Wall clock time and date at job start Tue Mar 31 2020 14:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47170 * 2 1 4 4 C 1.53001 * 109.47412 * 239.99580 * 2 1 3 5 5 O 1.45202 * 109.46660 * 119.99552 * 2 1 3 6 6 C 1.34638 * 116.99941 * 60.00407 * 5 2 1 7 7 O 1.21512 * 120.00087 * 359.97438 * 6 5 2 8 8 N 1.34770 * 120.00151 * 179.97438 * 6 5 2 9 9 C 1.46504 * 120.00336 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47128 * 180.02562 * 9 8 6 11 11 C 1.50698 * 109.46695 * 179.97438 * 10 9 8 12 12 O 1.21296 * 120.00535 * 353.53821 * 11 10 9 13 13 N 1.34783 * 119.99658 * 173.53466 * 11 10 9 14 14 C 1.37092 * 119.99974 * 356.29338 * 13 11 10 15 15 H 1.07993 * 119.99927 * 232.08763 * 14 13 11 16 16 C 1.38955 * 119.99932 * 52.09031 * 14 13 11 17 17 N 1.31407 * 120.00086 * 26.89776 * 16 14 13 18 18 Si 1.86801 * 119.99861 * 206.89822 * 16 14 13 19 19 H 1.48497 * 109.47125 * 59.99692 * 18 16 14 20 20 H 1.48497 * 109.46935 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47087 * 299.99736 * 18 16 14 22 22 C 1.46503 * 119.99837 * 176.01540 * 13 11 10 23 23 C 1.54259 * 110.03575 * 237.91020 * 22 13 11 24 24 C 1.54957 * 104.16212 * 217.13936 * 23 22 13 25 25 C 1.54886 * 102.77959 * 37.88552 * 24 23 22 26 26 C 1.53877 * 110.02882 * 120.69198 * 22 13 11 27 27 H 1.08999 * 109.47571 * 300.00750 * 1 2 3 28 28 H 1.09002 * 109.46656 * 60.00215 * 1 2 3 29 29 H 1.08999 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47457 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47155 * 299.99480 * 3 2 1 32 32 H 1.09004 * 109.47743 * 59.99605 * 3 2 1 33 33 H 1.09006 * 109.46714 * 300.00510 * 4 2 1 34 34 H 1.09002 * 109.46558 * 60.00225 * 4 2 1 35 35 H 1.08997 * 109.47256 * 180.02562 * 4 2 1 36 36 H 0.97002 * 120.00290 * 0.02562 * 8 6 5 37 37 H 1.08992 * 109.47151 * 60.00070 * 9 8 6 38 38 H 1.09002 * 109.46773 * 299.99641 * 9 8 6 39 39 H 1.09000 * 109.47047 * 60.00139 * 10 9 8 40 40 H 1.08995 * 109.47021 * 299.99751 * 10 9 8 41 41 H 0.97000 * 119.99826 * 184.89277 * 17 16 14 42 42 H 1.09000 * 110.01435 * 359.30423 * 22 13 11 43 43 H 1.09003 * 110.48532 * 335.78921 * 23 22 13 44 44 H 1.08999 * 110.48971 * 98.42191 * 23 22 13 45 45 H 1.08996 * 110.72140 * 279.57080 * 24 23 22 46 46 H 1.09004 * 110.92214 * 156.29253 * 24 23 22 47 47 H 1.08998 * 110.49052 * 203.40538 * 25 24 23 48 48 H 1.09002 * 110.60168 * 80.81430 * 25 24 23 49 49 H 1.08999 * 110.02946 * 238.57062 * 26 22 13 50 50 H 1.09000 * 110.03096 * 359.97438 * 26 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1857 6 6 1.6522 -1.9723 1.3385 7 8 0.9509 -2.5094 0.5041 8 7 2.0678 -2.6656 2.4168 9 6 1.6737 -4.0668 2.5834 10 6 2.2738 -4.6147 3.8798 11 6 1.8679 -6.0558 4.0513 12 8 1.0745 -6.5580 3.2836 13 7 2.3866 -6.7867 5.0580 14 6 3.3399 -6.2428 5.8794 15 1 4.2694 -6.7661 6.0484 16 6 3.1103 -5.0182 6.4947 17 7 1.8804 -4.6297 6.7461 18 14 4.5499 -3.9244 6.9643 19 1 5.3236 -3.5744 5.7461 20 1 4.0412 -2.6829 7.6007 21 1 5.4292 -4.6461 7.9189 22 6 1.9272 -8.1603 5.2781 23 6 1.3657 -8.3072 6.7073 24 6 1.8119 -9.7248 7.1461 25 6 3.2297 -9.8425 6.5340 26 6 3.1117 -9.1363 5.1676 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6768 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2489 36 1 2.6274 -2.2367 3.0831 37 1 2.0395 -4.6500 1.7384 38 1 0.5868 -4.1355 2.6291 39 1 1.9077 -4.0314 4.7246 40 1 3.3607 -4.5459 3.8345 41 1 1.7159 -3.7458 7.1102 42 1 1.1609 -8.4190 4.5474 43 1 1.7949 -7.5515 7.3653 44 1 0.2782 -8.2340 6.6994 45 1 1.1480 -10.4835 6.7318 46 1 1.8527 -9.8010 8.2327 47 1 3.5018 -10.8894 6.4001 48 1 3.9622 -9.3364 7.1628 49 1 2.9198 -9.8691 4.3839 50 1 4.0282 -8.5879 4.9497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078209308.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:34 Heat of formation + Delta-G solvation = -130.757565 kcal Electronic energy + Delta-G solvation = -29131.202264 eV Core-core repulsion = 25158.107551 eV Total energy + Delta-G solvation = -3973.094713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.54958 -39.07538 -37.40280 -36.67866 -34.68828 -34.21219 -33.86947 -31.58309 -29.94502 -27.96267 -27.48049 -27.40530 -27.07036 -24.91396 -23.63291 -21.62098 -20.12496 -20.00817 -19.41091 -19.35800 -17.94617 -16.69921 -16.28292 -16.08835 -15.77924 -15.34223 -14.80276 -14.79237 -14.57174 -14.36807 -14.17894 -14.00575 -13.44918 -13.26358 -12.93473 -12.63553 -12.58297 -12.38725 -12.22820 -11.93277 -11.91115 -11.73340 -11.53216 -11.49774 -11.28977 -11.22782 -10.96037 -10.73319 -10.65427 -10.57630 -10.49651 -10.43825 -10.36558 -10.28810 -9.99390 -9.87803 -9.67858 -8.84528 -8.77407 -8.38666 -7.39709 -6.49993 -4.28720 2.38963 3.05185 3.10500 3.15197 3.16901 3.96534 4.06614 4.33485 4.67539 4.71119 4.72767 4.81541 4.85997 5.35339 5.35836 5.37261 5.46035 5.49468 5.55308 5.60593 5.67860 5.76051 5.81696 5.89465 5.89957 6.07581 6.14077 6.21954 6.24081 6.27093 6.30209 6.32738 6.38270 6.45914 6.50077 6.53612 6.59933 6.71491 6.73141 6.78972 6.90139 6.95467 7.10235 7.28643 7.37706 7.74077 7.93795 8.56062 8.65094 8.82705 9.51212 9.95305 10.50461 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.003046 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.996723 B = 9188.979365 C =10187.239112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.369 6.369 6 C 0.647 3.353 7 O -0.570 6.570 8 N -0.706 5.706 9 C 0.152 3.848 10 C -0.143 4.143 11 C 0.516 3.484 12 O -0.610 6.610 13 N -0.444 5.444 14 C -0.338 4.338 15 H 0.083 0.917 16 C 0.055 3.945 17 N -0.844 5.844 18 Si 0.893 3.107 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.271 1.271 22 C 0.132 3.868 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.116 4.116 26 C -0.127 4.127 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.404 0.596 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.271 0.729 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.051 0.949 48 H 0.064 0.936 49 H 0.052 0.948 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.439 6.384 -5.638 8.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.284 6.284 6 C 0.400 3.600 7 O -0.460 6.460 8 N -0.364 5.364 9 C 0.030 3.970 10 C -0.183 4.183 11 C 0.306 3.694 12 O -0.496 6.496 13 N -0.163 5.163 14 C -0.465 4.465 15 H 0.101 0.899 16 C -0.153 4.153 17 N -0.479 5.479 18 Si 0.718 3.282 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.196 1.196 22 C 0.028 3.972 23 C -0.159 4.159 24 C -0.161 4.161 25 C -0.154 4.154 26 C -0.165 4.165 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.238 0.762 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.071 0.929 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.581 6.017 -6.315 8.864 hybrid contribution 0.919 0.929 0.784 1.524 sum 2.500 6.946 -5.531 9.224 Atomic orbital electron populations 1.22518 0.94116 1.05258 1.02197 1.21999 0.94343 0.91402 0.82389 1.21848 1.02161 0.92771 1.02915 1.22517 1.01465 1.03720 0.96351 1.86294 1.71793 1.24100 1.46210 1.18076 0.79149 0.80237 0.82570 1.90885 1.41254 1.70370 1.43443 1.44924 1.55002 1.13373 1.23121 1.21203 1.00624 0.76730 0.98473 1.21870 1.02165 0.96556 0.97729 1.19905 0.81914 0.87431 0.80189 1.90538 1.39100 1.73600 1.46363 1.43409 1.36821 1.10389 1.25696 1.19118 0.96118 1.04645 1.26661 0.89906 1.25491 0.96301 0.99718 0.93799 1.70156 1.19934 1.19581 1.38206 0.86558 0.82437 0.79890 0.79325 1.19409 1.20792 1.19588 1.21596 0.94958 0.84234 0.96407 1.22593 0.99383 0.96251 0.97639 1.22453 0.96466 0.97782 0.99408 1.22254 0.97292 0.98834 0.97022 1.22398 1.00036 0.97743 0.96336 0.92231 0.91399 0.89184 0.91562 0.90347 0.91542 0.89201 0.91389 0.92269 0.76224 0.91323 0.90827 0.86670 0.89539 0.91896 0.90398 0.88974 0.93110 0.92570 0.92435 0.92997 0.91711 0.92919 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 8.37 37.16 0.31 -1.91 16 2 C 0.14 1.67 1.13 -90.62 -0.10 1.57 16 3 C -0.14 -1.27 8.85 37.15 0.33 -0.94 16 4 C -0.18 -2.19 8.37 37.16 0.31 -1.87 16 5 O -0.37 -5.56 9.94 -40.32 -0.40 -5.96 16 6 C 0.65 11.22 8.06 54.05 0.44 11.65 16 7 O -0.57 -11.05 11.88 -19.28 -0.23 -11.28 16 8 N -0.71 -11.96 5.56 -65.28 -0.36 -12.32 16 9 C 0.15 2.97 4.99 -4.04 -0.02 2.95 16 10 C -0.14 -3.00 3.97 -27.88 -0.11 -3.11 16 11 C 0.52 12.51 7.26 -10.98 -0.08 12.43 16 12 O -0.61 -16.11 15.34 5.54 0.09 -16.03 16 13 N -0.44 -10.39 2.37 -106.54 -0.25 -10.64 16 14 C -0.34 -7.81 6.79 -14.93 -0.10 -7.91 16 15 H 0.08 1.90 7.29 -52.49 -0.38 1.51 16 16 C 0.05 1.24 3.35 -17.47 -0.06 1.18 16 17 N -0.84 -20.33 11.58 55.50 0.64 -19.68 16 18 Si 0.89 17.66 29.63 -169.99 -5.04 12.62 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 C 0.13 2.82 3.29 -66.81 -0.22 2.60 16 23 C -0.12 -2.41 6.42 -25.04 -0.16 -2.57 16 24 C -0.12 -1.98 6.91 -24.70 -0.17 -2.16 16 25 C -0.12 -1.85 6.83 -25.07 -0.17 -2.02 16 26 C -0.13 -2.31 6.26 -25.61 -0.16 -2.47 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.35 5.88 -51.93 -0.31 1.04 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.32 5.88 -51.93 -0.31 1.02 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.40 6.03 8.58 -40.82 -0.35 5.68 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.07 1.58 8.03 -51.93 -0.42 1.16 16 39 H 0.12 2.53 5.46 -51.93 -0.28 2.25 16 40 H 0.09 1.73 7.75 -51.93 -0.40 1.33 16 41 H 0.27 6.22 8.32 -40.82 -0.34 5.88 16 42 H 0.08 1.78 6.95 -51.93 -0.36 1.42 16 43 H 0.09 2.09 7.02 -51.93 -0.36 1.72 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.07 1.36 6.95 -51.93 -0.36 1.00 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -27.60 390.56 -8.22 -35.83 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -8.59 Total: 14.16 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 0.03 Total: 7.42 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.03 Total: -42.65 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.54 Total: -33.27 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.04 Total: 12.62 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -27.60 -8.22 -35.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078209308.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.931 kcal (2) G-P(sol) polarization free energy of solvation -27.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds