Wall clock time and date at job start Tue Mar 31 2020 16:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47166 * 2 1 4 4 N 1.46499 * 109.47122 * 176.04081 * 3 2 1 5 5 C 1.37095 * 120.00238 * 264.21825 * 4 3 2 6 6 H 1.08003 * 119.99975 * 187.12857 * 5 4 3 7 7 C 1.38949 * 119.99626 * 7.12879 * 5 4 3 8 8 N 1.31410 * 120.00127 * 23.97713 * 7 5 4 9 9 Si 1.86804 * 119.99713 * 203.96919 * 7 5 4 10 10 H 1.48496 * 109.47351 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46747 * 120.00688 * 9 7 5 12 12 H 1.48504 * 109.47173 * 240.00042 * 9 7 5 13 13 C 1.34782 * 119.99882 * 84.22309 * 4 3 2 14 14 O 1.21287 * 120.00331 * 4.95852 * 13 4 3 15 15 C 1.50701 * 120.00070 * 184.96558 * 13 4 3 16 16 H 1.08998 * 110.78029 * 34.10600 * 15 13 4 17 17 C 1.55396 * 110.85467 * 157.41000 * 15 13 4 18 18 C 1.54914 * 101.66625 * 153.70149 * 17 15 13 19 19 N 1.47424 * 104.82877 * 323.07370 * 18 17 15 20 20 C 1.34780 * 125.64632 * 204.09575 * 19 18 17 21 21 O 1.21512 * 119.99774 * 180.02562 * 20 19 18 22 22 O 1.34639 * 120.00032 * 0.03954 * 20 19 18 23 23 C 1.45195 * 117.00001 * 180.02562 * 22 20 19 24 24 C 1.52999 * 109.47303 * 60.00013 * 23 22 20 25 25 C 1.53001 * 109.47173 * 180.02562 * 23 22 20 26 26 C 1.53003 * 109.46925 * 299.99914 * 23 22 20 27 27 C 1.47018 * 108.70645 * 24.13081 * 19 18 17 28 28 H 1.08993 * 109.47191 * 60.00171 * 1 2 3 29 29 H 1.08996 * 109.46846 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46900 * 300.00059 * 1 2 3 31 31 H 1.09004 * 109.46900 * 239.99941 * 2 1 3 32 32 H 1.09006 * 109.46904 * 119.99894 * 2 1 3 33 33 H 1.08996 * 109.47596 * 56.03729 * 3 2 1 34 34 H 1.09007 * 109.47127 * 296.03989 * 3 2 1 35 35 H 0.97000 * 120.00001 * 180.02562 * 8 7 5 36 36 H 1.08996 * 110.89268 * 35.62560 * 17 15 13 37 37 H 1.09005 * 111.03707 * 271.83156 * 17 15 13 38 38 H 1.09001 * 110.36361 * 204.23552 * 18 17 15 39 39 H 1.09004 * 110.36936 * 81.91204 * 18 17 15 40 40 H 1.08995 * 109.46969 * 59.99936 * 24 23 22 41 41 H 1.08997 * 109.47015 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.46890 * 300.00024 * 24 23 22 43 43 H 1.08997 * 109.47252 * 59.99894 * 25 23 22 44 44 H 1.08998 * 109.46977 * 180.02562 * 25 23 22 45 45 H 1.09001 * 109.46642 * 299.99587 * 25 23 22 46 46 H 1.09002 * 109.47164 * 60.00780 * 26 23 22 47 47 H 1.09008 * 109.46986 * 179.97438 * 26 23 22 48 48 H 1.08997 * 109.47374 * 300.00028 * 26 23 22 49 49 H 1.08992 * 109.88773 * 118.35762 * 27 19 18 50 50 H 1.08999 * 109.88405 * 239.37310 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5019 1.4435 0.0954 5 6 4.1092 1.5908 1.3156 6 1 5.1813 1.7072 1.3747 7 6 3.3453 1.5903 2.4763 8 7 2.1703 1.0019 2.4893 9 14 3.9887 2.4257 4.0182 10 1 5.3261 3.0098 3.7435 11 1 3.0520 3.5041 4.4244 12 1 4.0991 1.4279 5.1125 13 6 4.2499 1.2998 -1.0166 14 8 3.7166 1.2600 -2.1053 15 6 5.7488 1.1886 -0.9073 16 1 6.0320 0.6599 0.0028 17 6 6.3440 0.4853 -2.1587 18 6 7.7796 1.0667 -2.1916 19 7 7.6290 2.4683 -1.7601 20 6 8.4741 3.4760 -2.0549 21 8 8.2498 4.5970 -1.6432 22 8 9.5667 3.2405 -2.8056 23 6 10.4324 4.3726 -3.0829 24 6 10.9553 4.9496 -1.7658 25 6 11.6117 3.9142 -3.9432 26 6 9.6423 5.4473 -3.8325 27 6 6.4048 2.5847 -0.9543 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.6199 1.9764 0.8523 34 1 1.7358 1.9354 -0.9234 35 1 1.6369 1.0019 3.2995 36 1 5.7913 0.7582 -3.0577 37 1 6.3636 -0.5966 -2.0273 38 1 8.1836 1.0224 -3.2030 39 1 8.4245 0.5241 -1.5004 40 1 11.5181 4.1840 -1.2319 41 1 11.6048 5.7997 -1.9740 42 1 10.1149 5.2763 -1.1533 43 1 11.2389 3.5035 -4.8815 44 1 12.2618 4.7640 -4.1510 45 1 12.1747 3.1485 -3.4095 46 1 8.8020 5.7741 -3.2199 47 1 10.2922 6.2974 -4.0403 48 1 9.2699 5.0363 -4.7708 49 1 6.6550 2.9108 0.0551 50 1 5.7234 3.2990 -1.4163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077738519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:16 Heat of formation + Delta-G solvation = -123.391650 kcal Electronic energy + Delta-G solvation = -29502.558759 eV Core-core repulsion = 25529.783456 eV Total energy + Delta-G solvation = -3972.775303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.93912 -40.88649 -39.15052 -37.58813 -36.94505 -35.08549 -34.15878 -33.39698 -32.44506 -30.26824 -28.35721 -28.26845 -27.65937 -26.62862 -25.30083 -23.11677 -22.56976 -21.87411 -20.81541 -20.43516 -19.20871 -18.60503 -18.08733 -17.62193 -17.39706 -16.49382 -16.26536 -16.07371 -15.86455 -15.51694 -15.35631 -15.19617 -14.75286 -14.47341 -14.41020 -14.11827 -13.81544 -13.54164 -13.49704 -13.32258 -13.13400 -13.04883 -12.90911 -12.85114 -12.78646 -12.64402 -12.45978 -12.41838 -12.33374 -12.24595 -12.13280 -12.06458 -12.03547 -11.66267 -11.39032 -11.36232 -11.13050 -10.75020 -10.32669 -9.82920 -9.71678 -8.27799 -5.79138 0.98116 1.39869 1.51702 1.61226 1.70260 1.97489 2.30009 2.82551 3.01051 3.10219 3.56105 3.70173 3.77611 3.81193 3.96278 4.04359 4.20855 4.33302 4.35088 4.47227 4.50995 4.54707 4.61432 4.62399 4.71743 4.72180 4.74557 4.77501 4.82686 4.84720 4.89823 4.94321 5.00905 5.07737 5.10961 5.17622 5.24991 5.29613 5.30073 5.32477 5.36133 5.44895 5.46190 5.60303 5.80078 5.88421 6.39263 6.50831 7.15131 7.21424 7.62077 8.02926 8.70679 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.016336 B = 0.003277 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.626713 B = 8541.440863 C = 9619.431977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.136 3.864 4 N -0.444 5.444 5 C -0.359 4.359 6 H 0.110 0.890 7 C 0.006 3.994 8 N -0.864 5.864 9 Si 0.974 3.026 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.278 1.278 13 C 0.446 3.554 14 O -0.638 6.638 15 C -0.096 4.096 16 H 0.112 0.888 17 C -0.108 4.108 18 C 0.111 3.889 19 N -0.605 5.605 20 C 0.663 3.337 21 O -0.596 6.596 22 O -0.360 6.360 23 C 0.121 3.879 24 C -0.179 4.179 25 C -0.132 4.132 26 C -0.181 4.181 27 C 0.156 3.844 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.018 0.982 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.023 0.977 35 H 0.272 0.728 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.104 0.896 45 H 0.072 0.928 46 H 0.054 0.946 47 H 0.095 0.905 48 H 0.060 0.940 49 H 0.073 0.927 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.080 1.197 -6.616 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.140 4.140 3 C 0.013 3.987 4 N -0.159 5.159 5 C -0.486 4.486 6 H 0.127 0.873 7 C -0.198 4.198 8 N -0.501 5.501 9 Si 0.799 3.201 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.204 1.204 13 C 0.236 3.764 14 O -0.528 6.528 15 C -0.118 4.118 16 H 0.130 0.870 17 C -0.147 4.147 18 C -0.010 4.010 19 N -0.346 5.346 20 C 0.419 3.581 21 O -0.487 6.487 22 O -0.274 6.274 23 C 0.085 3.915 24 C -0.237 4.237 25 C -0.189 4.189 26 C -0.238 4.238 27 C 0.034 3.966 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.112 0.888 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.123 0.877 45 H 0.091 0.909 46 H 0.073 0.927 47 H 0.113 0.887 48 H 0.079 0.921 49 H 0.092 0.908 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.697 1.586 -6.897 16.312 hybrid contribution -0.422 0.568 1.013 1.235 sum 14.275 2.154 -5.884 15.590 Atomic orbital electron populations 1.21493 0.94693 1.01334 1.00908 1.21505 0.96353 0.96627 0.99540 1.21335 0.80585 0.97890 0.98888 1.44081 1.05752 1.59723 1.06385 1.19997 0.94615 1.51329 0.82624 0.87250 1.25859 0.96387 0.96177 1.01357 1.70236 1.13248 1.37105 1.29547 0.85163 0.78672 0.78193 0.78063 1.18974 1.20850 1.20400 1.20202 0.89560 0.82969 0.83703 1.90489 1.74750 1.59265 1.28279 1.22092 0.91612 0.96124 1.01929 0.86971 1.22749 0.93999 1.01258 0.96662 1.22539 0.97273 0.79152 1.02057 1.47265 1.23813 1.09320 1.54187 1.17588 0.79791 0.82787 0.77954 1.90887 1.76848 1.22324 1.58674 1.86310 1.33459 1.42207 1.65473 1.22502 0.88976 0.83611 0.96411 1.22469 1.02135 1.02369 0.96683 1.21866 0.94476 1.03596 0.98932 1.22488 1.01737 0.99363 1.00245 1.21472 0.83621 0.96776 0.94775 0.93545 0.92181 0.92836 0.96335 0.91111 0.89223 0.95896 0.91824 0.91245 0.87449 0.88529 0.88638 0.91705 0.88753 0.92579 0.91179 0.87713 0.90922 0.92694 0.88658 0.92070 0.90823 0.93927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 9.91 71.98 0.71 -3.94 16 2 C -0.10 -4.58 5.65 30.59 0.17 -4.40 16 3 C 0.14 6.65 4.58 86.38 0.40 7.05 16 4 N -0.44 -21.96 2.64 -635.54 -1.68 -23.63 16 5 C -0.36 -17.23 9.10 84.04 0.76 -16.47 16 6 H 0.11 4.93 5.87 -2.91 -0.02 4.91 16 7 C 0.01 0.30 4.95 84.93 0.42 0.72 16 8 N -0.86 -41.42 8.61 21.66 0.19 -41.24 16 9 Si 0.97 38.11 29.62 68.60 2.03 40.14 16 10 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 11 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 12 H -0.28 -10.67 7.11 99.48 0.71 -9.97 16 13 C 0.45 21.18 6.64 87.66 0.58 21.76 16 14 O -0.64 -33.68 15.44 -3.05 -0.05 -33.72 16 15 C -0.10 -3.58 2.33 -10.27 -0.02 -3.61 16 16 H 0.11 4.00 6.84 -2.39 -0.02 3.99 16 17 C -0.11 -3.29 6.40 32.07 0.21 -3.09 16 18 C 0.11 2.84 6.93 86.86 0.60 3.44 16 19 N -0.60 -19.93 3.33 -942.09 -3.13 -23.07 16 20 C 0.66 22.52 7.93 129.79 1.03 23.55 16 21 O -0.60 -23.29 12.21 19.80 0.24 -23.05 16 22 O -0.36 -10.00 9.42 -55.48 -0.52 -10.52 16 23 C 0.12 2.64 1.13 -10.79 -0.01 2.63 16 24 C -0.18 -3.85 8.37 71.98 0.60 -3.25 16 25 C -0.13 -1.80 8.85 71.98 0.64 -1.16 16 26 C -0.18 -4.06 8.37 71.98 0.60 -3.45 16 27 C 0.16 5.87 6.28 86.73 0.55 6.42 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 3.45 6.60 -2.38 -0.02 3.43 16 33 H 0.09 4.54 5.73 -2.39 -0.01 4.52 16 34 H 0.02 1.15 7.54 -2.38 -0.02 1.13 16 35 H 0.27 12.32 8.31 -92.71 -0.77 11.55 16 36 H 0.07 2.45 7.22 -2.39 -0.02 2.43 16 37 H 0.11 2.74 8.14 -2.38 -0.02 2.73 16 38 H 0.10 2.15 8.04 -2.39 -0.02 2.13 16 39 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 1.61 5.88 -2.39 -0.01 1.59 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.05 1.64 5.88 -2.39 -0.01 1.62 16 47 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 48 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.07 2.78 7.89 -2.39 -0.02 2.76 16 50 H 0.04 1.83 7.81 -2.39 -0.02 1.82 16 Total: -1.00 -62.94 389.45 5.23 -57.71 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: 0.92 Total: 31.18 kcal Atomic # 6 Polarization: 18.96 SS G_CDS: 7.24 Total: 26.19 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -4.62 Total: -87.94 kcal Atomic # 8 Polarization: -66.96 SS G_CDS: -0.33 Total: -67.29 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -62.94 5.23 -57.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077738519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.683 kcal (2) G-P(sol) polarization free energy of solvation -62.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds