Wall clock time and date at job start Tue Mar 31 2020 16:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47048 * 2 1 4 4 N 1.46500 * 109.47222 * 179.97438 * 3 2 1 5 5 C 1.36932 * 119.99700 * 90.00517 * 4 3 2 6 6 H 1.08005 * 120.00067 * 343.76283 * 5 4 3 7 7 C 1.38815 * 120.00056 * 163.48918 * 5 4 3 8 8 N 1.31611 * 119.99767 * 338.92886 * 7 5 4 9 9 Si 1.86805 * 120.00080 * 158.92972 * 7 5 4 10 10 H 1.48495 * 109.47110 * 90.00055 * 9 7 5 11 11 H 1.48498 * 109.46795 * 209.99997 * 9 7 5 12 12 H 1.48500 * 109.47023 * 329.99713 * 9 7 5 13 13 C 1.46498 * 119.99994 * 270.00187 * 4 3 2 14 14 C 1.50701 * 109.47063 * 276.05993 * 13 4 3 15 15 O 1.21279 * 120.00055 * 0.02562 * 14 13 4 16 16 N 1.34774 * 119.99761 * 180.02562 * 14 13 4 17 17 C 1.46924 * 120.63281 * 359.72485 * 16 14 13 18 18 C 1.53629 * 108.54228 * 126.36803 * 17 16 14 19 19 C 1.53036 * 109.24126 * 54.85825 * 18 17 16 20 20 C 1.53038 * 109.53861 * 298.50849 * 19 18 17 21 21 H 1.08996 * 109.49949 * 301.41476 * 20 19 18 22 22 C 1.50703 * 109.50110 * 181.31592 * 20 19 18 23 23 O 1.20830 * 119.99377 * 0.16426 * 22 20 19 24 24 O 1.34220 * 120.00315 * 180.16171 * 22 20 19 25 25 C 1.45207 * 117.00080 * 180.02562 * 24 22 20 26 26 C 1.53002 * 109.47053 * 180.02562 * 25 24 22 27 27 C 1.46933 * 120.62820 * 180.02562 * 16 14 13 28 28 H 1.09005 * 109.46955 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47135 * 299.99595 * 1 2 3 30 30 H 1.09000 * 109.47661 * 60.00063 * 1 2 3 31 31 H 1.09006 * 109.47538 * 240.00441 * 2 1 3 32 32 H 1.09000 * 109.47661 * 119.99937 * 2 1 3 33 33 H 1.09000 * 109.46822 * 60.00214 * 3 2 1 34 34 H 1.08992 * 109.47128 * 300.00565 * 3 2 1 35 35 H 0.97004 * 120.00085 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47475 * 36.06809 * 13 4 3 37 37 H 1.09005 * 109.46831 * 156.07017 * 13 4 3 38 38 H 1.09006 * 109.58813 * 246.19975 * 17 16 14 39 39 H 1.08991 * 109.58680 * 6.62585 * 17 16 14 40 40 H 1.08993 * 109.63136 * 294.86281 * 18 17 16 41 41 H 1.09002 * 109.42646 * 174.72446 * 18 17 16 42 42 H 1.09005 * 109.45939 * 178.48824 * 19 18 17 43 43 H 1.09001 * 109.46283 * 58.53411 * 19 18 17 44 44 H 1.08996 * 109.46457 * 300.00032 * 25 24 22 45 45 H 1.09002 * 109.47082 * 60.00090 * 25 24 22 46 46 H 1.09002 * 109.47163 * 60.00066 * 26 25 24 47 47 H 1.08997 * 109.47090 * 179.97438 * 26 25 24 48 48 H 1.09000 * 109.47235 * 300.00063 * 26 25 24 49 49 H 1.09001 * 109.58787 * 353.37584 * 27 16 14 50 50 H 1.09005 * 109.58563 * 113.65684 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1900 1.4426 -1.1850 6 1 3.6826 1.1810 -2.1019 7 6 5.5352 1.7842 -1.2093 8 7 6.0527 2.4903 -0.2265 9 14 6.6110 1.2419 -2.6370 10 1 6.5837 2.2792 -3.6992 11 1 8.0058 1.0556 -2.1627 12 1 6.0987 -0.0402 -3.1837 13 6 4.2369 1.4428 1.2696 14 6 4.3579 2.8557 1.7796 15 8 3.8794 3.7723 1.1456 16 7 4.9978 3.1008 2.9401 17 6 5.5774 2.0004 3.7222 18 6 7.0561 2.3185 3.9918 19 6 7.1627 3.6899 4.6624 20 6 6.6027 4.7627 3.7256 21 1 7.1566 4.7512 2.7869 22 6 6.7377 6.1167 4.3735 23 8 7.2340 6.2144 5.4708 24 8 6.3068 7.2138 3.7316 25 6 6.4693 8.4843 4.4156 26 6 5.9238 9.6108 3.5356 27 6 5.1234 4.4729 3.4504 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6765 1.9564 -0.8899 35 1 6.9928 2.7288 -0.2433 36 1 3.6989 0.8378 1.9995 37 1 5.2321 1.0259 1.1150 38 1 5.0435 1.9031 4.6676 39 1 5.4991 1.0707 3.1587 40 1 7.6057 2.3299 3.0507 41 1 7.4764 1.5580 4.6499 42 1 8.2085 3.9076 4.8797 43 1 6.5925 3.6854 5.5913 44 1 5.9219 8.4622 5.3578 45 1 7.5271 8.6575 4.6139 46 1 4.8660 9.4374 3.3377 47 1 6.0454 10.5644 4.0492 48 1 6.4708 9.6330 2.5931 49 1 4.7454 5.1752 2.7074 50 1 4.5512 4.5736 4.3727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118004458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:48 Heat of formation + Delta-G solvation = -107.072072 kcal Electronic energy + Delta-G solvation = -29680.047690 eV Core-core repulsion = 25707.980057 eV Total energy + Delta-G solvation = -3972.067633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.64037 -39.02531 -37.07556 -36.34075 -35.39172 -32.94831 -32.49791 -31.80388 -30.95824 -30.48334 -27.35150 -25.51603 -25.00566 -24.25400 -22.96972 -22.04876 -21.47258 -20.31411 -19.86136 -18.40897 -17.56444 -16.75018 -16.57833 -16.39278 -15.74261 -15.18229 -14.89208 -14.56926 -14.29675 -14.01749 -13.77711 -13.70535 -13.52759 -13.32545 -13.06789 -12.90482 -12.70483 -12.45935 -12.26961 -12.12035 -11.94739 -11.65829 -11.50361 -11.37032 -11.19676 -11.00377 -10.80405 -10.72224 -10.69753 -10.64601 -10.56219 -10.37023 -10.33223 -10.26724 -10.12108 -9.82862 -9.72587 -8.77743 -8.25172 -7.79939 -6.81341 -5.78430 -3.09778 2.24820 2.69443 3.39305 3.46839 3.48924 3.82250 4.18201 4.53710 4.69567 4.81614 4.82805 4.89710 5.03848 5.13890 5.20908 5.32536 5.34624 5.43417 5.46868 5.59226 5.65026 5.66970 5.69803 5.75578 5.80505 5.88719 5.95236 5.99395 6.02978 6.12052 6.14534 6.19438 6.27110 6.37622 6.43630 6.46403 6.50447 6.55848 6.62298 6.72157 6.94374 7.07107 7.19212 7.34823 7.79917 7.81093 8.29865 8.48662 9.18072 9.64029 9.87677 10.31367 11.30864 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.003690 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.668600 B = 7587.046937 C = 8066.089621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.152 3.848 4 N -0.573 5.573 5 C -0.247 4.247 6 H 0.074 0.926 7 C 0.000 4.000 8 N -0.897 5.897 9 Si 0.901 3.099 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.281 1.281 13 C 0.167 3.833 14 C 0.532 3.468 15 O -0.526 6.526 16 N -0.627 5.627 17 C 0.117 3.883 18 C -0.134 4.134 19 C -0.097 4.097 20 C -0.095 4.095 21 H 0.116 0.884 22 C 0.473 3.527 23 O -0.516 6.516 24 O -0.352 6.352 25 C 0.061 3.939 26 C -0.154 4.154 27 C 0.132 3.868 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.034 0.966 34 H 0.046 0.954 35 H 0.251 0.749 36 H 0.034 0.966 37 H 0.105 0.895 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.067 0.933 49 H 0.098 0.902 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.289 3.128 11.269 11.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.025 3.975 4 N -0.292 5.292 5 C -0.376 4.376 6 H 0.092 0.908 7 C -0.197 4.197 8 N -0.542 5.542 9 Si 0.731 3.269 10 H -0.217 1.217 11 H -0.217 1.217 12 H -0.207 1.207 13 C 0.037 3.963 14 C 0.321 3.679 15 O -0.398 6.398 16 N -0.365 5.365 17 C -0.007 4.007 18 C -0.172 4.172 19 C -0.135 4.135 20 C -0.115 4.115 21 H 0.134 0.866 22 C 0.316 3.684 23 O -0.404 6.404 24 O -0.268 6.268 25 C -0.013 4.013 26 C -0.211 4.211 27 C 0.007 3.993 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.122 0.878 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.096 0.904 48 H 0.087 0.913 49 H 0.117 0.883 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.290 3.739 11.167 11.779 hybrid contribution 1.056 0.158 -0.539 1.196 sum 0.766 3.897 10.627 11.345 Atomic orbital electron populations 1.21719 0.97258 1.00385 1.01126 1.22112 0.93788 1.00783 1.01531 1.20779 0.84559 0.92855 0.99309 1.43847 0.99694 1.83877 1.01786 1.19216 0.92153 1.39374 0.86886 0.90804 1.24765 0.98333 0.98683 0.97966 1.69924 1.12704 1.37895 1.33692 0.86308 0.79908 0.78562 0.82089 1.21727 1.21731 1.20691 1.20604 0.98714 0.90434 0.86567 1.22284 0.74711 0.94204 0.76714 1.90508 1.48064 1.46712 1.54557 1.48386 1.59210 1.04870 1.24074 1.21614 0.92535 0.91064 0.95516 1.22008 0.97665 0.95965 1.01571 1.21372 1.01331 0.93319 0.97442 1.21565 1.01454 0.87356 1.01129 0.86584 1.23842 0.73705 0.86851 0.83959 1.90621 1.41564 1.87328 1.20865 1.86601 1.75283 1.15933 1.48994 1.23002 1.01505 0.80859 0.95929 1.21807 1.02659 0.96030 1.00559 1.21114 0.91248 0.87376 0.99521 0.93740 0.93417 0.93202 0.92178 0.93089 0.94802 0.93549 0.93846 0.94840 0.87760 0.92703 0.89481 0.90528 0.90909 0.91370 0.91344 0.91398 0.91460 0.91260 0.90449 0.91344 0.88335 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.15 0.37 -1.72 16 2 C -0.14 -2.49 6.26 -26.73 -0.17 -2.66 16 3 C 0.15 3.21 5.64 -4.04 -0.02 3.19 16 4 N -0.57 -14.04 2.03 -174.61 -0.35 -14.40 16 5 C -0.25 -6.64 9.67 -15.06 -0.15 -6.78 16 6 H 0.07 1.97 7.92 -52.48 -0.42 1.56 16 7 C 0.00 0.00 4.89 -17.43 -0.09 -0.08 16 8 N -0.90 -24.47 9.26 55.49 0.51 -23.95 16 9 Si 0.90 21.40 29.60 -169.99 -5.03 16.37 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 C 0.17 3.75 3.72 -5.19 -0.02 3.73 16 14 C 0.53 12.18 5.91 -10.99 -0.06 12.12 16 15 O -0.53 -14.34 15.56 5.56 0.09 -14.25 16 16 N -0.63 -11.53 2.97 -172.47 -0.51 -12.04 16 17 C 0.12 1.68 6.37 -3.48 -0.02 1.66 16 18 C -0.13 -1.74 6.10 -26.39 -0.16 -1.90 16 19 C -0.10 -1.29 4.46 -26.69 -0.12 -1.41 16 20 C -0.09 -1.45 2.78 -91.63 -0.25 -1.71 16 21 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 22 C 0.47 7.28 7.26 36.01 0.26 7.54 16 23 O -0.52 -8.52 15.73 -18.75 -0.29 -8.82 16 24 O -0.35 -5.24 10.15 -39.23 -0.40 -5.64 16 25 C 0.06 0.70 6.19 37.16 0.23 0.93 16 26 C -0.15 -1.41 10.29 37.16 0.38 -1.03 16 27 C 0.13 2.24 5.64 -3.69 -0.02 2.22 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.03 0.71 8.07 -51.93 -0.42 0.29 16 34 H 0.05 1.02 8.04 -51.93 -0.42 0.61 16 35 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.03 0.66 7.91 -51.93 -0.41 0.24 16 37 H 0.10 2.48 5.89 -51.93 -0.31 2.17 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.27 5.93 -51.93 -0.31 0.96 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 43 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 44 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16 45 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.10 1.95 7.01 -51.93 -0.36 1.59 16 50 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 399.08 15.07 6.01 6.01 Total: -1.00 -32.25 399.08 -8.78 -41.02 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.96 Total: 1.59 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 0.16 Total: 14.10 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.35 Total: -50.39 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.61 Total: -28.71 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.25 -8.78 -41.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118004458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.048 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds