Wall clock time and date at job start Tue Mar 31 2020 16:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47095 * 2 1 4 4 N 1.46499 * 109.46800 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99985 * 269.93283 * 4 3 2 6 6 H 1.08004 * 119.99629 * 8.63945 * 5 4 3 7 7 C 1.38810 * 120.00361 * 188.64231 * 5 4 3 8 8 N 1.31617 * 119.99751 * 25.18604 * 7 5 4 9 9 Si 1.86803 * 119.99947 * 205.19145 * 7 5 4 10 10 H 1.48497 * 109.47064 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46819 * 119.99995 * 9 7 5 12 12 H 1.48502 * 109.47010 * 239.99354 * 9 7 5 13 13 C 1.46495 * 120.00158 * 89.94105 * 4 3 2 14 14 C 1.50698 * 109.47474 * 89.99504 * 13 4 3 15 15 O 1.21277 * 120.00391 * 0.02562 * 14 13 4 16 16 N 1.34776 * 120.00098 * 179.97438 * 14 13 4 17 17 C 1.46938 * 120.63028 * 353.97312 * 16 14 13 18 18 C 1.53187 * 108.77439 * 126.41406 * 17 16 14 19 19 C 1.53037 * 109.31770 * 54.63255 * 18 17 16 20 20 C 1.53043 * 109.53758 * 298.63869 * 19 18 17 21 21 C 1.46923 * 120.63380 * 173.99639 * 16 14 13 22 22 H 1.09003 * 109.59086 * 113.80044 * 21 16 14 23 23 C 1.50703 * 109.58390 * 353.51787 * 21 16 14 24 24 O 1.20827 * 119.99739 * 298.30169 * 23 21 16 25 25 O 1.34220 * 120.00066 * 118.30626 * 23 21 16 26 26 C 1.45204 * 117.00240 * 180.02562 * 25 23 21 27 27 C 1.52993 * 109.47347 * 179.97438 * 26 25 23 28 28 H 1.08997 * 109.47102 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46929 * 299.99855 * 1 2 3 30 30 H 1.09001 * 109.46893 * 59.99883 * 1 2 3 31 31 H 1.09001 * 109.46929 * 240.00145 * 2 1 3 32 32 H 1.08995 * 109.47166 * 120.00454 * 2 1 3 33 33 H 1.09001 * 109.47114 * 60.00259 * 3 2 1 34 34 H 1.09001 * 109.47345 * 299.99840 * 3 2 1 35 35 H 0.97001 * 119.99815 * 179.97438 * 8 7 5 36 36 H 1.09006 * 109.47212 * 329.99146 * 13 4 3 37 37 H 1.09010 * 109.47196 * 209.99682 * 13 4 3 38 38 H 1.09000 * 109.58026 * 6.62774 * 17 16 14 39 39 H 1.09000 * 109.70336 * 246.26902 * 17 16 14 40 40 H 1.09004 * 109.49462 * 294.68308 * 18 17 16 41 41 H 1.08996 * 109.52395 * 174.60867 * 18 17 16 42 42 H 1.09000 * 109.45725 * 58.65408 * 19 18 17 43 43 H 1.08999 * 109.46753 * 178.61345 * 19 18 17 44 44 H 1.09006 * 109.49486 * 181.30962 * 20 19 18 45 45 H 1.09000 * 109.49807 * 301.40704 * 20 19 18 46 46 H 1.09003 * 109.46316 * 299.99589 * 26 25 23 47 47 H 1.08999 * 109.47259 * 59.99216 * 26 25 23 48 48 H 1.08999 * 109.47373 * 59.99541 * 27 26 25 49 49 H 1.09002 * 109.47508 * 179.97438 * 27 26 25 50 50 H 1.09000 * 109.47132 * 299.99757 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.4436 1.1850 6 1 3.6597 1.3041 2.1154 7 6 5.5665 1.6242 1.1912 8 7 6.1505 2.2658 0.2014 9 14 6.5899 0.9563 2.6041 10 1 5.7009 0.2806 3.5830 11 1 7.5810 -0.0175 2.0803 12 1 7.3012 2.0756 3.2723 13 6 4.2370 1.4413 -1.2696 14 6 4.4880 2.8616 -1.7061 15 8 4.0947 3.7842 -1.0242 16 7 5.1506 3.1068 -2.8539 17 6 5.7486 2.0067 -3.6228 18 6 5.2396 2.0800 -5.0657 19 6 5.5261 3.4720 -5.6335 20 6 4.7852 4.5247 -4.8058 21 6 5.2891 4.4792 -3.3599 22 1 6.3374 4.7762 -3.3287 23 6 4.4729 5.4166 -2.5076 24 8 3.2745 5.2799 -2.4368 25 8 5.0772 6.4032 -1.8273 26 6 4.2288 7.2676 -1.0265 27 6 5.0893 8.3232 -0.3295 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9564 -0.8900 35 1 7.1122 2.3923 0.2059 36 1 3.6477 0.9266 -2.0286 37 1 5.1896 0.9275 -1.1392 38 1 5.4594 1.0530 -3.1812 39 1 6.8346 2.0995 -3.6132 40 1 4.1657 1.8942 -5.0826 41 1 5.7482 1.3289 -5.6700 42 1 6.5978 3.6670 -5.5935 43 1 5.1871 3.5191 -6.6683 44 1 4.9710 5.5138 -5.2248 45 1 3.7155 4.3160 -4.8252 46 1 3.5003 7.7597 -1.6709 47 1 3.7072 6.6719 -0.2773 48 1 5.6111 8.9190 -1.0784 49 1 4.4523 8.9724 0.2714 50 1 5.8175 7.8308 0.3149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122998198.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:43 Heat of formation + Delta-G solvation = -94.235673 kcal Electronic energy + Delta-G solvation = -30953.859536 eV Core-core repulsion = 26982.348531 eV Total energy + Delta-G solvation = -3971.511005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.33096 -38.54508 -36.89849 -35.76939 -35.36730 -32.93286 -32.23934 -31.67766 -30.88029 -30.47416 -27.29163 -25.52347 -25.26956 -23.82119 -22.64543 -22.12707 -20.74230 -20.58443 -19.91126 -18.35820 -17.23001 -16.62341 -16.23536 -15.83726 -15.22692 -15.17472 -14.90214 -14.32193 -14.28814 -14.01394 -13.72155 -13.44666 -13.37264 -13.18491 -12.99215 -12.70844 -12.59562 -12.36875 -12.16009 -12.10573 -11.51622 -11.40613 -11.37589 -11.27473 -11.05632 -11.01042 -10.88125 -10.73296 -10.70627 -10.63994 -10.47084 -10.30530 -10.09868 -9.87464 -9.77355 -9.73753 -9.49509 -8.67617 -8.18489 -7.79239 -6.88240 -5.79614 -3.03798 2.89324 3.33518 3.39547 3.48539 3.50857 3.92665 4.21154 4.54832 4.87950 4.96979 5.02518 5.23842 5.30613 5.30986 5.32813 5.42593 5.45577 5.48043 5.66212 5.66938 5.68138 5.75201 5.80771 5.87751 5.96136 5.98565 6.02855 6.06653 6.13482 6.19717 6.19835 6.26332 6.27879 6.31033 6.41803 6.46291 6.48906 6.62626 6.69036 6.94627 7.05892 7.16957 7.21374 7.32320 7.80808 8.25093 8.43470 8.65432 9.17676 9.63888 9.88077 10.30123 11.30669 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.008892 B = 0.005478 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.972053 B = 5110.530437 C = 5738.114315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.152 3.848 4 N -0.574 5.574 5 C -0.240 4.240 6 H 0.077 0.923 7 C -0.003 4.003 8 N -0.898 5.898 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.295 1.295 13 C 0.172 3.828 14 C 0.532 3.468 15 O -0.497 6.497 16 N -0.619 5.619 17 C 0.125 3.875 18 C -0.139 4.139 19 C -0.112 4.112 20 C -0.122 4.122 21 C 0.160 3.840 22 H 0.083 0.917 23 C 0.489 3.511 24 O -0.505 6.505 25 O -0.361 6.361 26 C 0.072 3.928 27 C -0.149 4.149 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.035 0.965 35 H 0.252 0.748 36 H 0.036 0.964 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.059 0.941 49 H 0.073 0.927 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.951 2.411 -11.401 11.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C 0.025 3.975 4 N -0.293 5.293 5 C -0.369 4.369 6 H 0.095 0.905 7 C -0.200 4.200 8 N -0.544 5.544 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.222 1.222 13 C 0.041 3.959 14 C 0.321 3.679 15 O -0.370 6.370 16 N -0.361 5.361 17 C 0.001 3.999 18 C -0.177 4.177 19 C -0.150 4.150 20 C -0.161 4.161 21 C 0.054 3.946 22 H 0.101 0.899 23 C 0.333 3.667 24 O -0.392 6.392 25 O -0.278 6.278 26 C -0.002 4.002 27 C -0.206 4.206 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.078 0.922 49 H 0.092 0.908 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.420 2.929 -10.877 11.354 hybrid contribution 0.765 -0.097 0.823 1.128 sum -0.655 2.832 -10.054 10.466 Atomic orbital electron populations 1.21721 0.97236 1.00387 1.01141 1.22102 0.93788 1.00615 1.01571 1.20775 0.84275 0.93045 0.99360 1.43974 0.99791 1.83644 1.01851 1.19281 0.89658 1.42165 0.85825 0.90520 1.24657 0.97285 1.00013 0.98011 1.69915 1.09435 1.41229 1.33820 0.86245 0.80292 0.78596 0.81886 1.20530 1.21723 1.22208 1.20687 0.97875 0.90701 0.86599 1.22354 0.74079 0.94501 0.76959 1.90495 1.51002 1.44833 1.50627 1.48489 1.58996 1.03442 1.25179 1.21484 0.97417 0.90629 0.90347 1.22000 1.02060 0.96957 0.96724 1.21451 1.00373 0.94598 0.98578 1.21861 1.01691 0.99688 0.92822 1.20369 0.98806 0.83852 0.91535 0.89902 1.22554 0.87519 0.79125 0.77512 1.90591 1.16720 1.70133 1.61798 1.86377 1.42354 1.41573 1.57546 1.22774 0.92599 0.90861 0.93946 1.21765 1.00723 0.97597 1.00504 0.93703 0.93223 0.93404 0.93069 0.92111 0.93643 0.94655 0.93791 0.94571 0.87912 0.89420 0.92116 0.91473 0.91018 0.91655 0.91639 0.91124 0.90499 0.92466 0.90929 0.92161 0.90849 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.82 16 2 C -0.14 -2.55 6.26 -26.73 -0.17 -2.72 16 3 C 0.15 3.35 5.67 -4.04 -0.02 3.33 16 4 N -0.57 -14.46 2.02 -174.61 -0.35 -14.81 16 5 C -0.24 -6.60 9.69 -15.06 -0.15 -6.75 16 6 H 0.08 2.11 7.95 -52.48 -0.42 1.69 16 7 C 0.00 -0.07 4.89 -17.43 -0.09 -0.16 16 8 N -0.90 -25.08 8.97 55.49 0.50 -24.58 16 9 Si 0.90 21.82 29.62 -169.99 -5.04 16.78 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 C 0.17 4.01 3.79 -5.20 -0.02 3.99 16 14 C 0.53 12.81 5.45 -10.99 -0.06 12.75 16 15 O -0.50 -14.00 11.91 -21.21 -0.25 -14.25 16 16 N -0.62 -12.09 2.97 -166.53 -0.49 -12.58 16 17 C 0.12 1.87 6.35 -3.71 -0.02 1.85 16 18 C -0.14 -1.61 6.08 -26.62 -0.16 -1.77 16 19 C -0.11 -1.23 5.88 -26.69 -0.16 -1.39 16 20 C -0.12 -1.69 5.32 -26.61 -0.14 -1.83 16 21 C 0.16 2.89 3.34 -68.75 -0.23 2.66 16 22 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 23 C 0.49 10.52 4.50 36.01 0.16 10.68 16 24 O -0.51 -12.19 14.37 -26.91 -0.39 -12.58 16 25 O -0.36 -7.48 10.22 -41.34 -0.42 -7.90 16 26 C 0.07 1.30 6.19 37.15 0.23 1.53 16 27 C -0.15 -2.07 10.29 37.15 0.38 -1.69 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 34 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.04 0.75 7.87 -51.93 -0.41 0.34 16 37 H 0.10 2.52 5.87 -51.92 -0.30 2.21 16 38 H 0.09 1.33 5.93 -51.93 -0.31 1.02 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 1.19 7.94 -51.93 -0.41 0.78 16 46 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 47 H 0.07 1.52 8.13 -51.93 -0.42 1.09 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 393.38 15.07 5.93 5.93 Total: -1.00 -34.21 393.38 -9.60 -43.80 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -9.01 Total: 1.53 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: -0.07 Total: 18.66 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.35 Total: -51.98 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -1.06 Total: -34.74 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.04 Total: 16.78 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.21 -9.60 -43.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122998198.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.431 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds