Wall clock time and date at job start Tue Mar 31 2020 16:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47369 * 2 1 4 4 N 1.46501 * 109.47590 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99770 * 275.33808 * 4 3 2 6 6 H 1.08001 * 119.99999 * 337.62642 * 5 4 3 7 7 C 1.38817 * 120.00280 * 157.62852 * 5 4 3 8 8 N 1.31617 * 119.99556 * 8.71899 * 7 5 4 9 9 Si 1.86796 * 120.00215 * 188.72051 * 7 5 4 10 10 H 1.48505 * 109.47478 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47166 * 119.99855 * 9 7 5 12 12 H 1.48501 * 109.47288 * 239.99887 * 9 7 5 13 13 C 1.46498 * 120.00320 * 95.33215 * 4 3 2 14 14 C 1.50697 * 109.46918 * 270.00355 * 13 4 3 15 15 O 1.21286 * 120.00549 * 0.02562 * 14 13 4 16 16 N 1.34787 * 119.99981 * 179.97438 * 14 13 4 17 17 C 1.46494 * 120.00150 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47166 * 60.00163 * 17 16 14 19 19 O 1.20824 * 120.00085 * 144.99974 * 18 17 16 20 20 O 1.34226 * 120.00146 * 324.99926 * 18 17 16 21 21 C 1.45201 * 117.00457 * 179.97438 * 20 18 17 22 22 C 1.52999 * 109.47427 * 300.00448 * 17 16 14 23 23 C 1.53002 * 109.46588 * 299.99892 * 22 17 16 24 24 C 1.52997 * 109.47409 * 299.99739 * 23 22 17 25 25 C 1.53004 * 109.47052 * 60.00189 * 24 23 22 26 26 C 1.52997 * 109.47018 * 179.97438 * 17 16 14 27 27 H 1.08999 * 109.47056 * 59.99722 * 1 2 3 28 28 H 1.08999 * 109.47291 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47029 * 300.00019 * 1 2 3 30 30 H 1.08999 * 109.47029 * 239.99981 * 2 1 3 31 31 H 1.08999 * 109.47056 * 120.00278 * 2 1 3 32 32 H 1.08999 * 109.47060 * 60.00000 * 3 2 1 33 33 H 1.08999 * 109.47258 * 300.00154 * 3 2 1 34 34 H 0.97001 * 119.99811 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47248 * 150.00756 * 13 4 3 36 36 H 1.08995 * 109.47128 * 30.00529 * 13 4 3 37 37 H 0.96995 * 119.99352 * 0.02562 * 16 14 13 38 38 H 1.08997 * 109.47027 * 300.00064 * 21 20 18 39 39 H 1.08992 * 109.46674 * 59.99871 * 21 20 18 40 40 H 1.09005 * 109.47005 * 180.02562 * 21 20 18 41 41 H 1.08997 * 109.47295 * 180.02562 * 22 17 16 42 42 H 1.08995 * 109.47491 * 59.99451 * 22 17 16 43 43 H 1.09008 * 109.47126 * 179.97438 * 23 22 17 44 44 H 1.09003 * 109.47328 * 60.00457 * 23 22 17 45 45 H 1.08996 * 109.47309 * 179.97438 * 24 23 22 46 46 H 1.08997 * 109.47447 * 300.00177 * 24 23 22 47 47 H 1.08997 * 109.47004 * 59.99717 * 25 24 23 48 48 H 1.08993 * 109.47274 * 179.97438 * 25 24 23 49 49 H 1.08995 * 109.47471 * 300.00309 * 26 17 16 50 50 H 1.09006 * 109.47265 * 179.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.3320 1.1798 6 1 3.7115 1.6025 2.1094 7 6 5.5000 0.8722 1.1818 8 7 6.1407 0.7060 0.0442 9 14 6.3531 0.4895 2.7989 10 1 5.4228 0.7573 3.9250 11 1 6.7563 -0.9396 2.8198 12 1 7.5584 1.3459 2.9376 13 6 4.2371 1.5605 -1.2641 14 6 4.4880 0.1864 -1.8296 15 8 4.0937 -0.7950 -1.2359 16 7 5.1497 0.0480 -2.9956 17 6 5.3931 -1.2878 -3.5457 18 6 4.0760 -1.9780 -3.7904 19 8 3.9487 -2.7187 -4.7364 20 8 3.0442 -1.7698 -2.9575 21 6 1.8058 -2.4671 -3.2548 22 6 6.2204 -2.1056 -2.5519 23 6 7.5576 -1.4049 -2.3035 24 6 8.3218 -1.2815 -3.6232 25 6 7.4944 -0.4637 -4.6170 26 6 6.1566 -1.1643 -4.8658 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9562 -0.8899 34 1 7.0559 0.3844 0.0455 35 1 5.1896 2.0599 -1.0868 36 1 3.6478 2.1429 -1.9723 37 1 5.4646 0.8329 -3.4706 38 1 1.4499 -2.1709 -4.2415 39 1 1.9819 -3.5426 -3.2398 40 1 1.0558 -2.2108 -2.5064 41 1 6.4019 -3.0993 -2.9613 42 1 5.6761 -2.1935 -1.6117 43 1 8.1470 -1.9872 -1.5951 44 1 7.3765 -0.4110 -1.8941 45 1 9.2742 -0.7819 -3.4463 46 1 8.5029 -2.2753 -4.0325 47 1 7.3132 0.5301 -4.2078 48 1 8.0389 -0.3754 -5.5571 49 1 5.5668 -0.5819 -5.5735 50 1 6.3381 -2.1583 -5.2748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123042863.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:00 Heat of formation + Delta-G solvation = -101.895467 kcal Electronic energy + Delta-G solvation = -31944.417849 eV Core-core repulsion = 27972.574690 eV Total energy + Delta-G solvation = -3971.843159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.63518 -38.61700 -37.28020 -35.87207 -35.29257 -32.82880 -32.76220 -30.65605 -30.36490 -29.74947 -27.32518 -26.62516 -25.43455 -23.45940 -22.45857 -22.12540 -20.54789 -20.22887 -19.57460 -18.41773 -17.30816 -16.84620 -16.45675 -15.84668 -15.69941 -15.07632 -14.81167 -14.32078 -14.12862 -13.78008 -13.61937 -13.45992 -13.08244 -12.99472 -12.77826 -12.56513 -12.41997 -12.05695 -11.96616 -11.93881 -11.81859 -11.58808 -11.35681 -11.08829 -10.94774 -10.86120 -10.72581 -10.53948 -10.48312 -10.27296 -10.23276 -10.15774 -9.98942 -9.91227 -9.78078 -9.63849 -9.46080 -8.63911 -8.08556 -7.94455 -6.71211 -5.75842 -3.12968 2.60256 3.23660 3.40625 3.49478 3.50277 4.14212 4.39713 4.60579 4.83344 5.01392 5.04721 5.36122 5.42038 5.44246 5.44673 5.50149 5.59314 5.63835 5.70397 5.78770 5.83192 5.86386 5.88302 5.91480 5.96690 6.13690 6.21488 6.26553 6.32688 6.35402 6.40887 6.50543 6.57809 6.59648 6.66897 6.73554 6.84928 6.92025 6.96079 7.02985 7.22051 7.37148 7.43211 7.57832 7.81736 8.25370 8.41042 8.73037 9.26601 9.82904 9.98606 10.35255 11.30496 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.007066 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.065498 B = 3961.474375 C = 5817.253629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.153 3.847 4 N -0.576 5.576 5 C -0.235 4.235 6 H 0.071 0.929 7 C 0.011 3.989 8 N -0.905 5.905 9 Si 0.903 3.097 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.295 1.295 13 C 0.167 3.833 14 C 0.530 3.470 15 O -0.501 6.501 16 N -0.738 5.738 17 C 0.201 3.799 18 C 0.462 3.538 19 O -0.533 6.533 20 O -0.302 6.302 21 C 0.030 3.970 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.114 4.114 26 C -0.108 4.108 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.251 0.749 35 H 0.118 0.882 36 H 0.021 0.979 37 H 0.389 0.611 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.096 0.904 41 H 0.051 0.949 42 H 0.099 0.901 43 H 0.054 0.946 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 -0.733 -9.486 9.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.027 3.973 4 N -0.295 5.295 5 C -0.364 4.364 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.734 3.266 10 H -0.208 1.208 11 H -0.219 1.219 12 H -0.222 1.222 13 C 0.037 3.963 14 C 0.317 3.683 15 O -0.372 6.372 16 N -0.397 5.397 17 C 0.111 3.889 18 C 0.304 3.696 19 O -0.423 6.423 20 O -0.215 6.215 21 C -0.064 4.064 22 C -0.156 4.156 23 C -0.152 4.152 24 C -0.157 4.157 25 C -0.152 4.152 26 C -0.146 4.146 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.136 0.864 36 H 0.038 0.962 37 H 0.223 0.777 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.070 0.930 42 H 0.117 0.883 43 H 0.072 0.928 44 H 0.118 0.882 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.382 -1.689 -9.216 9.471 hybrid contribution 0.572 -0.493 0.503 0.907 sum -0.809 -2.182 -8.714 9.019 Atomic orbital electron populations 1.21791 0.98588 0.99957 1.00265 1.22191 0.92037 1.00494 1.03539 1.20873 0.84504 0.94024 0.97906 1.43733 0.99525 1.83856 1.02436 1.19223 0.95300 1.35946 0.85957 0.91142 1.24823 0.97738 0.99369 0.96595 1.69694 1.11190 1.51043 1.23344 0.86206 0.78941 0.77799 0.83621 1.20783 1.21891 1.22206 1.20708 0.98491 0.91284 0.85831 1.22025 0.74671 0.94381 0.77206 1.90484 1.49992 1.40373 1.56387 1.46457 1.62677 1.04705 1.25814 1.19827 0.87466 0.86379 0.95225 1.24594 0.86883 0.79109 0.78979 1.90581 1.83840 1.37205 1.30707 1.87075 1.20034 1.63770 1.50621 1.23173 0.85137 0.96811 1.01323 1.21813 0.96640 0.96573 1.00619 1.21505 0.94121 1.03659 0.95943 1.21573 0.98354 0.99470 0.96279 1.21514 0.94837 0.99667 0.99133 1.21664 0.96145 1.02536 0.94299 0.93956 0.94189 0.93836 0.90579 0.92512 0.94472 0.94877 0.93704 0.86450 0.96158 0.77697 0.93025 0.92829 0.88602 0.92997 0.88256 0.92771 0.88249 0.92250 0.92797 0.91192 0.91940 0.91442 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.14 -2.83 5.70 -26.74 -0.15 -2.98 16 3 C 0.15 3.13 5.72 -4.05 -0.02 3.11 16 4 N -0.58 -13.47 2.07 -174.62 -0.36 -13.83 16 5 C -0.24 -6.08 9.69 -15.06 -0.15 -6.22 16 6 H 0.07 1.84 7.84 -52.49 -0.41 1.43 16 7 C 0.01 0.29 5.41 -17.43 -0.09 0.19 16 8 N -0.90 -22.54 7.74 55.49 0.43 -22.11 16 9 Si 0.90 21.45 29.56 -169.99 -5.03 16.42 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.17 3.60 5.47 -5.20 -0.03 3.57 16 14 C 0.53 11.06 4.74 -10.98 -0.05 11.01 16 15 O -0.50 -11.90 9.19 -18.96 -0.17 -12.08 16 16 N -0.74 -12.73 4.03 -48.68 -0.20 -12.93 16 17 C 0.20 3.38 0.63 -132.98 -0.08 3.29 16 18 C 0.46 8.66 6.71 36.01 0.24 8.90 16 19 O -0.53 -10.42 15.84 -18.75 -0.30 -10.72 16 20 O -0.30 -5.83 6.55 -47.36 -0.31 -6.14 16 21 C 0.03 0.47 10.56 101.05 1.07 1.54 16 22 C -0.12 -2.12 4.50 -26.73 -0.12 -2.24 16 23 C -0.11 -1.88 5.76 -26.73 -0.15 -2.04 16 24 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 25 C -0.11 -1.37 5.75 -26.70 -0.15 -1.52 16 26 C -0.11 -1.49 4.31 -26.71 -0.12 -1.60 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.65 6.20 -51.93 -0.32 1.32 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.04 0.75 8.08 -51.93 -0.42 0.33 16 33 H 0.03 0.62 7.83 -51.93 -0.41 0.21 16 34 H 0.25 6.27 7.45 -40.82 -0.30 5.96 16 35 H 0.12 2.72 6.22 -51.93 -0.32 2.40 16 36 H 0.02 0.40 7.86 -51.93 -0.41 -0.01 16 37 H 0.39 5.81 7.32 -40.82 -0.30 5.51 16 38 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 39 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 40 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 2.20 6.17 -51.93 -0.32 1.88 16 43 H 0.05 0.90 8.14 -51.92 -0.42 0.47 16 44 H 0.10 1.86 6.19 -51.93 -0.32 1.54 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.85 6.86 -51.93 -0.36 0.49 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.08 1.13 7.87 -51.93 -0.41 0.72 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -28.71 378.82 -8.42 -37.13 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -8.59 Total: 7.20 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 0.39 Total: 11.35 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.13 Total: -48.86 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.78 Total: -28.94 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.71 -8.42 -37.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123042863.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.768 kcal (2) G-P(sol) polarization free energy of solvation -28.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds