Wall clock time and date at job start Tue Mar 31 2020 16:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47369 * 2 1 4 4 N 1.46501 * 109.47590 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99770 * 275.33808 * 4 3 2 6 6 H 1.08001 * 119.99999 * 337.62642 * 5 4 3 7 7 C 1.38817 * 120.00280 * 157.62852 * 5 4 3 8 8 N 1.31617 * 119.99556 * 8.71899 * 7 5 4 9 9 Si 1.86796 * 120.00215 * 188.72051 * 7 5 4 10 10 H 1.48505 * 109.47478 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47166 * 119.99855 * 9 7 5 12 12 H 1.48501 * 109.47288 * 239.99887 * 9 7 5 13 13 C 1.46498 * 120.00320 * 95.33215 * 4 3 2 14 14 C 1.50697 * 109.46918 * 270.00355 * 13 4 3 15 15 O 1.21286 * 120.00549 * 0.02562 * 14 13 4 16 16 N 1.34787 * 119.99981 * 179.97438 * 14 13 4 17 17 C 1.46494 * 120.00150 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47166 * 60.00163 * 17 16 14 19 19 O 1.20824 * 120.00085 * 144.99974 * 18 17 16 20 20 O 1.34226 * 120.00146 * 324.99926 * 18 17 16 21 21 C 1.45201 * 117.00457 * 179.97438 * 20 18 17 22 22 C 1.52999 * 109.47427 * 300.00448 * 17 16 14 23 23 C 1.53002 * 109.46588 * 299.99892 * 22 17 16 24 24 C 1.52997 * 109.47409 * 299.99739 * 23 22 17 25 25 C 1.53004 * 109.47052 * 60.00189 * 24 23 22 26 26 C 1.52997 * 109.47018 * 179.97438 * 17 16 14 27 27 H 1.08999 * 109.47056 * 59.99722 * 1 2 3 28 28 H 1.08999 * 109.47291 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47029 * 300.00019 * 1 2 3 30 30 H 1.08999 * 109.47029 * 239.99981 * 2 1 3 31 31 H 1.08999 * 109.47056 * 120.00278 * 2 1 3 32 32 H 1.08999 * 109.47060 * 60.00000 * 3 2 1 33 33 H 1.08999 * 109.47258 * 300.00154 * 3 2 1 34 34 H 0.97001 * 119.99811 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47248 * 150.00756 * 13 4 3 36 36 H 1.08995 * 109.47128 * 30.00529 * 13 4 3 37 37 H 0.96995 * 119.99352 * 0.02562 * 16 14 13 38 38 H 1.08997 * 109.47027 * 300.00064 * 21 20 18 39 39 H 1.08992 * 109.46674 * 59.99871 * 21 20 18 40 40 H 1.09005 * 109.47005 * 180.02562 * 21 20 18 41 41 H 1.08997 * 109.47295 * 180.02562 * 22 17 16 42 42 H 1.08995 * 109.47491 * 59.99451 * 22 17 16 43 43 H 1.09008 * 109.47126 * 179.97438 * 23 22 17 44 44 H 1.09003 * 109.47328 * 60.00457 * 23 22 17 45 45 H 1.08996 * 109.47309 * 179.97438 * 24 23 22 46 46 H 1.08997 * 109.47447 * 300.00177 * 24 23 22 47 47 H 1.08997 * 109.47004 * 59.99717 * 25 24 23 48 48 H 1.08993 * 109.47274 * 179.97438 * 25 24 23 49 49 H 1.08995 * 109.47471 * 300.00309 * 26 17 16 50 50 H 1.09006 * 109.47265 * 179.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.3320 1.1798 6 1 3.7115 1.6025 2.1094 7 6 5.5000 0.8722 1.1818 8 7 6.1407 0.7060 0.0442 9 14 6.3531 0.4895 2.7989 10 1 5.4228 0.7573 3.9250 11 1 6.7563 -0.9396 2.8198 12 1 7.5584 1.3459 2.9376 13 6 4.2371 1.5605 -1.2641 14 6 4.4880 0.1864 -1.8296 15 8 4.0937 -0.7950 -1.2359 16 7 5.1497 0.0480 -2.9956 17 6 5.3931 -1.2878 -3.5457 18 6 4.0760 -1.9780 -3.7904 19 8 3.9487 -2.7187 -4.7364 20 8 3.0442 -1.7698 -2.9575 21 6 1.8058 -2.4671 -3.2548 22 6 6.2204 -2.1056 -2.5519 23 6 7.5576 -1.4049 -2.3035 24 6 8.3218 -1.2815 -3.6232 25 6 7.4944 -0.4637 -4.6170 26 6 6.1566 -1.1643 -4.8658 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9562 -0.8899 34 1 7.0559 0.3844 0.0455 35 1 5.1896 2.0599 -1.0868 36 1 3.6478 2.1429 -1.9723 37 1 5.4646 0.8329 -3.4706 38 1 1.4499 -2.1709 -4.2415 39 1 1.9819 -3.5426 -3.2398 40 1 1.0558 -2.2108 -2.5064 41 1 6.4019 -3.0993 -2.9613 42 1 5.6761 -2.1935 -1.6117 43 1 8.1470 -1.9872 -1.5951 44 1 7.3765 -0.4110 -1.8941 45 1 9.2742 -0.7819 -3.4463 46 1 8.5029 -2.2753 -4.0325 47 1 7.3132 0.5301 -4.2078 48 1 8.0389 -0.3754 -5.5571 49 1 5.5668 -0.5819 -5.5735 50 1 6.3381 -2.1583 -5.2748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123042863.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:59 Heat of formation + Delta-G solvation = -116.011126 kcal Electronic energy + Delta-G solvation = -31945.029950 eV Core-core repulsion = 27972.574690 eV Total energy + Delta-G solvation = -3972.455260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.04744 -40.08730 -38.78119 -37.37820 -36.88465 -34.49500 -34.23054 -32.30943 -31.69886 -31.16370 -28.59245 -28.27293 -27.14429 -24.76345 -23.88294 -23.59483 -21.97840 -21.66473 -21.15427 -19.80764 -18.84903 -18.52738 -17.93203 -17.27231 -17.21093 -16.87352 -16.21690 -15.84055 -15.54820 -15.43374 -14.95414 -14.84904 -14.68844 -14.33618 -14.22583 -14.10694 -13.68276 -13.60346 -13.30066 -13.24328 -13.12583 -13.00730 -12.88039 -12.81189 -12.65595 -12.47304 -12.12023 -12.08084 -11.94953 -11.85562 -11.71039 -11.65322 -11.62843 -11.34780 -11.16522 -11.08492 -10.97233 -10.53988 -9.78246 -9.49088 -8.53389 -7.70894 -5.07148 1.14633 1.46140 1.52691 1.56471 1.91578 2.55636 2.69032 2.90573 3.48517 3.60256 3.79933 3.85549 3.85994 4.19532 4.23851 4.26171 4.28213 4.39028 4.41009 4.50545 4.54554 4.56094 4.63834 4.69016 4.77679 4.83143 4.83740 4.89875 5.02804 5.05566 5.14339 5.14804 5.26307 5.29046 5.32297 5.39348 5.40019 5.44101 5.53130 5.59018 5.62515 5.66737 5.81887 5.91682 6.01940 6.52824 6.82414 7.19368 7.39095 7.99909 8.35183 8.46363 9.31380 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.007066 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.065498 B = 3961.474375 C = 5817.253629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.151 3.849 4 N -0.590 5.590 5 C -0.249 4.249 6 H 0.059 0.941 7 C -0.024 4.024 8 N -0.899 5.899 9 Si 0.945 3.055 10 H -0.282 1.282 11 H -0.309 1.309 12 H -0.291 1.291 13 C 0.166 3.834 14 C 0.534 3.466 15 O -0.531 6.531 16 N -0.726 5.726 17 C 0.202 3.798 18 C 0.456 3.544 19 O -0.544 6.544 20 O -0.323 6.323 21 C 0.026 3.974 22 C -0.112 4.112 23 C -0.110 4.110 24 C -0.113 4.113 25 C -0.108 4.108 26 C -0.102 4.102 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.018 0.982 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.246 0.754 35 H 0.100 0.900 36 H 0.045 0.955 37 H 0.403 0.597 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.108 0.892 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.044 0.956 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.081 0.919 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.143 -0.132 -11.485 11.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.026 3.974 4 N -0.310 5.310 5 C -0.378 4.378 6 H 0.077 0.923 7 C -0.220 4.220 8 N -0.546 5.546 9 Si 0.777 3.223 10 H -0.208 1.208 11 H -0.237 1.237 12 H -0.218 1.218 13 C 0.036 3.964 14 C 0.321 3.679 15 O -0.405 6.405 16 N -0.384 5.384 17 C 0.112 3.888 18 C 0.300 3.700 19 O -0.435 6.435 20 O -0.237 6.237 21 C -0.068 4.068 22 C -0.150 4.150 23 C -0.148 4.148 24 C -0.151 4.151 25 C -0.145 4.145 26 C -0.140 4.140 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.037 0.963 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.118 0.882 36 H 0.063 0.937 37 H 0.239 0.761 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.126 0.874 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.112 0.888 49 H 0.099 0.901 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.401 -1.060 -11.246 11.383 hybrid contribution 0.523 -0.716 1.134 1.440 sum -0.878 -1.776 -10.112 10.304 Atomic orbital electron populations 1.21681 0.95093 1.01136 1.01640 1.21981 0.94992 0.99332 1.00710 1.20989 0.83073 0.94511 0.98858 1.43864 1.00719 1.84129 1.02281 1.19263 0.95642 1.36253 0.86692 0.92270 1.25262 0.98400 1.00010 0.98303 1.69800 1.10746 1.50674 1.23380 0.85550 0.78322 0.76362 0.82067 1.20771 1.23749 1.21777 1.20680 0.97987 0.91922 0.85828 1.21788 0.74691 0.93608 0.77800 1.90488 1.51248 1.41134 1.57629 1.46139 1.61659 1.05701 1.24881 1.19976 0.86918 0.85342 0.96548 1.24935 0.87357 0.79050 0.78672 1.90561 1.84113 1.37755 1.31106 1.87055 1.21218 1.64345 1.51078 1.23361 0.84184 0.96662 1.02550 1.21679 0.97090 0.97558 0.98718 1.21425 0.93658 1.01756 0.97950 1.21538 0.98519 1.00651 0.94359 1.21519 0.93832 0.98962 1.00231 1.21688 0.96761 1.03185 0.92336 0.92051 0.93167 0.92916 0.92396 0.96305 0.94457 0.92741 0.94276 0.88224 0.93668 0.76126 0.91627 0.92789 0.87376 0.92351 0.92964 0.93709 0.90566 0.90838 0.91692 0.91218 0.88795 0.90079 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.91 71.98 0.71 -3.35 16 2 C -0.13 -5.16 5.70 30.59 0.17 -4.99 16 3 C 0.15 6.10 5.72 86.38 0.49 6.60 16 4 N -0.59 -27.75 2.07 -706.38 -1.46 -29.20 16 5 C -0.25 -13.08 9.69 84.04 0.81 -12.27 16 6 H 0.06 3.17 7.84 -2.91 -0.02 3.15 16 7 C -0.02 -1.24 5.41 84.86 0.46 -0.78 16 8 N -0.90 -45.56 7.74 21.65 0.17 -45.39 16 9 Si 0.94 45.02 29.56 68.60 2.03 47.04 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 11 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 12 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 13 C 0.17 7.09 5.47 85.63 0.47 7.56 16 14 C 0.53 22.35 4.74 87.65 0.42 22.77 16 15 O -0.53 -25.84 9.19 20.39 0.19 -25.66 16 16 N -0.73 -24.48 4.03 -426.32 -1.72 -26.20 16 17 C 0.20 6.61 0.63 2.86 0.00 6.61 16 18 C 0.46 16.86 6.71 71.24 0.48 17.33 16 19 O -0.54 -20.68 15.84 21.97 0.35 -20.33 16 20 O -0.32 -12.48 6.55 -43.63 -0.29 -12.76 16 21 C 0.03 0.80 10.56 113.37 1.20 2.00 16 22 C -0.11 -4.04 4.50 30.59 0.14 -3.90 16 23 C -0.11 -3.59 5.76 30.59 0.18 -3.41 16 24 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 25 C -0.11 -2.23 5.75 30.61 0.18 -2.05 16 26 C -0.10 -2.52 4.31 30.61 0.13 -2.39 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 2.51 6.20 -2.39 -0.01 2.50 16 31 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16 33 H 0.05 1.94 7.83 -2.39 -0.02 1.92 16 34 H 0.25 12.51 7.45 -92.71 -0.69 11.82 16 35 H 0.10 4.63 6.22 -2.39 -0.01 4.62 16 36 H 0.05 1.69 7.86 -2.39 -0.02 1.67 16 37 H 0.40 11.37 7.32 -92.71 -0.68 10.69 16 38 H 0.07 1.78 8.13 -2.39 -0.02 1.76 16 39 H 0.05 1.60 8.13 -2.39 -0.02 1.58 16 40 H 0.11 2.95 8.14 -2.38 -0.02 2.93 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.05 2.40 6.17 -2.39 -0.01 2.39 16 43 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 44 H 0.08 2.86 6.19 -2.39 -0.01 2.84 16 45 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.07 1.47 6.86 -2.39 -0.02 1.45 16 48 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.08 2.06 7.87 -2.38 -0.02 2.04 16 Total: -1.00 -63.53 378.82 5.61 -57.92 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.32 Total: 27.35 kcal Atomic # 6 Polarization: 21.22 SS G_CDS: 6.02 Total: 27.24 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -3.01 Total: -100.80 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: 0.25 Total: -58.75 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -63.53 5.61 -57.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123042863.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.094 kcal (2) G-P(sol) polarization free energy of solvation -63.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds