energy + Delta-G solvation = -30323.539247 eV Core-core repulsion = 26348.973468 eV Total energy + Delta-G solvation = -3974.565779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.11323 -40.77824 -39.11489 -37.99829 -36.21603 -35.56549 -34.85483 -33.42380 -31.92536 -31.61228 -28.47065 -28.28872 -28.23657 -26.41438 -23.74813 -23.47906 -22.70370 -21.05735 -20.93178 -20.44278 -19.99599 -19.28931 -17.63612 -17.53861 -17.23436 -16.82959 -16.47488 -16.19679 -15.74646 -15.46420 -15.29552 -15.20408 -15.03598 -14.83006 -14.65458 -14.38721 -14.04384 -13.54381 -13.29221 -13.24915 -13.07581 -13.06356 -12.93394 -12.82665 -12.81275 -12.73985 -12.46090 -12.39039 -12.23763 -12.13126 -12.05345 -11.97546 -11.55743 -11.41766 -11.31473 -11.19066 -11.05212 -10.92590 -10.47674 -10.08079 -9.99964 -8.49378 -5.98889 1.14069 1.36184 1.42876 1.55040 1.80384 1.93656 2.28272 2.99858 3.16448 3.21213 3.66936 3.79715 3.81641 3.86329 3.86641 4.01008 4.16964 4.20076 4.37951 4.40434 4.45215 4.59402 4.62026 4.65137 4.67115 4.68169 4.78917 4.81087 4.82141 4.90311 4.93658 4.99781 5.08306 5.17678 5.19735 5.27090 5.28965 5.30152 5.36006 5.39371 5.40800 5.43721 5.48534 5.56531 5.64817 5.93560 6.43930 6.51155 7.05672 7.36837 7.47005 7.96866 8.67338 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.003818 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.666783 B = 7332.311561 C = 8551.131745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.123 3.877 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.372 6.372 6 C 0.654 3.346 7 O -0.576 6.576 8 N -0.684 5.684 9 C 0.172 3.828 10 H 0.098 0.902 11 C 0.439 3.561 12 O -0.623 6.623 13 N -0.554 5.554 14 C -0.335 4.335 15 H 0.084 0.916 16 C -0.007 4.007 17 N -0.914 5.914 18 Si 0.992 3.008 19 H -0.270 1.270 20 H -0.272 1.272 21 H -0.272 1.272 22 C -0.086 4.086 23 C -0.093 4.093 24 C -0.117 4.117 25 C -0.111 4.111 26 C -0.115 4.115 27 C -0.106 4.106 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.410 0.590 38 H 0.397 0.603 39 H 0.279 0.721 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.068 0.932 49 H 0.036 0.964 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.132 15.726 -6.651 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.087 3.913 3 C -0.193 4.193 4 C -0.238 4.238 5 O -0.287 6.287 6 C 0.408 3.592 7 O -0.467 6.467 8 N -0.343 5.343 9 C 0.063 3.937 10 H 0.116 0.884 11 C 0.226 3.774 12 O -0.511 6.511 13 N -0.189 5.189 14 C -0.464 4.464 15 H 0.102 0.898 16 C -0.208 4.208 17 N -0.554 5.554 18 Si 0.816 3.184 19 H -0.195 1.195 20 H -0.196 1.196 21 H -0.197 1.197 22 C -0.106 4.106 23 C -0.131 4.131 24 C -0.155 4.155 25 C -0.148 4.148 26 C -0.152 4.152 27 C -0.143 4.143 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.247 0.753 38 H 0.231 0.769 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.076 0.924 48 H 0.087 0.913 49 H 0.055 0.945 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.905 15.715 -6.814 19.306 hybrid contribution 0.791 -0.954 0.590 1.372 sum -8.114 14.762 -6.224 17.958 Atomic orbital electron populations 1.22462 0.93444 1.04045 1.03491 1.22448 0.95015 0.92539 0.81299 1.21885 1.02197 0.90800 1.04371 1.22481 1.01281 1.02449 0.97540 1.86325 1.71770 1.22964 1.47665 1.17892 0.78716 0.80916 0.81692 1.90879 1.41608 1.70597 1.43590 1.44300 1.54895 1.11146 1.23963 1.20523 0.93250 0.80499 0.99388 0.88373 1.20319 0.88189 0.83124 0.85795 1.90493 1.34994 1.66673 1.58901 1.41784 1.24322 1.08075 1.44726 1.19695 1.05480 0.93485 1.27765 0.89840 1.26042 0.99285 0.96649 0.98793 1.69671 1.29359 1.11177 1.45150 0.84935 0.77949 0.77347 0.78179 1.19507 1.19637 1.19689 1.21543 0.92291 1.00781 0.96019 1.21504 0.93822 1.00803 0.96929 1.21562 0.96359 1.00742 0.96827 1.21490 0.98856 0.99149 0.95335 1.21505 0.93930 1.01226 0.98582 1.21437 0.97813 0.99802 0.95274 0.92043 0.88998 0.91448 0.91701 0.87642 0.91226 0.91821 0.88780 0.92665 0.75294 0.76880 0.91106 0.90564 0.92299 0.92368 0.90904 0.92043 0.92192 0.90547 0.92436 0.91282 0.94471 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.56 8.37 71.98 0.60 -2.96 16 2 C 0.12 2.69 1.13 -10.79 -0.01 2.68 16 3 C -0.14 -2.07 8.85 71.98 0.64 -1.43 16 4 C -0.18 -3.96 8.37 71.98 0.60 -3.35 16 5 O -0.37 -10.74 9.94 -55.41 -0.55 -11.29 16 6 C 0.65 21.28 6.62 129.79 0.86 22.14 16 7 O -0.58 -19.42 9.02 19.80 0.18 -19.24 16 8 N -0.68 -23.81 3.93 -573.72 -2.25 -26.06 16 9 C 0.17 6.43 2.36 44.25 0.10 6.54 16 10 H 0.10 3.76 7.58 -2.39 -0.02 3.74 16 11 C 0.44 20.64 6.15 87.66 0.54 21.18 16 12 O -0.62 -33.13 15.41 -3.07 -0.05 -33.18 16 13 N -0.55 -27.92 5.15 -306.97 -1.58 -29.50 16 14 C -0.33 -18.53 9.68 84.04 0.81 -17.71 16 15 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 16 C -0.01 -0.35 5.50 84.93 0.47 0.11 16 17 N -0.91 -48.26 13.05 21.67 0.28 -47.98 16 18 Si 0.99 42.00 29.55 68.60 2.03 44.03 16 19 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 C -0.09 -2.82 1.97 -10.80 -0.02 -2.84 16 23 C -0.09 -2.66 3.80 30.59 0.12 -2.54 16 24 C -0.12 -2.76 5.92 30.59 0.18 -2.58 16 25 C -0.11 -2.44 5.92 30.60 0.18 -2.26 16 26 C -0.11 -3.00 5.92 30.60 0.18 -2.82 16 27 C -0.11 -3.36 4.80 30.59 0.15 -3.21 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.71 5.88 -2.39 -0.01 1.70 16 31 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.76 5.88 -2.39 -0.01 1.75 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.41 14.73 7.90 -92.71 -0.73 14.00 16 38 H 0.40 19.35 7.26 -92.71 -0.67 18.67 16 39 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 40 H 0.08 2.64 7.43 -2.39 -0.02 2.63 16 41 H 0.06 1.78 7.85 -2.39 -0.02 1.77 16 42 H 0.06 1.74 5.64 -2.39 -0.01 1.73 16 43 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.04 1.41 7.38 -2.39 -0.02 1.39 16 50 H 0.06 1.92 7.47 -2.39 -0.02 1.90 16 Total: -1.00 -62.56 384.33 3.00 -59.56 By element: Atomic # 1 Polarization: 53.18 SS G_CDS: -0.46 Total: 52.72 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 5.40 Total: 10.94 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -3.55 Total: -103.54 kcal Atomic # 8 Polarization: -63.29 SS G_CDS: -0.42 Total: -63.71 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -62.56 3.00 -59.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073060582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.117 kcal (2) G-P(sol) polarization free energy of solvation -62.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds