Wall clock time and date at job start Tue Mar 31 2020 16:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47048 * 2 1 4 4 N 1.46500 * 109.47222 * 179.97438 * 3 2 1 5 5 C 1.36932 * 119.99700 * 90.00517 * 4 3 2 6 6 H 1.08005 * 120.00067 * 343.76283 * 5 4 3 7 7 C 1.38815 * 120.00056 * 163.48918 * 5 4 3 8 8 N 1.31611 * 119.99767 * 338.92886 * 7 5 4 9 9 Si 1.86805 * 120.00080 * 158.92972 * 7 5 4 10 10 H 1.48495 * 109.47110 * 90.00055 * 9 7 5 11 11 H 1.48498 * 109.46795 * 209.99997 * 9 7 5 12 12 H 1.48500 * 109.47023 * 329.99713 * 9 7 5 13 13 C 1.46498 * 119.99994 * 270.00187 * 4 3 2 14 14 C 1.50701 * 109.47063 * 276.05993 * 13 4 3 15 15 O 1.21279 * 120.00055 * 0.02562 * 14 13 4 16 16 N 1.34774 * 119.99761 * 180.02562 * 14 13 4 17 17 C 1.46924 * 120.63281 * 359.72485 * 16 14 13 18 18 C 1.53629 * 108.54228 * 126.36803 * 17 16 14 19 19 C 1.53036 * 109.24126 * 54.85825 * 18 17 16 20 20 C 1.53038 * 109.53861 * 298.50849 * 19 18 17 21 21 H 1.08996 * 109.49949 * 301.41476 * 20 19 18 22 22 C 1.50703 * 109.50110 * 181.31592 * 20 19 18 23 23 O 1.20830 * 119.99377 * 0.16426 * 22 20 19 24 24 O 1.34220 * 120.00315 * 180.16171 * 22 20 19 25 25 C 1.45207 * 117.00080 * 180.02562 * 24 22 20 26 26 C 1.53002 * 109.47053 * 180.02562 * 25 24 22 27 27 C 1.46933 * 120.62820 * 180.02562 * 16 14 13 28 28 H 1.09005 * 109.46955 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47135 * 299.99595 * 1 2 3 30 30 H 1.09000 * 109.47661 * 60.00063 * 1 2 3 31 31 H 1.09006 * 109.47538 * 240.00441 * 2 1 3 32 32 H 1.09000 * 109.47661 * 119.99937 * 2 1 3 33 33 H 1.09000 * 109.46822 * 60.00214 * 3 2 1 34 34 H 1.08992 * 109.47128 * 300.00565 * 3 2 1 35 35 H 0.97004 * 120.00085 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47475 * 36.06809 * 13 4 3 37 37 H 1.09005 * 109.46831 * 156.07017 * 13 4 3 38 38 H 1.09006 * 109.58813 * 246.19975 * 17 16 14 39 39 H 1.08991 * 109.58680 * 6.62585 * 17 16 14 40 40 H 1.08993 * 109.63136 * 294.86281 * 18 17 16 41 41 H 1.09002 * 109.42646 * 174.72446 * 18 17 16 42 42 H 1.09005 * 109.45939 * 178.48824 * 19 18 17 43 43 H 1.09001 * 109.46283 * 58.53411 * 19 18 17 44 44 H 1.08996 * 109.46457 * 300.00032 * 25 24 22 45 45 H 1.09002 * 109.47082 * 60.00090 * 25 24 22 46 46 H 1.09002 * 109.47163 * 60.00066 * 26 25 24 47 47 H 1.08997 * 109.47090 * 179.97438 * 26 25 24 48 48 H 1.09000 * 109.47235 * 300.00063 * 26 25 24 49 49 H 1.09001 * 109.58787 * 353.37584 * 27 16 14 50 50 H 1.09005 * 109.58563 * 113.65684 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1900 1.4426 -1.1850 6 1 3.6826 1.1810 -2.1019 7 6 5.5352 1.7842 -1.2093 8 7 6.0527 2.4903 -0.2265 9 14 6.6110 1.2419 -2.6370 10 1 6.5837 2.2792 -3.6992 11 1 8.0058 1.0556 -2.1627 12 1 6.0987 -0.0402 -3.1837 13 6 4.2369 1.4428 1.2696 14 6 4.3579 2.8557 1.7796 15 8 3.8794 3.7723 1.1456 16 7 4.9978 3.1008 2.9401 17 6 5.5774 2.0004 3.7222 18 6 7.0561 2.3185 3.9918 19 6 7.1627 3.6899 4.6624 20 6 6.6027 4.7627 3.7256 21 1 7.1566 4.7512 2.7869 22 6 6.7377 6.1167 4.3735 23 8 7.2340 6.2144 5.4708 24 8 6.3068 7.2138 3.7316 25 6 6.4693 8.4843 4.4156 26 6 5.9238 9.6108 3.5356 27 6 5.1234 4.4729 3.4504 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6765 1.9564 -0.8899 35 1 6.9928 2.7288 -0.2433 36 1 3.6989 0.8378 1.9995 37 1 5.2321 1.0259 1.1150 38 1 5.0435 1.9031 4.6676 39 1 5.4991 1.0707 3.1587 40 1 7.6057 2.3299 3.0507 41 1 7.4764 1.5580 4.6499 42 1 8.2085 3.9076 4.8797 43 1 6.5925 3.6854 5.5913 44 1 5.9219 8.4622 5.3578 45 1 7.5271 8.6575 4.6139 46 1 4.8660 9.4374 3.3377 47 1 6.0454 10.5644 4.0492 48 1 6.4708 9.6330 2.5931 49 1 4.7454 5.1752 2.7074 50 1 4.5512 4.5736 4.3727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118004458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:47 Heat of formation + Delta-G solvation = -124.511461 kcal Electronic energy + Delta-G solvation = -29680.803918 eV Core-core repulsion = 25707.980057 eV Total energy + Delta-G solvation = -3972.823862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.86737 -40.55601 -38.51208 -37.68733 -37.07711 -34.61560 -33.89008 -32.85881 -32.40661 -31.98480 -29.04122 -27.26331 -26.20043 -25.67791 -23.98475 -23.66415 -22.65008 -21.84676 -21.19879 -19.93367 -18.84801 -18.49268 -17.90803 -17.72968 -17.10429 -16.99549 -16.41413 -15.93787 -15.80475 -15.53670 -15.22494 -14.99873 -14.77165 -14.64457 -14.49900 -14.27459 -13.86020 -13.75938 -13.57923 -13.48526 -13.24970 -13.00888 -12.95659 -12.63230 -12.58156 -12.49237 -12.46683 -12.20626 -12.09488 -11.99708 -11.91031 -11.89478 -11.71896 -11.60474 -11.55814 -11.48469 -11.32245 -10.68319 -10.17799 -9.30864 -8.72732 -7.81229 -5.14106 1.00396 1.48130 1.51053 1.59387 1.60215 2.31897 2.47134 2.62930 3.34387 3.54691 3.62391 3.70529 3.77016 3.96501 4.02676 4.08112 4.18286 4.21836 4.26840 4.29836 4.33191 4.44801 4.60749 4.64302 4.67982 4.76933 4.80241 4.80831 4.83924 4.86465 4.93301 4.95924 4.97791 5.07020 5.12106 5.12483 5.24777 5.27090 5.31133 5.38151 5.44759 5.46226 5.66170 5.70240 5.90965 6.34415 6.61798 6.84699 7.19723 7.82176 8.02048 8.33772 9.24603 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.003690 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.668600 B = 7587.046937 C = 8066.089621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.151 3.849 4 N -0.591 5.591 5 C -0.261 4.261 6 H 0.067 0.933 7 C -0.043 4.043 8 N -0.911 5.911 9 Si 0.960 3.040 10 H -0.300 1.300 11 H -0.290 1.290 12 H -0.272 1.272 13 C 0.171 3.829 14 C 0.531 3.469 15 O -0.582 6.582 16 N -0.624 5.624 17 C 0.108 3.892 18 C -0.125 4.125 19 C -0.090 4.090 20 C -0.089 4.089 21 H 0.094 0.906 22 C 0.479 3.521 23 O -0.525 6.525 24 O -0.368 6.368 25 C 0.052 3.948 26 C -0.149 4.149 27 C 0.136 3.864 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.031 0.969 34 H 0.027 0.973 35 H 0.244 0.756 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.109 0.891 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.107 0.893 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 2.146 13.135 13.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.169 4.169 3 C 0.026 3.974 4 N -0.311 5.311 5 C -0.391 4.391 6 H 0.085 0.915 7 C -0.239 4.239 8 N -0.557 5.557 9 Si 0.789 3.211 10 H -0.228 1.228 11 H -0.216 1.216 12 H -0.198 1.198 13 C 0.041 3.959 14 C 0.320 3.680 15 O -0.460 6.460 16 N -0.360 5.360 17 C -0.014 4.014 18 C -0.163 4.163 19 C -0.127 4.127 20 C -0.110 4.110 21 H 0.113 0.887 22 C 0.322 3.678 23 O -0.414 6.414 24 O -0.285 6.285 25 C -0.021 4.021 26 C -0.206 4.206 27 C 0.012 3.988 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.127 0.873 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.126 0.874 48 H 0.081 0.919 49 H 0.082 0.918 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.263 2.731 13.079 13.363 hybrid contribution 1.019 0.544 -1.074 1.578 sum 0.757 3.275 12.004 12.466 Atomic orbital electron populations 1.21665 0.94475 1.02057 1.01622 1.21921 0.96097 0.97598 1.01241 1.20883 0.83154 0.95160 0.98235 1.44087 1.00958 1.84186 1.01829 1.19403 0.92725 1.39202 0.87749 0.91540 1.25388 0.99240 0.99003 1.00269 1.70085 1.12185 1.38482 1.34902 0.85402 0.78350 0.77994 0.79316 1.22795 1.21598 1.19754 1.20595 0.98150 0.90614 0.86542 1.22285 0.74539 0.93764 0.77400 1.90476 1.50726 1.48032 1.56728 1.48303 1.57995 1.06550 1.23196 1.21955 0.93709 0.89509 0.96216 1.21956 0.96344 0.96890 1.01141 1.21364 1.01774 0.92393 0.97185 1.21476 0.99929 0.88585 1.00961 0.88743 1.23702 0.73451 0.86985 0.83653 1.90607 1.42102 1.87543 1.21166 1.86602 1.75066 1.17053 1.49768 1.23338 1.02283 0.79884 0.96597 1.21845 1.01970 0.96500 1.00295 1.21076 0.92705 0.85895 0.99170 0.91433 0.92506 0.93208 0.93430 0.92343 0.95012 0.95482 0.94606 0.91762 0.89315 0.89327 0.89621 0.93026 0.87315 0.90671 0.89980 0.90620 0.90842 0.91826 0.87448 0.91944 0.91820 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.91 71.98 0.71 -2.99 16 2 C -0.13 -4.38 6.26 30.59 0.19 -4.19 16 3 C 0.15 6.49 5.64 86.38 0.49 6.98 16 4 N -0.59 -29.46 2.03 -706.34 -1.44 -30.89 16 5 C -0.26 -14.33 9.67 84.04 0.81 -13.52 16 6 H 0.07 3.65 7.92 -2.91 -0.02 3.62 16 7 C -0.04 -2.36 4.89 84.86 0.41 -1.95 16 8 N -0.91 -51.00 9.26 21.65 0.20 -50.80 16 9 Si 0.96 44.82 29.60 68.60 2.03 46.85 16 10 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 C 0.17 7.71 3.72 85.63 0.32 8.03 16 14 C 0.53 24.77 5.91 87.66 0.52 25.29 16 15 O -0.58 -33.07 15.56 -3.03 -0.05 -33.11 16 16 N -0.62 -22.83 2.97 -817.97 -2.43 -25.26 16 17 C 0.11 2.91 6.37 86.51 0.55 3.46 16 18 C -0.13 -2.99 6.10 30.82 0.19 -2.81 16 19 C -0.09 -2.20 4.46 30.62 0.14 -2.06 16 20 C -0.09 -2.72 2.78 -11.45 -0.03 -2.75 16 21 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 22 C 0.48 14.53 7.26 71.24 0.52 15.05 16 23 O -0.52 -16.65 15.73 21.95 0.35 -16.31 16 24 O -0.37 -11.05 10.15 -51.32 -0.52 -11.57 16 25 C 0.05 1.16 6.19 71.98 0.45 1.60 16 26 C -0.15 -2.61 10.29 71.98 0.74 -1.87 16 27 C 0.14 4.65 5.64 86.37 0.49 5.13 16 28 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.03 1.35 8.07 -2.39 -0.02 1.33 16 34 H 0.03 1.23 8.04 -2.39 -0.02 1.21 16 35 H 0.24 13.56 8.31 -92.71 -0.77 12.79 16 36 H 0.06 2.44 7.91 -2.39 -0.02 2.42 16 37 H 0.09 4.27 5.89 -2.38 -0.01 4.26 16 38 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.09 2.35 5.93 -2.39 -0.01 2.33 16 40 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.07 1.78 8.07 -2.38 -0.02 1.76 16 43 H 0.08 1.84 8.13 -2.39 -0.02 1.82 16 44 H 0.08 1.55 8.13 -2.39 -0.02 1.54 16 45 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 46 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.06 2.64 7.01 -2.39 -0.02 2.63 16 50 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -71.97 399.08 5.53 -66.44 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.89 Total: 21.26 kcal Atomic # 6 Polarization: 26.91 SS G_CDS: 6.49 Total: 33.40 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -3.66 Total: -106.95 kcal Atomic # 8 Polarization: -60.77 SS G_CDS: -0.22 Total: -60.99 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -71.97 5.53 -66.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118004458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.072 kcal (2) G-P(sol) polarization free energy of solvation -71.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds