Wall clock time and date at job start Tue Mar 31 2020 14:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47170 * 2 1 4 4 C 1.53001 * 109.47412 * 239.99580 * 2 1 3 5 5 O 1.45202 * 109.46660 * 119.99552 * 2 1 3 6 6 C 1.34638 * 116.99941 * 60.00407 * 5 2 1 7 7 O 1.21512 * 120.00087 * 359.97438 * 6 5 2 8 8 N 1.34770 * 120.00151 * 179.97438 * 6 5 2 9 9 C 1.46504 * 120.00336 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47128 * 180.02562 * 9 8 6 11 11 C 1.50698 * 109.46695 * 179.97438 * 10 9 8 12 12 O 1.21296 * 120.00535 * 353.53821 * 11 10 9 13 13 N 1.34783 * 119.99658 * 173.53466 * 11 10 9 14 14 C 1.37092 * 119.99974 * 356.29338 * 13 11 10 15 15 H 1.07993 * 119.99927 * 232.08763 * 14 13 11 16 16 C 1.38955 * 119.99932 * 52.09031 * 14 13 11 17 17 N 1.31407 * 120.00086 * 26.89776 * 16 14 13 18 18 Si 1.86801 * 119.99861 * 206.89822 * 16 14 13 19 19 H 1.48497 * 109.47125 * 59.99692 * 18 16 14 20 20 H 1.48497 * 109.46935 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47087 * 299.99736 * 18 16 14 22 22 C 1.46503 * 119.99837 * 176.01540 * 13 11 10 23 23 C 1.54259 * 110.03575 * 237.91020 * 22 13 11 24 24 C 1.54957 * 104.16212 * 217.13936 * 23 22 13 25 25 C 1.54886 * 102.77959 * 37.88552 * 24 23 22 26 26 C 1.53877 * 110.02882 * 120.69198 * 22 13 11 27 27 H 1.08999 * 109.47571 * 300.00750 * 1 2 3 28 28 H 1.09002 * 109.46656 * 60.00215 * 1 2 3 29 29 H 1.08999 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47457 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47155 * 299.99480 * 3 2 1 32 32 H 1.09004 * 109.47743 * 59.99605 * 3 2 1 33 33 H 1.09006 * 109.46714 * 300.00510 * 4 2 1 34 34 H 1.09002 * 109.46558 * 60.00225 * 4 2 1 35 35 H 1.08997 * 109.47256 * 180.02562 * 4 2 1 36 36 H 0.97002 * 120.00290 * 0.02562 * 8 6 5 37 37 H 1.08992 * 109.47151 * 60.00070 * 9 8 6 38 38 H 1.09002 * 109.46773 * 299.99641 * 9 8 6 39 39 H 1.09000 * 109.47047 * 60.00139 * 10 9 8 40 40 H 1.08995 * 109.47021 * 299.99751 * 10 9 8 41 41 H 0.97000 * 119.99826 * 184.89277 * 17 16 14 42 42 H 1.09000 * 110.01435 * 359.30423 * 22 13 11 43 43 H 1.09003 * 110.48532 * 335.78921 * 23 22 13 44 44 H 1.08999 * 110.48971 * 98.42191 * 23 22 13 45 45 H 1.08996 * 110.72140 * 279.57080 * 24 23 22 46 46 H 1.09004 * 110.92214 * 156.29253 * 24 23 22 47 47 H 1.08998 * 110.49052 * 203.40538 * 25 24 23 48 48 H 1.09002 * 110.60168 * 80.81430 * 25 24 23 49 49 H 1.08999 * 110.02946 * 238.57062 * 26 22 13 50 50 H 1.09000 * 110.03096 * 359.97438 * 26 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1857 6 6 1.6522 -1.9723 1.3385 7 8 0.9509 -2.5094 0.5041 8 7 2.0678 -2.6656 2.4168 9 6 1.6737 -4.0668 2.5834 10 6 2.2738 -4.6147 3.8798 11 6 1.8679 -6.0558 4.0513 12 8 1.0745 -6.5580 3.2836 13 7 2.3866 -6.7867 5.0580 14 6 3.3399 -6.2428 5.8794 15 1 4.2694 -6.7661 6.0484 16 6 3.1103 -5.0182 6.4947 17 7 1.8804 -4.6297 6.7461 18 14 4.5499 -3.9244 6.9643 19 1 5.3236 -3.5744 5.7461 20 1 4.0412 -2.6829 7.6007 21 1 5.4292 -4.6461 7.9189 22 6 1.9272 -8.1603 5.2781 23 6 1.3657 -8.3072 6.7073 24 6 1.8119 -9.7248 7.1461 25 6 3.2297 -9.8425 6.5340 26 6 3.1117 -9.1363 5.1676 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6768 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2489 36 1 2.6274 -2.2367 3.0831 37 1 2.0395 -4.6500 1.7384 38 1 0.5868 -4.1355 2.6291 39 1 1.9077 -4.0314 4.7246 40 1 3.3607 -4.5459 3.8345 41 1 1.7159 -3.7458 7.1102 42 1 1.1609 -8.4190 4.5474 43 1 1.7949 -7.5515 7.3653 44 1 0.2782 -8.2340 6.6994 45 1 1.1480 -10.4835 6.7318 46 1 1.8527 -9.8010 8.2327 47 1 3.5018 -10.8894 6.4001 48 1 3.9622 -9.3364 7.1628 49 1 2.9198 -9.8691 4.3839 50 1 4.0282 -8.5879 4.9497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078209308.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:33 Heat of formation + Delta-G solvation = -146.566992 kcal Electronic energy + Delta-G solvation = -29131.887813 eV Core-core repulsion = 25158.107551 eV Total energy + Delta-G solvation = -3973.780261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.83408 -40.84884 -38.77110 -38.21206 -36.22397 -35.97376 -34.96074 -33.35092 -31.58021 -29.45523 -28.65038 -28.35889 -28.28134 -26.71549 -25.16635 -22.98566 -21.61032 -21.40791 -21.08292 -20.84525 -19.28034 -18.38047 -17.61720 -17.47001 -17.40993 -17.06152 -16.37694 -16.19104 -16.07978 -15.71285 -15.45106 -15.33778 -14.96961 -14.57967 -14.42297 -14.17078 -14.08305 -13.45741 -13.34981 -13.21116 -13.15657 -12.99711 -12.89215 -12.86050 -12.64322 -12.52464 -12.33716 -12.29748 -12.25618 -12.21210 -12.05175 -11.86978 -11.81512 -11.39676 -11.37718 -11.32983 -11.15876 -10.64205 -10.33023 -10.22424 -9.23042 -8.28820 -6.13892 1.10578 1.47421 1.54604 1.60992 1.72262 2.12240 2.36057 2.91609 2.96536 3.26234 3.76485 3.80644 3.87734 3.91601 3.95423 3.97825 4.18798 4.19402 4.41811 4.52612 4.61845 4.62145 4.67490 4.72305 4.76948 4.80210 4.80798 4.83959 4.86286 4.88753 4.92509 4.97743 5.07770 5.09359 5.16269 5.17515 5.25409 5.26780 5.29487 5.36720 5.43512 5.51403 5.54557 5.57233 5.65764 6.13848 6.37538 6.71984 7.01334 7.30592 7.64478 8.11293 8.72667 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.003046 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.996723 B = 9188.979365 C =10187.239112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.120 3.880 3 C -0.133 4.133 4 C -0.180 4.180 5 O -0.367 6.367 6 C 0.647 3.353 7 O -0.594 6.594 8 N -0.700 5.700 9 C 0.171 3.829 10 C -0.127 4.127 11 C 0.494 3.506 12 O -0.644 6.644 13 N -0.445 5.445 14 C -0.351 4.351 15 H 0.086 0.914 16 C 0.029 3.971 17 N -0.873 5.873 18 Si 0.952 3.048 19 H -0.257 1.257 20 H -0.283 1.283 21 H -0.270 1.270 22 C 0.118 3.882 23 C -0.116 4.116 24 C -0.113 4.113 25 C -0.108 4.108 26 C -0.121 4.121 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.415 0.585 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.273 0.727 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.084 0.916 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.168 7.355 -5.401 10.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.084 3.916 3 C -0.190 4.190 4 C -0.237 4.237 5 O -0.282 6.282 6 C 0.401 3.599 7 O -0.485 6.485 8 N -0.359 5.359 9 C 0.048 3.952 10 C -0.167 4.167 11 C 0.284 3.716 12 O -0.533 6.533 13 N -0.163 5.163 14 C -0.478 4.478 15 H 0.104 0.896 16 C -0.176 4.176 17 N -0.508 5.508 18 Si 0.775 3.225 19 H -0.181 1.181 20 H -0.209 1.209 21 H -0.195 1.195 22 C 0.015 3.985 23 C -0.155 4.155 24 C -0.150 4.150 25 C -0.145 4.145 26 C -0.159 4.159 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.251 0.749 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.103 0.897 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.340 6.999 -6.057 9.840 hybrid contribution 0.311 0.638 0.695 0.993 sum 3.651 7.637 -5.362 10.020 Atomic orbital electron populations 1.22485 0.94160 1.03457 1.03711 1.22506 0.94619 0.92979 0.81480 1.21879 1.02494 0.90181 1.04444 1.22477 1.01714 1.02063 0.97450 1.86316 1.71623 1.22527 1.47712 1.18151 0.78714 0.80975 0.82104 1.90889 1.42190 1.71144 1.44240 1.44687 1.55196 1.12419 1.23636 1.20766 0.98890 0.78112 0.97450 1.21688 1.02663 0.94503 0.97812 1.20507 0.82049 0.88787 0.80221 1.90501 1.40695 1.74518 1.47575 1.43618 1.36416 1.11078 1.25217 1.19302 0.96172 1.05347 1.26940 0.89618 1.26108 0.98138 1.00170 0.93221 1.70232 1.21870 1.19917 1.38806 0.85644 0.79545 0.77977 0.79346 1.18105 1.20878 1.19499 1.21829 0.95984 0.84243 0.96492 1.22480 0.98337 0.98373 0.96276 1.22424 0.96805 0.95160 1.00636 1.22225 0.96931 1.00360 0.95021 1.22337 0.97787 0.97239 0.98564 0.92030 0.88591 0.92537 0.91065 0.87567 0.91250 0.92482 0.88632 0.91795 0.74879 0.92377 0.93263 0.87389 0.88368 0.91710 0.92817 0.91782 0.94365 0.90801 0.90666 0.89740 0.92031 0.91613 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.21 8.37 71.98 0.60 -3.61 16 2 C 0.12 2.79 1.13 -10.79 -0.01 2.77 16 3 C -0.13 -2.02 8.85 71.98 0.64 -1.38 16 4 C -0.18 -4.08 8.37 71.98 0.60 -3.47 16 5 O -0.37 -10.80 9.94 -55.48 -0.55 -11.35 16 6 C 0.65 22.74 8.06 129.79 1.05 23.78 16 7 O -0.59 -23.84 11.88 19.80 0.24 -23.61 16 8 N -0.70 -24.01 5.56 -590.85 -3.29 -27.29 16 9 C 0.17 6.96 4.99 86.38 0.43 7.40 16 10 C -0.13 -5.44 3.97 29.85 0.12 -5.32 16 11 C 0.49 24.88 7.26 87.66 0.64 25.51 16 12 O -0.64 -35.77 15.34 -3.08 -0.05 -35.82 16 13 N -0.45 -21.41 2.37 -609.38 -1.44 -22.85 16 14 C -0.35 -16.28 6.79 84.04 0.57 -15.71 16 15 H 0.09 3.90 7.29 -2.91 -0.02 3.88 16 16 C 0.03 1.33 3.35 84.93 0.28 1.61 16 17 N -0.87 -42.52 11.58 21.66 0.25 -42.27 16 18 Si 0.95 35.35 29.63 68.60 2.03 37.38 16 19 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 20 H -0.28 -10.54 7.11 99.48 0.71 -9.84 16 21 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 22 C 0.12 5.16 3.29 45.71 0.15 5.31 16 23 C -0.12 -4.71 6.42 31.69 0.20 -4.51 16 24 C -0.11 -3.41 6.91 31.91 0.22 -3.19 16 25 C -0.11 -3.16 6.83 31.67 0.22 -2.95 16 26 C -0.12 -4.32 6.26 31.32 0.20 -4.12 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 1.72 5.88 -2.39 -0.01 1.71 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.06 1.70 5.88 -2.38 -0.01 1.68 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.41 12.21 8.58 -92.71 -0.80 11.42 16 37 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.05 2.24 8.03 -2.39 -0.02 2.22 16 39 H 0.11 4.84 5.46 -2.39 -0.01 4.83 16 40 H 0.10 3.92 7.75 -2.39 -0.02 3.91 16 41 H 0.27 12.62 8.32 -92.71 -0.77 11.85 16 42 H 0.05 2.57 6.95 -2.39 -0.02 2.55 16 43 H 0.06 2.96 7.02 -2.39 -0.02 2.94 16 44 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.06 2.26 6.95 -2.39 -0.02 2.24 16 Total: -1.00 -62.24 390.56 3.23 -59.01 By element: Atomic # 1 Polarization: 44.54 SS G_CDS: 0.13 Total: 44.67 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: 5.90 Total: 22.13 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -4.48 Total: -92.41 kcal Atomic # 8 Polarization: -70.42 SS G_CDS: -0.36 Total: -70.78 kcal Atomic # 14 Polarization: 35.35 SS G_CDS: 2.03 Total: 37.38 kcal Total: -62.24 3.23 -59.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078209308.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.557 kcal (2) G-P(sol) polarization free energy of solvation -62.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds