Wall clock time and date at job start Tue Mar 31 2020 16:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47095 * 2 1 4 4 N 1.46499 * 109.46800 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99985 * 269.93283 * 4 3 2 6 6 H 1.08004 * 119.99629 * 8.63945 * 5 4 3 7 7 C 1.38810 * 120.00361 * 188.64231 * 5 4 3 8 8 N 1.31617 * 119.99751 * 25.18604 * 7 5 4 9 9 Si 1.86803 * 119.99947 * 205.19145 * 7 5 4 10 10 H 1.48497 * 109.47064 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46819 * 119.99995 * 9 7 5 12 12 H 1.48502 * 109.47010 * 239.99354 * 9 7 5 13 13 C 1.46495 * 120.00158 * 89.94105 * 4 3 2 14 14 C 1.50698 * 109.47474 * 89.99504 * 13 4 3 15 15 O 1.21277 * 120.00391 * 0.02562 * 14 13 4 16 16 N 1.34776 * 120.00098 * 179.97438 * 14 13 4 17 17 C 1.46938 * 120.63028 * 353.97312 * 16 14 13 18 18 C 1.53187 * 108.77439 * 126.41406 * 17 16 14 19 19 C 1.53037 * 109.31770 * 54.63255 * 18 17 16 20 20 C 1.53043 * 109.53758 * 298.63869 * 19 18 17 21 21 C 1.46923 * 120.63380 * 173.99639 * 16 14 13 22 22 H 1.09003 * 109.59086 * 113.80044 * 21 16 14 23 23 C 1.50703 * 109.58390 * 353.51787 * 21 16 14 24 24 O 1.20827 * 119.99739 * 298.30169 * 23 21 16 25 25 O 1.34220 * 120.00066 * 118.30626 * 23 21 16 26 26 C 1.45204 * 117.00240 * 180.02562 * 25 23 21 27 27 C 1.52993 * 109.47347 * 179.97438 * 26 25 23 28 28 H 1.08997 * 109.47102 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46929 * 299.99855 * 1 2 3 30 30 H 1.09001 * 109.46893 * 59.99883 * 1 2 3 31 31 H 1.09001 * 109.46929 * 240.00145 * 2 1 3 32 32 H 1.08995 * 109.47166 * 120.00454 * 2 1 3 33 33 H 1.09001 * 109.47114 * 60.00259 * 3 2 1 34 34 H 1.09001 * 109.47345 * 299.99840 * 3 2 1 35 35 H 0.97001 * 119.99815 * 179.97438 * 8 7 5 36 36 H 1.09006 * 109.47212 * 329.99146 * 13 4 3 37 37 H 1.09010 * 109.47196 * 209.99682 * 13 4 3 38 38 H 1.09000 * 109.58026 * 6.62774 * 17 16 14 39 39 H 1.09000 * 109.70336 * 246.26902 * 17 16 14 40 40 H 1.09004 * 109.49462 * 294.68308 * 18 17 16 41 41 H 1.08996 * 109.52395 * 174.60867 * 18 17 16 42 42 H 1.09000 * 109.45725 * 58.65408 * 19 18 17 43 43 H 1.08999 * 109.46753 * 178.61345 * 19 18 17 44 44 H 1.09006 * 109.49486 * 181.30962 * 20 19 18 45 45 H 1.09000 * 109.49807 * 301.40704 * 20 19 18 46 46 H 1.09003 * 109.46316 * 299.99589 * 26 25 23 47 47 H 1.08999 * 109.47259 * 59.99216 * 26 25 23 48 48 H 1.08999 * 109.47373 * 59.99541 * 27 26 25 49 49 H 1.09002 * 109.47508 * 179.97438 * 27 26 25 50 50 H 1.09000 * 109.47132 * 299.99757 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.4436 1.1850 6 1 3.6597 1.3041 2.1154 7 6 5.5665 1.6242 1.1912 8 7 6.1505 2.2658 0.2014 9 14 6.5899 0.9563 2.6041 10 1 5.7009 0.2806 3.5830 11 1 7.5810 -0.0175 2.0803 12 1 7.3012 2.0756 3.2723 13 6 4.2370 1.4413 -1.2696 14 6 4.4880 2.8616 -1.7061 15 8 4.0947 3.7842 -1.0242 16 7 5.1506 3.1068 -2.8539 17 6 5.7486 2.0067 -3.6228 18 6 5.2396 2.0800 -5.0657 19 6 5.5261 3.4720 -5.6335 20 6 4.7852 4.5247 -4.8058 21 6 5.2891 4.4792 -3.3599 22 1 6.3374 4.7762 -3.3287 23 6 4.4729 5.4166 -2.5076 24 8 3.2745 5.2799 -2.4368 25 8 5.0772 6.4032 -1.8273 26 6 4.2288 7.2676 -1.0265 27 6 5.0893 8.3232 -0.3295 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9564 -0.8900 35 1 7.1122 2.3923 0.2059 36 1 3.6477 0.9266 -2.0286 37 1 5.1896 0.9275 -1.1392 38 1 5.4594 1.0530 -3.1812 39 1 6.8346 2.0995 -3.6132 40 1 4.1657 1.8942 -5.0826 41 1 5.7482 1.3289 -5.6700 42 1 6.5978 3.6670 -5.5935 43 1 5.1871 3.5191 -6.6683 44 1 4.9710 5.5138 -5.2248 45 1 3.7155 4.3160 -4.8252 46 1 3.5003 7.7597 -1.6709 47 1 3.7072 6.6719 -0.2773 48 1 5.6111 8.9190 -1.0784 49 1 4.4523 8.9724 0.2714 50 1 5.8175 7.8308 0.3149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122998198.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:42 Heat of formation + Delta-G solvation = -113.218513 kcal Electronic energy + Delta-G solvation = -30954.682694 eV Core-core repulsion = 26982.348531 eV Total energy + Delta-G solvation = -3972.334163 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92406 -40.16732 -38.47983 -37.40398 -37.13969 -34.67315 -33.64150 -33.04219 -32.42098 -32.05394 -29.00876 -27.33083 -26.70103 -25.07651 -24.16949 -23.65309 -22.29499 -21.91653 -21.50927 -19.92186 -18.85463 -18.54567 -17.87371 -17.42110 -17.08430 -16.69338 -16.46990 -15.93855 -15.83153 -15.41050 -15.14039 -14.88121 -14.81983 -14.72924 -14.43070 -14.21299 -13.91275 -13.77742 -13.69190 -13.44658 -13.31354 -13.11133 -12.81092 -12.65883 -12.57633 -12.55748 -12.38783 -12.20410 -12.09192 -12.07625 -11.96148 -11.77022 -11.67237 -11.52819 -11.44606 -11.40680 -11.09782 -10.64759 -10.13632 -9.33959 -8.85527 -7.87404 -5.13630 1.30175 1.44526 1.47688 1.57494 1.85443 2.36862 2.41203 2.58931 3.26961 3.58659 3.66609 3.82331 3.92588 3.96156 4.07915 4.14106 4.19319 4.19353 4.27117 4.31074 4.33821 4.41466 4.58899 4.59932 4.72381 4.74274 4.77231 4.80081 4.87566 4.89192 4.90425 4.96377 5.07509 5.12173 5.15252 5.19459 5.21212 5.22886 5.24352 5.39526 5.50220 5.58923 5.62432 5.65589 5.84068 6.25195 6.73749 7.00772 7.13035 7.76390 7.96140 8.26980 9.19729 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.008892 B = 0.005478 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.972053 B = 5110.530437 C = 5738.114315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.153 3.847 4 N -0.590 5.590 5 C -0.255 4.255 6 H 0.067 0.933 7 C -0.046 4.046 8 N -0.912 5.912 9 Si 0.962 3.038 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.306 1.306 13 C 0.176 3.824 14 C 0.527 3.473 15 O -0.550 6.550 16 N -0.620 5.620 17 C 0.115 3.885 18 C -0.130 4.130 19 C -0.106 4.106 20 C -0.114 4.114 21 C 0.155 3.845 22 H 0.094 0.906 23 C 0.481 3.519 24 O -0.539 6.539 25 O -0.372 6.372 26 C 0.067 3.933 27 C -0.138 4.138 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.246 0.754 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.031 0.969 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.191 1.751 -13.519 13.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C 0.027 3.973 4 N -0.310 5.310 5 C -0.385 4.385 6 H 0.085 0.915 7 C -0.241 4.241 8 N -0.558 5.558 9 Si 0.791 3.209 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.234 1.234 13 C 0.046 3.954 14 C 0.316 3.684 15 O -0.427 6.427 16 N -0.360 5.360 17 C -0.007 4.007 18 C -0.168 4.168 19 C -0.143 4.143 20 C -0.152 4.152 21 C 0.050 3.950 22 H 0.112 0.888 23 C 0.326 3.674 24 O -0.429 6.429 25 O -0.289 6.289 26 C -0.007 4.007 27 C -0.194 4.194 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.125 0.875 42 H 0.099 0.901 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.049 0.951 48 H 0.102 0.898 49 H 0.120 0.880 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.646 2.241 -13.051 13.257 hybrid contribution 0.505 0.181 1.474 1.569 sum -0.141 2.421 -11.577 11.828 Atomic orbital electron populations 1.21666 0.94415 1.02184 1.01514 1.21902 0.96119 0.97234 1.01360 1.20860 0.83092 0.95440 0.97869 1.44191 1.00895 1.84010 1.01896 1.19421 0.90248 1.42341 0.86508 0.91520 1.25305 0.98016 1.00301 1.00491 1.70083 1.08907 1.41733 1.35121 0.85299 0.78719 0.77467 0.79397 1.19963 1.20850 1.23420 1.20637 0.97433 0.90777 0.86531 1.22324 0.74209 0.94085 0.77762 1.90473 1.53331 1.46103 1.52816 1.48412 1.57846 1.05323 1.24405 1.21815 0.97955 0.88829 0.92072 1.21966 1.01776 0.98672 0.94421 1.21487 1.00937 0.92647 0.99269 1.21881 1.00700 1.02306 0.90303 1.20743 0.98985 0.82108 0.93202 0.88785 1.23369 0.87549 0.79224 0.77224 1.90549 1.18361 1.70900 1.63093 1.86386 1.43064 1.41893 1.57558 1.22979 0.93631 0.90808 0.93249 1.21767 1.00328 0.96603 1.00746 0.91127 0.93203 0.92765 0.92379 0.93118 0.95621 0.95645 0.94478 0.92215 0.89248 0.89985 0.90980 0.92336 0.87496 0.90079 0.88633 0.88897 0.92508 0.91007 0.95068 0.89847 0.88006 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.91 71.98 0.71 -3.25 16 2 C -0.13 -4.55 6.26 30.60 0.19 -4.36 16 3 C 0.15 6.99 5.67 86.38 0.49 7.48 16 4 N -0.59 -30.75 2.02 -706.33 -1.43 -32.18 16 5 C -0.26 -14.50 9.69 84.03 0.81 -13.69 16 6 H 0.07 3.81 7.95 -2.91 -0.02 3.79 16 7 C -0.05 -2.57 4.89 84.86 0.41 -2.16 16 8 N -0.91 -52.23 8.97 21.65 0.19 -52.03 16 9 Si 0.96 45.82 29.62 68.60 2.03 47.85 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.31 -15.08 7.11 99.48 0.71 -14.37 16 13 C 0.18 8.43 3.79 85.63 0.32 8.75 16 14 C 0.53 26.14 5.45 87.66 0.48 26.62 16 15 O -0.55 -32.55 11.91 22.58 0.27 -32.28 16 16 N -0.62 -24.25 2.97 -799.17 -2.38 -26.63 16 17 C 0.11 3.28 6.35 86.36 0.55 3.83 16 18 C -0.13 -2.60 6.08 30.67 0.19 -2.41 16 19 C -0.11 -1.91 5.88 30.62 0.18 -1.73 16 20 C -0.11 -2.93 5.32 30.67 0.16 -2.77 16 21 C 0.15 5.54 3.34 44.23 0.15 5.69 16 22 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 23 C 0.48 21.33 4.50 71.24 0.32 21.65 16 24 O -0.54 -27.28 14.37 29.76 0.43 -26.85 16 25 O -0.37 -15.89 10.22 -49.30 -0.50 -16.40 16 26 C 0.07 2.51 6.19 71.98 0.45 2.96 16 27 C -0.14 -3.76 10.29 71.98 0.74 -3.02 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.03 1.23 8.04 -2.39 -0.02 1.21 16 34 H 0.03 1.18 8.07 -2.39 -0.02 1.16 16 35 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 36 H 0.06 2.49 7.87 -2.38 -0.02 2.47 16 37 H 0.09 4.48 5.87 -2.38 -0.01 4.47 16 38 H 0.08 2.42 5.93 -2.39 -0.01 2.40 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.06 1.71 7.94 -2.39 -0.02 1.69 16 46 H 0.07 2.42 8.13 -2.39 -0.02 2.40 16 47 H 0.03 1.40 8.13 -2.39 -0.02 1.38 16 48 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 50 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -79.10 393.38 5.67 -73.43 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.89 Total: 21.50 kcal Atomic # 6 Polarization: 37.43 SS G_CDS: 6.16 Total: 43.59 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -3.61 Total: -110.84 kcal Atomic # 8 Polarization: -75.73 SS G_CDS: 0.19 Total: -75.53 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -79.10 5.67 -73.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122998198.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.790 kcal (2) G-P(sol) polarization free energy of solvation -79.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds